Wall clock time and date at job start Tue Mar 31 2020 20:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46916 * 2 1 4 4 C 1.53002 * 109.46979 * 119.99657 * 2 1 3 5 5 C 1.52994 * 109.46976 * 65.92944 * 4 2 1 6 6 H 1.09001 * 109.47368 * 305.34069 * 5 4 2 7 7 C 1.53010 * 109.47012 * 185.34172 * 5 4 2 8 8 N 1.46505 * 109.47464 * 65.34394 * 5 4 2 9 9 N 1.40083 * 126.09619 * 59.99262 * 8 5 4 10 10 C 1.30844 * 108.41613 * 180.02562 * 9 8 5 11 11 C 1.39691 * 108.46618 * 0.02562 * 10 9 8 12 12 C 1.35847 * 126.09986 * 240.00164 * 8 5 4 13 13 N 1.39203 * 126.27085 * 359.97438 * 12 8 5 14 14 C 1.34776 * 120.00104 * 179.97438 * 13 12 8 15 15 O 1.21400 * 119.99949 * 359.97438 * 14 13 12 16 16 C 1.49303 * 120.00116 * 179.97438 * 14 13 12 17 17 O 1.21369 * 120.00012 * 0.02562 * 16 14 13 18 18 N 1.34776 * 120.00107 * 179.97438 * 16 14 13 19 19 C 1.46503 * 120.00405 * 180.02562 * 18 16 14 20 20 C 1.52995 * 109.47361 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.46921 * 180.02562 * 20 19 18 22 22 H 1.07994 * 120.00286 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99905 * 180.02562 * 21 20 19 24 24 N 1.31519 * 119.99992 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47018 * 59.99667 * 25 23 21 27 27 H 1.48497 * 109.47026 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47045 * 300.00120 * 25 23 21 29 29 H 1.09000 * 109.47157 * 54.77748 * 1 2 3 30 30 H 1.08997 * 109.46506 * 174.77300 * 1 2 3 31 31 H 1.08996 * 109.47102 * 294.77031 * 1 2 3 32 32 H 1.08999 * 109.47537 * 239.99810 * 2 1 3 33 33 H 1.08993 * 109.46948 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46601 * 300.00092 * 3 2 1 35 35 H 1.08999 * 109.46713 * 59.99856 * 3 2 1 36 36 H 1.08993 * 109.47132 * 305.92400 * 4 2 1 37 37 H 1.09001 * 109.46913 * 185.92707 * 4 2 1 38 38 H 1.09002 * 109.46881 * 295.05534 * 7 5 4 39 39 H 1.08997 * 109.46660 * 55.05650 * 7 5 4 40 40 H 1.08995 * 109.46926 * 175.05722 * 7 5 4 41 41 H 1.07999 * 125.76675 * 180.26424 * 10 9 8 42 42 H 1.07998 * 126.07537 * 179.97438 * 11 10 9 43 43 H 0.97003 * 119.99646 * 359.97100 * 13 12 8 44 44 H 0.97003 * 120.00258 * 0.02562 * 18 16 14 45 45 H 1.09000 * 109.46983 * 300.00712 * 19 18 16 46 46 H 1.09003 * 109.46680 * 59.99653 * 19 18 16 47 47 H 1.08995 * 109.47186 * 299.99836 * 20 19 18 48 48 H 1.08998 * 109.46993 * 60.00059 * 20 19 18 49 49 H 0.96994 * 119.99963 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6552 -2.2002 1.1771 6 1 0.5793 -2.2889 1.0271 7 6 2.0469 -2.8934 2.4837 8 7 2.3581 -2.8337 0.0586 9 7 3.7472 -2.9197 -0.1008 10 6 3.9966 -3.5533 -1.2181 11 6 2.7803 -3.8949 -1.8141 12 6 1.7790 -3.4421 -1.0091 13 7 0.4128 -3.5774 -1.2388 14 6 -0.0251 -4.2077 -2.3467 15 8 0.7719 -4.6570 -3.1446 16 6 -1.4905 -4.3533 -2.5928 17 8 -2.2874 -3.9037 -1.7954 18 7 -1.9284 -4.9831 -3.7010 19 6 -3.3663 -5.1255 -3.9428 20 6 -3.5906 -5.8730 -5.2587 21 6 -5.0698 -6.0190 -5.5077 22 1 -5.7789 -5.6190 -4.7981 23 6 -5.5178 -6.6641 -6.6409 24 7 -4.6542 -7.1525 -7.5043 25 14 -7.3511 -6.8456 -6.9492 26 1 -7.9747 -5.5004 -7.0319 27 1 -7.5688 -7.5710 -8.2265 28 1 -7.9673 -7.6091 -5.8344 29 1 -0.3633 0.5927 -0.8395 30 1 -0.3632 -1.0234 -0.0936 31 1 -0.3633 0.4306 0.9331 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5926 -0.2722 2.1360 37 1 3.1248 -0.6302 1.3039 38 1 3.1316 -2.8816 2.5903 39 1 1.5934 -2.3677 3.3239 40 1 1.6946 -3.9248 2.4675 41 1 4.9772 -3.7780 -1.6110 42 1 2.6558 -4.4244 -2.7471 43 1 -0.2241 -3.2181 -0.6014 44 1 -1.2916 -5.3421 -4.3385 45 1 -3.8185 -5.6866 -3.1249 46 1 -3.8242 -4.1382 -4.0027 47 1 -3.1385 -5.3123 -6.0767 48 1 -3.1328 -6.8604 -5.1983 49 1 -4.9694 -7.6060 -8.3017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344422217.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:34 Heat of formation + Delta-G solvation = -27.331934 kcal Electronic energy + Delta-G solvation = -29134.517781 eV Core-core repulsion = 25097.286029 eV Total energy + Delta-G solvation = -4037.231752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81696 -41.57069 -39.77631 -38.31916 -37.08344 -36.12688 -34.85326 -34.73020 -31.75221 -31.02245 -30.16418 -28.15311 -27.67687 -27.52467 -25.68988 -24.09838 -23.21311 -22.49626 -21.60671 -21.07940 -20.91199 -19.59057 -18.59498 -18.57705 -17.77208 -17.45210 -16.70736 -16.53662 -16.48174 -16.15614 -15.99506 -15.68784 -15.29451 -15.09488 -15.05841 -14.67647 -14.45730 -14.30232 -14.14759 -13.75026 -13.36246 -13.26869 -13.14117 -13.06816 -12.92886 -12.85684 -12.74806 -12.55057 -12.51672 -12.32353 -12.27101 -11.83018 -11.68984 -11.66751 -11.58302 -11.46995 -11.40910 -10.85229 -10.60687 -10.26391 -9.97619 -9.26904 -8.22681 -6.33681 -0.09815 0.66300 0.93497 1.44040 1.46039 1.53725 1.59687 1.80341 2.06046 2.33840 2.46435 3.12611 3.17928 3.30753 3.74839 3.77721 3.94168 4.03271 4.15023 4.17602 4.31030 4.36987 4.38914 4.45777 4.63941 4.69385 4.71871 4.73547 4.76596 4.79606 4.81813 4.91233 4.95102 4.97916 5.00360 5.07329 5.20265 5.26090 5.35343 5.37911 5.42561 5.55993 5.63927 5.75917 5.77881 5.87203 6.12658 6.20213 6.47953 6.70522 6.73601 6.82024 7.35914 8.89022 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.002155 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.525786 B =12988.023462 C =13681.030528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.146 3.854 6 H 0.103 0.897 7 C -0.156 4.156 8 N -0.369 5.369 9 N -0.293 5.293 10 C 0.057 3.943 11 C -0.294 4.294 12 C 0.291 3.709 13 N -0.612 5.612 14 C 0.523 3.477 15 O -0.496 6.496 16 C 0.512 3.488 17 O -0.540 6.540 18 N -0.681 5.681 19 C 0.138 3.862 20 C 0.018 3.982 21 C -0.545 4.545 22 H 0.066 0.934 23 C 0.005 3.995 24 N -0.928 5.928 25 Si 0.966 3.034 26 H -0.267 1.267 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.213 0.787 42 H 0.160 0.840 43 H 0.427 0.573 44 H 0.417 0.583 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.008 0.992 48 H 0.009 0.991 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.665 13.597 20.055 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.152 4.152 5 C 0.045 3.955 6 H 0.121 0.879 7 C -0.214 4.214 8 N -0.158 5.158 9 N -0.115 5.115 10 C -0.129 4.129 11 C -0.325 4.325 12 C 0.071 3.929 13 N -0.262 5.262 14 C 0.304 3.696 15 O -0.367 6.367 16 C 0.292 3.708 17 O -0.418 6.418 18 N -0.332 5.332 19 C 0.016 3.984 20 C -0.020 4.020 21 C -0.583 4.583 22 H 0.084 0.916 23 C -0.194 4.194 24 N -0.567 5.567 25 Si 0.790 3.210 26 H -0.192 1.192 27 H -0.210 1.210 28 H -0.192 1.192 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.229 0.771 42 H 0.178 0.822 43 H 0.267 0.733 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.023 14.118 20.976 29.934 hybrid contribution -1.200 -0.831 -1.467 2.069 sum 14.824 13.287 19.509 27.873 Atomic orbital electron populations 1.21929 0.94610 1.01230 1.02963 1.21079 0.96108 0.96922 0.97533 1.21766 1.00758 0.95008 1.02332 1.22001 1.02435 0.91511 0.99235 1.21746 0.95563 0.93780 0.84396 0.87887 1.22114 1.03154 1.00660 0.95446 1.49173 1.03967 1.45492 1.17167 1.77326 0.89404 1.24230 1.20539 1.24161 1.00205 0.96318 0.92183 1.21744 0.90619 1.14804 1.05355 1.18122 0.83516 0.99420 0.91827 1.42258 1.04479 1.55428 1.24000 1.20070 0.89429 0.78732 0.81340 1.90743 1.55983 1.45396 1.44617 1.19645 0.87935 0.80266 0.82960 1.90755 1.56477 1.48798 1.45797 1.46030 1.10279 1.54586 1.22304 1.21544 0.77398 1.00644 0.98847 1.19181 0.96620 0.94876 0.91307 1.21421 0.92647 1.37205 1.07018 0.91592 1.25901 1.02832 0.94891 0.95742 1.70065 1.36164 1.38418 1.12093 0.85486 0.79334 0.78661 0.77501 1.19191 1.21029 1.19179 0.93025 0.93730 0.90460 0.94154 0.93002 0.93067 0.91133 0.87458 0.91050 0.91735 0.87944 0.92737 0.77054 0.82235 0.73304 0.74637 0.91603 0.91611 0.97319 0.97308 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 71.98 0.64 -1.42 16 2 C -0.10 -1.44 2.87 -10.79 -0.03 -1.47 16 3 C -0.14 -1.82 9.19 71.99 0.66 -1.16 16 4 C -0.11 -1.37 4.28 30.59 0.13 -1.24 16 5 C 0.15 2.05 2.97 44.99 0.13 2.18 16 6 H 0.10 1.26 5.18 -2.39 -0.01 1.24 16 7 C -0.16 -1.82 9.46 71.99 0.68 -1.14 16 8 N -0.37 -7.45 2.68 -324.12 -0.87 -8.31 16 9 N -0.29 -6.43 12.42 -57.14 -0.71 -7.14 16 10 C 0.06 1.19 12.00 85.19 1.02 2.21 16 11 C -0.29 -7.34 9.65 22.15 0.21 -7.13 16 12 C 0.29 6.90 7.68 131.25 1.01 7.91 16 13 N -0.61 -14.07 5.40 -309.58 -1.67 -15.74 16 14 C 0.52 14.47 7.85 87.22 0.68 15.16 16 15 O -0.50 -15.24 13.60 -3.40 -0.05 -15.29 16 16 C 0.51 15.86 7.88 87.22 0.69 16.55 16 17 O -0.54 -18.05 16.48 -3.31 -0.05 -18.10 16 18 N -0.68 -22.82 5.55 -464.55 -2.58 -25.39 16 19 C 0.14 5.41 5.61 86.38 0.48 5.90 16 20 C 0.02 0.86 5.09 29.85 0.15 1.01 16 21 C -0.54 -29.17 9.11 25.60 0.23 -28.94 16 22 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 23 C 0.01 0.28 5.46 84.65 0.46 0.75 16 24 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 25 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.64 6.19 -2.39 -0.01 0.62 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.83 7.61 -2.39 -0.02 0.81 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.16 4.41 5.83 -2.91 -0.02 4.39 16 43 H 0.43 8.27 6.48 -92.71 -0.60 7.67 16 44 H 0.42 13.38 7.94 -92.71 -0.74 12.64 16 45 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -65.02 405.53 3.18 -61.84 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.37 Total: 28.08 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 7.16 Total: 9.17 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -5.54 Total: -110.25 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.10 Total: -33.39 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -65.02 3.18 -61.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344422217.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.509 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds