Wall clock time and date at job start Tue Mar 31 2020 20:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 C 1.52996 * 109.47151 * 54.64123 * 3 2 1 5 5 C 1.53002 * 109.46745 * 174.64350 * 3 2 1 6 6 H 1.09000 * 109.46727 * 174.66507 * 5 3 2 7 7 C 1.52991 * 109.47516 * 54.66325 * 5 3 2 8 8 N 1.46500 * 109.47038 * 294.65912 * 5 3 2 9 9 C 1.34776 * 120.00432 * 205.00312 * 8 5 3 10 10 O 1.21600 * 119.99518 * 0.02562 * 9 8 5 11 11 N 1.34770 * 120.00296 * 180.02562 * 9 8 5 12 12 C 1.40195 * 120.00220 * 179.97438 * 11 9 8 13 13 C 1.40407 * 125.97245 * 0.02562 * 12 11 9 14 14 C 1.35240 * 107.86800 * 179.70010 * 13 12 11 15 15 N 1.34957 * 107.85927 * 0.26109 * 14 13 12 16 16 C 1.46502 * 125.97686 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47393 * 124.99623 * 16 15 14 18 18 H 1.07997 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00509 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47106 * 90.00439 * 21 19 17 23 23 H 1.48499 * 109.46820 * 210.00122 * 21 19 17 24 24 H 1.48494 * 109.47191 * 329.99987 * 21 19 17 25 25 N 1.31211 * 125.97717 * 180.17442 * 12 11 9 26 26 C 1.52997 * 109.46954 * 294.63694 * 3 2 1 27 27 C 1.53004 * 117.49928 * 135.82335 * 26 3 2 28 28 C 1.53000 * 60.00234 * 252.51210 * 27 26 3 29 29 H 1.08999 * 109.47517 * 309.32937 * 1 2 3 30 30 H 1.09000 * 109.47138 * 69.33227 * 1 2 3 31 31 H 1.09003 * 109.47029 * 189.32824 * 1 2 3 32 32 H 1.09002 * 109.46597 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46777 * 299.99675 * 4 3 2 34 34 H 1.08994 * 109.47341 * 59.99856 * 4 3 2 35 35 H 1.09002 * 109.47191 * 185.88184 * 7 5 3 36 36 H 1.09000 * 109.47429 * 305.88696 * 7 5 3 37 37 H 1.09000 * 109.47076 * 65.88569 * 7 5 3 38 38 H 0.97004 * 120.00043 * 25.00851 * 8 5 3 39 39 H 0.97004 * 120.00179 * 0.02562 * 11 9 8 40 40 H 1.08000 * 126.06105 * 359.95884 * 13 12 11 41 41 H 1.08004 * 126.06634 * 180.26432 * 14 13 12 42 42 H 1.09000 * 109.46853 * 245.00081 * 16 15 14 43 43 H 1.08999 * 109.46908 * 4.99430 * 16 15 14 44 44 H 0.96998 * 120.00152 * 180.02562 * 20 19 17 45 45 H 1.09001 * 115.55589 * 281.53354 * 26 3 2 46 46 H 1.09007 * 117.49575 * 0.02562 * 27 26 3 47 47 H 1.08996 * 117.49883 * 145.01972 * 27 26 3 48 48 H 1.09001 * 117.49865 * 252.51284 * 28 27 26 49 49 H 1.08999 * 117.51904 * 107.47774 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4551 2.1109 1.1764 5 6 3.5297 1.1871 0.1347 6 1 3.9808 2.1749 0.0397 7 6 4.0696 0.2719 -0.9660 8 7 3.8613 0.6229 1.4454 9 6 5.0619 0.8751 2.0035 10 8 5.8697 1.5714 1.4193 11 7 5.3671 0.3556 3.2090 12 6 6.6161 0.6175 3.7893 13 6 7.6381 1.4003 3.2288 14 6 8.6746 1.4133 4.0974 15 7 8.3290 0.6641 5.1654 16 6 9.1609 0.4108 6.3445 17 6 8.4067 0.8099 7.5866 18 1 7.4074 1.2116 7.5059 19 6 8.9919 0.6612 8.8261 20 7 10.2086 0.1715 8.9244 21 14 8.0566 1.1552 10.3658 22 1 7.2809 -0.0072 10.8681 23 1 9.0176 1.5966 11.4084 24 1 7.1282 2.2687 10.0451 25 7 7.0356 0.1717 4.9499 26 6 1.6683 2.0159 -1.3112 27 6 1.2218 3.4769 -1.2275 28 6 0.2030 2.3833 -1.5543 29 1 -0.3634 0.6513 0.7949 30 1 -0.3633 0.3627 -0.9615 31 1 -0.3633 -1.0141 0.1666 32 1 1.8981 3.1068 1.1760 33 1 0.3726 2.1951 1.0803 34 1 1.6987 1.6047 2.1104 35 1 5.1350 0.1036 -0.8086 36 1 3.5428 -0.6819 -0.9363 37 1 3.9157 0.7419 -1.9373 38 1 3.2168 0.0677 1.9115 39 1 4.7228 -0.2002 3.6749 40 1 7.6012 1.9060 2.2752 41 1 9.6123 1.9314 3.9607 42 1 9.4075 -0.6497 6.3940 43 1 10.0788 0.9943 6.2736 44 1 10.6201 0.0666 9.7965 45 1 2.2629 1.7198 -2.1754 46 1 1.1721 3.9321 -0.2382 47 1 1.5229 4.1423 -2.0365 48 1 -0.1661 2.3292 -2.5785 49 1 -0.5173 2.1184 -0.7804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416869083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:47 Heat of formation + Delta-G solvation = 48.031712 kcal Electronic energy + Delta-G solvation = -29266.143472 eV Core-core repulsion = 25232.179733 eV Total energy + Delta-G solvation = -4033.963739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96231 -40.42030 -39.29154 -36.34469 -35.60820 -34.52555 -33.33445 -31.62283 -30.49949 -29.94646 -29.20627 -27.41273 -26.57587 -24.58738 -23.67537 -22.90346 -22.61470 -21.24449 -20.30284 -20.00919 -19.50207 -18.08295 -17.03733 -16.83491 -16.54501 -16.16611 -15.97730 -15.36995 -15.26036 -15.17574 -14.76370 -14.37745 -14.17822 -13.94326 -13.80367 -13.40913 -13.04533 -12.76644 -12.64991 -12.49375 -12.36925 -12.27705 -12.17794 -12.04109 -11.73089 -11.58357 -11.29996 -11.20622 -11.01415 -10.86959 -10.64498 -10.51734 -10.37548 -10.23091 -10.01413 -9.81434 -9.61995 -9.45527 -9.14940 -8.60674 -8.04415 -7.35618 -6.21582 -4.26424 2.42867 2.72717 3.10703 3.18278 3.25302 3.30934 3.36106 3.52746 3.65360 3.91150 4.14307 4.26285 4.32165 4.39142 4.45896 4.52373 4.60791 4.82970 4.95484 5.07403 5.11709 5.13391 5.20071 5.21493 5.33200 5.36654 5.42941 5.45437 5.52530 5.60015 5.65649 5.71399 5.81032 5.85533 5.90127 6.19448 6.29972 6.40939 6.59763 6.65502 6.81425 6.92663 7.06681 7.17247 7.56233 7.72850 7.87373 8.04756 8.11762 8.67447 8.71675 8.84560 9.38944 10.87043 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.002117 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.024098 B =13221.618244 C =13821.503466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.369 6.369 3 C 0.139 3.861 4 C -0.186 4.186 5 C 0.186 3.814 6 H 0.102 0.898 7 C -0.163 4.163 8 N -0.736 5.736 9 C 0.714 3.286 10 O -0.569 6.569 11 N -0.644 5.644 12 C 0.277 3.723 13 C -0.286 4.286 14 C 0.050 3.950 15 N -0.321 5.321 16 C 0.259 3.741 17 C -0.527 4.527 18 H 0.068 0.932 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.309 5.309 26 C -0.176 4.176 27 C -0.176 4.176 28 C -0.181 4.181 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.399 0.601 39 H 0.406 0.594 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.267 0.733 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.301 2.784 -21.532 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.288 6.288 3 C 0.099 3.901 4 C -0.243 4.243 5 C 0.081 3.919 6 H 0.120 0.880 7 C -0.221 4.221 8 N -0.392 5.392 9 C 0.413 3.587 10 O -0.444 6.444 11 N -0.294 5.294 12 C 0.023 3.977 13 C -0.317 4.317 14 C -0.100 4.100 15 N -0.103 5.103 16 C 0.141 3.859 17 C -0.565 4.565 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.140 5.140 26 C -0.195 4.195 27 C -0.213 4.213 28 C -0.218 4.218 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.234 0.766 39 H 0.241 0.759 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.133 0.867 46 H 0.121 0.879 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.502 2.490 -20.810 28.629 hybrid contribution -1.058 0.312 0.680 1.296 sum -20.560 2.802 -20.130 28.910 Atomic orbital electron populations 1.23094 0.81609 1.02568 1.00789 1.87975 1.19536 1.26454 1.94850 1.21172 0.92935 0.83417 0.92539 1.22562 1.01502 1.01538 0.98684 1.20685 0.90539 0.98772 0.81945 0.88017 1.22161 1.01989 1.00438 0.97501 1.45041 1.16272 1.56474 1.21410 1.15616 0.82421 0.80331 0.80287 1.90860 1.48324 1.42156 1.63084 1.41392 1.15205 1.53716 1.19069 1.18786 0.86454 0.99448 0.93032 1.21512 0.93480 1.11988 1.04751 1.22548 1.00502 0.98119 0.88827 1.49037 1.10025 1.35297 1.15958 1.19721 0.88478 0.98487 0.79195 1.21262 1.02117 1.43261 0.89866 0.91331 1.24950 0.95049 0.94867 0.99289 1.69920 1.13614 1.44719 1.25149 0.86328 0.79434 0.78970 0.81758 1.20370 1.21011 1.19749 1.77321 0.96539 1.24981 1.15148 1.22853 0.98629 0.98343 0.99687 1.23164 1.03290 0.91085 1.03761 1.23159 0.92013 1.03686 1.02950 0.93545 0.92825 0.89994 0.90563 0.91710 0.91175 0.91721 0.91455 0.91892 0.76617 0.75943 0.82179 0.81593 0.93794 0.92567 0.92365 0.86687 0.87902 0.88483 0.88518 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.25 101.05 0.93 1.02 16 2 O -0.37 -2.96 9.09 -35.23 -0.32 -3.28 16 3 C 0.14 1.05 0.47 -90.62 -0.04 1.01 16 4 C -0.19 -1.31 6.60 37.16 0.25 -1.06 16 5 C 0.19 1.80 1.95 -67.93 -0.13 1.66 16 6 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 7 C -0.16 -1.57 9.09 37.15 0.34 -1.23 16 8 N -0.74 -7.90 4.31 -58.68 -0.25 -8.16 16 9 C 0.71 10.69 8.50 -86.93 -0.74 9.95 16 10 O -0.57 -10.25 13.13 5.28 0.07 -10.18 16 11 N -0.64 -10.30 5.45 -15.50 -0.08 -10.38 16 12 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 13 C -0.29 -5.82 9.61 -39.83 -0.38 -6.21 16 14 C 0.05 1.02 11.44 -17.25 -0.20 0.83 16 15 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 16 C 0.26 6.66 6.26 -5.19 -0.03 6.63 16 17 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.52 13.29 55.43 0.74 -24.79 16 21 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 N -0.31 -7.24 12.42 31.44 0.39 -6.84 16 26 C -0.18 -1.15 5.02 -90.62 -0.46 -1.61 16 27 C -0.18 -1.02 9.69 -26.73 -0.26 -1.28 16 28 C -0.18 -0.95 7.86 -26.73 -0.21 -1.16 16 29 H 0.05 0.23 5.67 -51.93 -0.29 -0.06 16 30 H 0.05 0.27 5.40 -51.93 -0.28 -0.01 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.56 6.65 -51.93 -0.35 0.21 16 33 H 0.06 0.38 5.11 -51.93 -0.27 0.11 16 34 H 0.07 0.53 7.11 -51.93 -0.37 0.16 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.66 7.36 -51.93 -0.38 0.28 16 37 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 38 H 0.40 3.56 7.86 -40.82 -0.32 3.24 16 39 H 0.41 5.35 8.84 -40.82 -0.36 4.98 16 40 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 41 H 0.17 2.78 8.06 -52.48 -0.42 2.36 16 42 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.12 0.77 6.57 -51.93 -0.34 0.43 16 46 H 0.10 0.59 5.89 -51.93 -0.31 0.29 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.47 5.14 -51.93 -0.27 0.20 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -32.87 385.46 -8.59 -41.46 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.08 Total: 8.23 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.60 Total: -0.52 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.56 Total: -58.01 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.25 Total: -13.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.87 -8.59 -41.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416869083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.490 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds