Wall clock time and date at job start Tue Mar 31 2020 20:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47332 * 2 1 4 4 C 1.53008 * 109.46735 * 240.00109 * 2 1 3 5 5 C 1.53000 * 109.46957 * 175.00287 * 4 2 1 6 6 C 1.52991 * 109.46839 * 179.97438 * 5 4 2 7 7 N 1.46907 * 109.47194 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47097 * 120.00319 * 2 1 3 9 9 C 1.34775 * 119.99986 * 274.99622 * 8 2 1 10 10 O 1.21589 * 120.00064 * 359.97438 * 9 8 2 11 11 N 1.34774 * 120.00006 * 180.02562 * 9 8 2 12 12 C 1.39594 * 119.99891 * 179.97438 * 11 9 8 13 13 N 1.32266 * 119.72727 * 0.26464 * 12 11 9 14 14 C 1.31963 * 121.69068 * 180.26509 * 13 12 11 15 15 C 1.38075 * 120.95403 * 359.72759 * 14 13 12 16 16 C 1.38794 * 119.35183 * 359.97438 * 15 14 13 17 17 C 1.38781 * 118.44752 * 359.97438 * 16 15 14 18 18 O 1.35983 * 120.49767 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99537 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47141 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47494 * 119.99680 * 25 23 21 28 28 H 1.48505 * 109.47047 * 239.99860 * 25 23 21 29 29 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46576 * 299.99879 * 1 2 3 31 31 H 1.08999 * 109.47246 * 59.99822 * 1 2 3 32 32 H 1.09000 * 109.46858 * 295.00012 * 4 2 1 33 33 H 1.08999 * 109.46930 * 54.99761 * 4 2 1 34 34 H 1.08995 * 109.46668 * 299.99688 * 5 4 2 35 35 H 1.08998 * 109.47206 * 59.99990 * 5 4 2 36 36 H 1.09003 * 109.47836 * 299.99587 * 6 5 4 37 37 H 1.09004 * 109.47809 * 59.99711 * 6 5 4 38 38 H 1.00898 * 111.00421 * 179.97438 * 7 6 5 39 39 H 1.00899 * 111.00162 * 303.95849 * 7 6 5 40 40 H 0.97000 * 120.00232 * 94.99664 * 8 2 1 41 41 H 0.97000 * 120.00212 * 359.97438 * 11 9 8 42 42 H 1.08000 * 119.52770 * 179.74706 * 14 13 12 43 43 H 1.07997 * 120.32417 * 179.97438 * 15 14 13 44 44 H 1.07993 * 120.77636 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.47490 * 59.99651 * 19 18 17 46 46 H 1.09001 * 109.47232 * 299.99005 * 19 18 17 47 47 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 48 48 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 49 49 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 3.5648 -0.6134 -1.3138 6 6 4.0747 -1.3352 -2.5627 7 7 5.5387 -1.2311 -2.6250 8 7 2.0183 -0.6907 1.1961 9 6 2.1471 -0.0184 2.3571 10 8 1.8585 1.1615 2.4116 11 7 2.5969 -0.6536 3.4573 12 6 2.7307 0.0429 4.6597 13 7 2.4097 1.3248 4.7143 14 6 2.5260 2.0217 5.8289 15 6 2.9854 1.4327 6.9901 16 6 3.3285 0.0878 6.9811 17 6 3.1951 -0.6206 5.7952 18 8 3.5197 -1.9399 5.7392 19 6 3.9949 -2.5427 6.9446 20 6 4.3059 -4.0188 6.6883 21 6 4.8077 -4.6544 7.9592 22 1 4.8964 -4.0644 8.8595 23 6 5.1546 -5.9887 7.9725 24 7 5.0471 -6.7070 6.8760 25 14 5.7759 -6.7767 9.5479 26 1 5.8033 -5.7618 10.6317 27 1 4.8723 -7.8900 9.9344 28 1 7.1468 -7.3047 9.3301 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4368 -1.3575 35 1 3.9994 -1.0730 -0.4261 36 1 3.7864 -2.3855 -2.5187 37 1 3.6401 -0.8761 -3.4507 38 1 5.9003 -1.7008 -3.4415 39 1 5.8340 -0.2666 -2.6018 40 1 2.2490 -1.6318 1.1525 41 1 2.8275 -1.5948 3.4138 42 1 2.2576 3.0678 5.8330 43 1 3.0770 2.0127 7.8964 44 1 3.6899 -0.3962 7.8763 45 1 3.2305 -2.4617 7.7174 46 1 4.9001 -2.0323 7.2737 47 1 3.4007 -4.5290 6.3593 48 1 5.0702 -4.1002 5.9154 49 1 5.2908 -7.6457 6.8853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415499571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:24 Heat of formation + Delta-G solvation = -62.906050 kcal Electronic energy + Delta-G solvation = -28562.794909 eV Core-core repulsion = 24524.020548 eV Total energy + Delta-G solvation = -4038.774362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06936 -40.80079 -39.15878 -38.03619 -36.07325 -35.71800 -35.42329 -33.10236 -32.75375 -32.01943 -30.78532 -29.93451 -27.15553 -26.11495 -25.10539 -24.05185 -23.00941 -22.36177 -21.97151 -21.59518 -19.91366 -19.28822 -18.73334 -18.02048 -17.30765 -17.18489 -17.01299 -16.76213 -16.47889 -16.31670 -16.08352 -15.65072 -15.41015 -15.14329 -14.96424 -14.79400 -14.39135 -14.33329 -14.14283 -14.02753 -13.61110 -13.35178 -13.27286 -13.02022 -12.77807 -12.76246 -12.42790 -12.34715 -12.17215 -11.84079 -11.82495 -11.69623 -11.62502 -11.57596 -11.49411 -11.37135 -10.60854 -10.40727 -10.21621 -10.05517 -9.59999 -8.80105 -8.25106 -6.37462 0.16965 0.32188 1.42690 1.43053 1.46072 1.55954 2.13233 2.13384 2.45187 2.93697 2.98280 3.10243 3.49132 3.60371 3.85552 3.88308 4.00182 4.04633 4.15477 4.19885 4.30466 4.30711 4.35192 4.49540 4.49871 4.59477 4.67774 4.75909 4.80450 4.87828 4.90518 4.96195 5.04932 5.15827 5.24177 5.29071 5.32054 5.33153 5.40094 5.51348 5.53137 5.62261 5.73035 5.85738 6.09041 6.24938 6.36694 6.57442 6.74885 6.77624 7.18812 7.32566 7.57164 8.87758 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008603 B = 0.002629 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.897491 B =10647.056880 C =13031.207618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.063 3.937 7 N -0.869 5.869 8 N -0.726 5.726 9 C 0.694 3.306 10 O -0.574 6.574 11 N -0.663 5.663 12 C 0.329 3.671 13 N -0.472 5.472 14 C 0.074 3.926 15 C -0.148 4.148 16 C -0.147 4.147 17 C 0.038 3.962 18 O -0.329 6.329 19 C 0.084 3.916 20 C 0.030 3.970 21 C -0.543 4.543 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.929 5.929 25 Si 0.970 3.030 26 H -0.258 1.258 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.349 0.651 39 H 0.344 0.656 40 H 0.407 0.593 41 H 0.423 0.577 42 H 0.185 0.815 43 H 0.175 0.825 44 H 0.157 0.843 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.001 0.999 48 H 0.001 0.999 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 14.648 -14.527 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.068 4.068 7 N -0.400 5.400 8 N -0.383 5.383 9 C 0.394 3.606 10 O -0.449 6.449 11 N -0.313 5.313 12 C 0.096 3.904 13 N -0.187 5.187 14 C -0.083 4.083 15 C -0.169 4.169 16 C -0.174 4.174 17 C -0.013 4.013 18 O -0.243 6.243 19 C 0.009 3.991 20 C -0.007 4.007 21 C -0.581 4.581 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.795 3.205 26 H -0.181 1.181 27 H -0.204 1.204 28 H -0.205 1.205 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.243 0.757 41 H 0.261 0.739 42 H 0.202 0.798 43 H 0.193 0.807 44 H 0.175 0.825 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.428 15.389 -14.901 22.364 hybrid contribution 0.791 -1.501 0.643 1.814 sum -5.637 13.888 -14.258 20.687 Atomic orbital electron populations 1.22154 0.94813 1.02627 1.02137 1.20931 0.94082 0.96517 0.82842 0.91426 1.21804 0.94816 1.01998 0.96504 1.21538 0.95553 1.00154 0.98231 1.21799 0.87595 1.00782 0.96607 1.58677 1.10922 1.21331 1.49090 1.45247 1.70838 1.14180 1.08000 1.16148 0.78644 0.85117 0.80727 1.90971 1.55174 1.14755 1.84026 1.42560 1.67508 1.14291 1.06895 1.17698 0.99218 0.89143 0.84298 1.67681 1.16954 1.04170 1.29939 1.23053 0.97295 1.00941 0.86980 1.22262 0.99577 0.94062 1.00991 1.21883 1.02316 0.96137 0.97016 1.19691 1.01585 0.85336 0.94647 1.86027 1.79982 1.19678 1.38610 1.22949 0.97863 0.94299 0.83949 1.18944 0.95843 0.88999 0.96930 1.21428 1.44438 0.95639 0.96585 0.91111 1.25961 0.95556 0.97944 1.00054 1.70108 1.48860 1.08386 1.29473 0.85315 0.77810 0.78445 0.78972 1.18145 1.20445 1.20478 0.91467 0.94821 0.89639 0.89787 0.88224 0.92813 0.92837 0.90970 0.94281 0.83730 0.84369 0.75723 0.73875 0.79791 0.80715 0.82548 0.91811 0.91849 0.98026 0.98070 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 2 C 0.16 2.94 2.58 45.00 0.12 3.06 16 3 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.11 -1.34 4.75 30.60 0.15 -1.19 16 5 C -0.12 -1.76 5.36 30.59 0.16 -1.59 16 6 C 0.06 0.82 6.79 86.30 0.59 1.40 16 7 N -0.87 -12.72 9.62 -186.71 -1.80 -14.51 16 8 N -0.73 -15.99 4.53 -457.81 -2.08 -18.07 16 9 C 0.69 21.60 8.50 179.06 1.52 23.12 16 10 O -0.57 -21.90 14.26 -4.00 -0.06 -21.96 16 11 N -0.66 -21.02 5.40 -321.76 -1.74 -22.76 16 12 C 0.33 11.49 7.45 132.98 0.99 12.48 16 13 N -0.47 -16.32 7.87 -192.58 -1.52 -17.83 16 14 C 0.07 1.95 11.17 84.63 0.95 2.89 16 15 C -0.15 -3.37 10.10 22.36 0.23 -3.14 16 16 C -0.15 -4.12 9.14 22.53 0.21 -3.92 16 17 C 0.04 1.31 6.72 22.70 0.15 1.46 16 18 O -0.33 -12.57 9.39 -93.36 -0.88 -13.45 16 19 C 0.08 3.33 4.70 71.98 0.34 3.67 16 20 C 0.03 1.53 5.34 29.85 0.16 1.69 16 21 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 22 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 23 C 0.00 0.20 5.46 84.65 0.46 0.66 16 24 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 25 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 1.04 7.75 -2.39 -0.02 1.02 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.35 3.92 9.08 -89.70 -0.81 3.10 16 39 H 0.34 4.49 8.99 -89.69 -0.81 3.68 16 40 H 0.41 7.23 8.62 -92.71 -0.80 6.43 16 41 H 0.42 12.19 8.06 -92.71 -0.75 11.44 16 42 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 43 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.16 3.93 6.44 -2.91 -0.02 3.92 16 45 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 46 H 0.06 2.36 7.70 -2.39 -0.02 2.34 16 47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -74.40 407.35 -0.99 -75.39 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -2.17 Total: 33.66 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.93 Total: 9.58 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -6.84 Total: -127.49 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.93 Total: -35.40 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.40 -0.99 -75.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415499571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.484 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds