Wall clock time and date at job start Tue Mar 31 2020 20:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47332 * 2 1 4 4 C 1.53008 * 109.46735 * 240.00109 * 2 1 3 5 5 C 1.53000 * 109.46957 * 175.00287 * 4 2 1 6 6 C 1.52991 * 109.46839 * 179.97438 * 5 4 2 7 7 N 1.46907 * 109.47194 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47097 * 120.00319 * 2 1 3 9 9 C 1.34775 * 119.99986 * 274.99622 * 8 2 1 10 10 O 1.21589 * 120.00064 * 359.97438 * 9 8 2 11 11 N 1.34774 * 120.00006 * 180.02562 * 9 8 2 12 12 C 1.39594 * 119.99891 * 179.97438 * 11 9 8 13 13 N 1.32266 * 119.72727 * 0.26464 * 12 11 9 14 14 C 1.31963 * 121.69068 * 180.26509 * 13 12 11 15 15 C 1.38075 * 120.95403 * 359.72759 * 14 13 12 16 16 C 1.38794 * 119.35183 * 359.97438 * 15 14 13 17 17 C 1.38781 * 118.44752 * 359.97438 * 16 15 14 18 18 O 1.35983 * 120.49767 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99537 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47141 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47494 * 119.99680 * 25 23 21 28 28 H 1.48505 * 109.47047 * 239.99860 * 25 23 21 29 29 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46576 * 299.99879 * 1 2 3 31 31 H 1.08999 * 109.47246 * 59.99822 * 1 2 3 32 32 H 1.09000 * 109.46858 * 295.00012 * 4 2 1 33 33 H 1.08999 * 109.46930 * 54.99761 * 4 2 1 34 34 H 1.08995 * 109.46668 * 299.99688 * 5 4 2 35 35 H 1.08998 * 109.47206 * 59.99990 * 5 4 2 36 36 H 1.09003 * 109.47836 * 299.99587 * 6 5 4 37 37 H 1.09004 * 109.47809 * 59.99711 * 6 5 4 38 38 H 1.00898 * 111.00421 * 179.97438 * 7 6 5 39 39 H 1.00899 * 111.00162 * 303.95849 * 7 6 5 40 40 H 0.97000 * 120.00232 * 94.99664 * 8 2 1 41 41 H 0.97000 * 120.00212 * 359.97438 * 11 9 8 42 42 H 1.08000 * 119.52770 * 179.74706 * 14 13 12 43 43 H 1.07997 * 120.32417 * 179.97438 * 15 14 13 44 44 H 1.07993 * 120.77636 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47490 * 59.99651 * 19 18 17 46 46 H 1.09001 * 109.47232 * 299.99005 * 19 18 17 47 47 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 48 48 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 49 49 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 3.5648 -0.6134 -1.3138 6 6 4.0747 -1.3352 -2.5627 7 7 5.5387 -1.2311 -2.6250 8 7 2.0183 -0.6907 1.1961 9 6 2.1471 -0.0184 2.3571 10 8 1.8585 1.1615 2.4116 11 7 2.5969 -0.6536 3.4573 12 6 2.7307 0.0429 4.6597 13 7 2.4097 1.3248 4.7143 14 6 2.5260 2.0217 5.8289 15 6 2.9854 1.4327 6.9901 16 6 3.3285 0.0878 6.9811 17 6 3.1951 -0.6206 5.7952 18 8 3.5197 -1.9399 5.7392 19 6 3.9949 -2.5427 6.9446 20 6 4.3059 -4.0188 6.6883 21 6 4.8077 -4.6544 7.9592 22 1 4.8964 -4.0644 8.8595 23 6 5.1546 -5.9887 7.9725 24 7 5.0471 -6.7070 6.8760 25 14 5.7759 -6.7767 9.5479 26 1 5.8033 -5.7618 10.6317 27 1 4.8723 -7.8900 9.9344 28 1 7.1468 -7.3047 9.3301 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4368 -1.3575 35 1 3.9994 -1.0730 -0.4261 36 1 3.7864 -2.3855 -2.5187 37 1 3.6401 -0.8761 -3.4507 38 1 5.9003 -1.7008 -3.4415 39 1 5.8340 -0.2666 -2.6018 40 1 2.2490 -1.6318 1.1525 41 1 2.8275 -1.5948 3.4138 42 1 2.2576 3.0678 5.8330 43 1 3.0770 2.0127 7.8964 44 1 3.6899 -0.3962 7.8763 45 1 3.2305 -2.4617 7.7174 46 1 4.9001 -2.0323 7.2737 47 1 3.4007 -4.5290 6.3593 48 1 5.0702 -4.1002 5.9154 49 1 5.2908 -7.6457 6.8853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415499571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:25 Heat of formation + Delta-G solvation = -39.424020 kcal Electronic energy + Delta-G solvation = -28561.776652 eV Core-core repulsion = 24524.020548 eV Total energy + Delta-G solvation = -4037.756104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87646 -39.65717 -37.83029 -37.19842 -35.27270 -34.55301 -33.45430 -32.15195 -31.42827 -30.51718 -29.88771 -28.75621 -25.46658 -25.36452 -23.79705 -22.79490 -21.85083 -21.45781 -20.83465 -20.50571 -18.72908 -18.00198 -17.41478 -16.38832 -16.17515 -16.04152 -15.92866 -15.72970 -15.40502 -15.10815 -14.68024 -14.54392 -14.42850 -13.98647 -13.87389 -13.79585 -13.51700 -13.20668 -12.81019 -12.68030 -12.39642 -12.34293 -11.97342 -11.89397 -11.70962 -11.44755 -11.15808 -11.02685 -11.00025 -10.90101 -10.65982 -10.64255 -10.30054 -10.02346 -9.76122 -9.38259 -9.21464 -9.06032 -9.03661 -8.99417 -8.51255 -7.57775 -6.16828 -4.21520 1.32586 1.51495 2.51477 3.22649 3.28980 3.29933 3.32983 3.57839 3.97533 4.08888 4.11592 4.35151 4.47341 4.66439 4.73451 4.84684 4.97665 5.00890 5.10300 5.13858 5.20175 5.25322 5.28640 5.32208 5.45836 5.47924 5.52558 5.56950 5.74986 5.88395 5.92232 5.93135 6.00158 6.08727 6.11018 6.23613 6.42607 6.49021 6.57385 6.64517 6.77135 6.90720 7.06667 7.38244 7.54638 7.66641 7.79142 7.90627 8.16000 8.31777 8.70520 8.83958 9.43419 10.94667 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008603 B = 0.002629 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.897491 B =10647.056880 C =13031.207618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 H 0.088 0.912 4 C -0.126 4.126 5 C -0.120 4.120 6 C 0.061 3.939 7 N -0.853 5.853 8 N -0.740 5.740 9 C 0.698 3.302 10 O -0.537 6.537 11 N -0.662 5.662 12 C 0.348 3.652 13 N -0.441 5.441 14 C 0.076 3.924 15 C -0.164 4.164 16 C -0.147 4.147 17 C 0.064 3.936 18 O -0.316 6.316 19 C 0.066 3.934 20 C 0.026 3.974 21 C -0.527 4.527 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.889 5.889 25 Si 0.898 3.102 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.341 0.659 39 H 0.340 0.660 40 H 0.396 0.604 41 H 0.420 0.580 42 H 0.155 0.845 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 13.833 -15.363 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.158 4.158 6 C -0.070 4.070 7 N -0.383 5.383 8 N -0.398 5.398 9 C 0.397 3.603 10 O -0.409 6.409 11 N -0.311 5.311 12 C 0.114 3.886 13 N -0.156 5.156 14 C -0.081 4.081 15 C -0.185 4.185 16 C -0.173 4.173 17 C 0.012 3.988 18 O -0.229 6.229 19 C -0.008 4.008 20 C -0.011 4.011 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.230 0.770 41 H 0.257 0.743 42 H 0.173 0.827 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.311 14.588 -15.706 22.346 hybrid contribution 0.781 -1.369 0.946 1.838 sum -5.530 13.219 -14.761 20.572 Atomic orbital electron populations 1.22211 0.95453 1.02122 1.02579 1.20785 0.93638 0.97257 0.82521 0.89352 1.21874 0.95756 1.01433 0.97346 1.21595 0.94802 1.00771 0.98648 1.21822 0.87763 1.00803 0.96610 1.58665 1.10411 1.20837 1.48341 1.45256 1.71960 1.13771 1.08764 1.15952 0.78912 0.85372 0.80053 1.91015 1.53391 1.13136 1.83332 1.42520 1.67528 1.14161 1.06925 1.17495 0.98559 0.88807 0.83730 1.67631 1.15935 1.03931 1.28134 1.22405 0.98526 0.99753 0.87376 1.21873 1.01861 0.94859 0.99953 1.21580 1.03024 0.95205 0.97534 1.19547 0.99666 0.86082 0.93480 1.86099 1.79229 1.18246 1.39339 1.23380 0.96906 0.97165 0.83306 1.19127 0.98033 0.85684 0.98227 1.20988 1.44789 0.95084 0.95659 0.92294 1.24982 0.95388 0.97185 0.96581 1.69975 1.47677 1.07956 1.27066 0.86435 0.78565 0.79349 0.83069 1.19628 1.20815 1.20807 0.92507 0.91786 0.91829 0.91073 0.90394 0.92028 0.90658 0.90993 0.95792 0.84671 0.84745 0.76972 0.74293 0.82728 0.84885 0.83802 0.92994 0.92973 0.95385 0.95351 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.16 1.50 2.58 -67.93 -0.17 1.33 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -0.83 4.75 -26.73 -0.13 -0.96 16 5 C -0.12 -0.93 5.36 -26.74 -0.14 -1.07 16 6 C 0.06 0.43 6.79 -3.82 -0.03 0.40 16 7 N -0.85 -6.46 9.62 -10.37 -0.10 -6.56 16 8 N -0.74 -7.92 4.53 -58.67 -0.27 -8.19 16 9 C 0.70 10.41 8.50 -86.92 -0.74 9.67 16 10 O -0.54 -9.84 14.26 5.29 0.08 -9.76 16 11 N -0.66 -10.04 5.40 -15.67 -0.08 -10.13 16 12 C 0.35 5.96 7.45 -154.43 -1.15 4.81 16 13 N -0.44 -7.64 7.87 -12.22 -0.10 -7.74 16 14 C 0.08 1.07 11.17 -17.56 -0.20 0.87 16 15 C -0.16 -2.11 10.10 -39.44 -0.40 -2.51 16 16 C -0.15 -2.19 9.14 -39.17 -0.36 -2.55 16 17 C 0.06 1.09 6.72 -38.92 -0.26 0.83 16 18 O -0.32 -5.92 9.39 -19.69 -0.18 -6.10 16 19 C 0.07 1.32 4.70 37.16 0.17 1.50 16 20 C 0.03 0.65 5.34 -27.88 -0.15 0.51 16 21 C -0.53 -14.14 9.11 -34.44 -0.31 -14.45 16 22 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 25 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 38 H 0.34 2.03 9.08 -39.29 -0.36 1.67 16 39 H 0.34 2.27 8.99 -39.29 -0.35 1.92 16 40 H 0.40 3.45 8.62 -40.82 -0.35 3.09 16 41 H 0.42 5.69 8.06 -40.82 -0.33 5.36 16 42 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.14 1.99 6.44 -52.49 -0.34 1.65 16 45 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 46 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -33.42 407.35 -10.35 -43.76 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.94 Total: 8.88 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.61 Total: -1.15 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.19 Total: -57.50 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.11 Total: -15.86 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.42 -10.35 -43.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415499571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.338 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds