Wall clock time and date at job start Tue Mar 31 2020 20:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 C 1.52996 * 109.47151 * 54.64123 * 3 2 1 5 5 C 1.53002 * 109.46745 * 174.64350 * 3 2 1 6 6 H 1.09000 * 109.46727 * 174.66507 * 5 3 2 7 7 C 1.52991 * 109.47516 * 54.66325 * 5 3 2 8 8 N 1.46500 * 109.47038 * 294.65912 * 5 3 2 9 9 C 1.34776 * 120.00432 * 205.00312 * 8 5 3 10 10 O 1.21600 * 119.99518 * 0.02562 * 9 8 5 11 11 N 1.34770 * 120.00296 * 180.02562 * 9 8 5 12 12 C 1.40195 * 120.00220 * 179.97438 * 11 9 8 13 13 C 1.40407 * 125.97245 * 0.02562 * 12 11 9 14 14 C 1.35240 * 107.86800 * 179.70010 * 13 12 11 15 15 N 1.34957 * 107.85927 * 0.26109 * 14 13 12 16 16 C 1.46502 * 125.97686 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47393 * 124.99623 * 16 15 14 18 18 H 1.07997 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00509 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47106 * 90.00439 * 21 19 17 23 23 H 1.48499 * 109.46820 * 210.00122 * 21 19 17 24 24 H 1.48494 * 109.47191 * 329.99987 * 21 19 17 25 25 N 1.31211 * 125.97717 * 180.17442 * 12 11 9 26 26 C 1.52997 * 109.46954 * 294.63694 * 3 2 1 27 27 C 1.53004 * 117.49928 * 135.82335 * 26 3 2 28 28 C 1.53000 * 60.00234 * 252.51210 * 27 26 3 29 29 H 1.08999 * 109.47517 * 309.32937 * 1 2 3 30 30 H 1.09000 * 109.47138 * 69.33227 * 1 2 3 31 31 H 1.09003 * 109.47029 * 189.32824 * 1 2 3 32 32 H 1.09002 * 109.46597 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46777 * 299.99675 * 4 3 2 34 34 H 1.08994 * 109.47341 * 59.99856 * 4 3 2 35 35 H 1.09002 * 109.47191 * 185.88184 * 7 5 3 36 36 H 1.09000 * 109.47429 * 305.88696 * 7 5 3 37 37 H 1.09000 * 109.47076 * 65.88569 * 7 5 3 38 38 H 0.97004 * 120.00043 * 25.00851 * 8 5 3 39 39 H 0.97004 * 120.00179 * 0.02562 * 11 9 8 40 40 H 1.08000 * 126.06105 * 359.95884 * 13 12 11 41 41 H 1.08004 * 126.06634 * 180.26432 * 14 13 12 42 42 H 1.09000 * 109.46853 * 245.00081 * 16 15 14 43 43 H 1.08999 * 109.46908 * 4.99430 * 16 15 14 44 44 H 0.96998 * 120.00152 * 180.02562 * 20 19 17 45 45 H 1.09001 * 115.55589 * 281.53354 * 26 3 2 46 46 H 1.09007 * 117.49575 * 0.02562 * 27 26 3 47 47 H 1.08996 * 117.49883 * 145.01972 * 27 26 3 48 48 H 1.09001 * 117.49865 * 252.51284 * 28 27 26 49 49 H 1.08999 * 117.51904 * 107.47774 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4551 2.1109 1.1764 5 6 3.5297 1.1871 0.1347 6 1 3.9808 2.1749 0.0397 7 6 4.0696 0.2719 -0.9660 8 7 3.8613 0.6229 1.4454 9 6 5.0619 0.8751 2.0035 10 8 5.8697 1.5714 1.4193 11 7 5.3671 0.3556 3.2090 12 6 6.6161 0.6175 3.7893 13 6 7.6381 1.4003 3.2288 14 6 8.6746 1.4133 4.0974 15 7 8.3290 0.6641 5.1654 16 6 9.1609 0.4108 6.3445 17 6 8.4067 0.8099 7.5866 18 1 7.4074 1.2116 7.5059 19 6 8.9919 0.6612 8.8261 20 7 10.2086 0.1715 8.9244 21 14 8.0566 1.1552 10.3658 22 1 7.2809 -0.0072 10.8681 23 1 9.0176 1.5966 11.4084 24 1 7.1282 2.2687 10.0451 25 7 7.0356 0.1717 4.9499 26 6 1.6683 2.0159 -1.3112 27 6 1.2218 3.4769 -1.2275 28 6 0.2030 2.3833 -1.5543 29 1 -0.3634 0.6513 0.7949 30 1 -0.3633 0.3627 -0.9615 31 1 -0.3633 -1.0141 0.1666 32 1 1.8981 3.1068 1.1760 33 1 0.3726 2.1951 1.0803 34 1 1.6987 1.6047 2.1104 35 1 5.1350 0.1036 -0.8086 36 1 3.5428 -0.6819 -0.9363 37 1 3.9157 0.7419 -1.9373 38 1 3.2168 0.0677 1.9115 39 1 4.7228 -0.2002 3.6749 40 1 7.6012 1.9060 2.2752 41 1 9.6123 1.9314 3.9607 42 1 9.4075 -0.6497 6.3940 43 1 10.0788 0.9943 6.2736 44 1 10.6201 0.0666 9.7965 45 1 2.2629 1.7198 -2.1754 46 1 1.1721 3.9321 -0.2382 47 1 1.5229 4.1423 -2.0365 48 1 -0.1661 2.3292 -2.5785 49 1 -0.5173 2.1184 -0.7804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416869083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:46 Heat of formation + Delta-G solvation = 27.176238 kcal Electronic energy + Delta-G solvation = -29267.047833 eV Core-core repulsion = 25232.179733 eV Total energy + Delta-G solvation = -4034.868100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23822 -41.47405 -40.43829 -36.88188 -36.61816 -35.94786 -35.26032 -33.04428 -31.79160 -30.89769 -30.62849 -28.49908 -27.90294 -25.28796 -25.10860 -24.03373 -23.31199 -22.48652 -21.73529 -21.33243 -20.30737 -19.22062 -18.67955 -18.26460 -17.57343 -17.34145 -16.75107 -16.62498 -16.39016 -16.24337 -15.93973 -15.59446 -15.47622 -15.23521 -14.59578 -14.45864 -14.28564 -14.16974 -13.78845 -13.74551 -13.58690 -13.17451 -13.11940 -12.95551 -12.90852 -12.73672 -12.65519 -12.28423 -12.15828 -12.04795 -11.93006 -11.74898 -11.60114 -11.37680 -11.17600 -11.06761 -11.01403 -10.71324 -10.32324 -10.17426 -9.70252 -9.03106 -8.31647 -6.45835 1.08734 1.15941 1.38598 1.39487 1.50998 1.73041 2.12052 2.36747 2.43204 2.62943 2.99286 2.99729 3.14616 3.65065 3.69263 3.81986 3.99464 4.05527 4.13783 4.28706 4.30490 4.38752 4.44632 4.54093 4.66687 4.70973 4.77098 4.78870 4.81654 4.89598 4.90894 4.97249 4.98444 4.99774 5.02408 5.05688 5.16970 5.19133 5.24867 5.32170 5.40687 5.54190 5.58233 5.77862 5.90115 5.99975 6.27819 6.31445 6.65164 6.78192 7.16996 7.23923 7.45819 8.75720 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.002117 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.024098 B =13221.618244 C =13821.503466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.385 6.385 3 C 0.148 3.852 4 C -0.186 4.186 5 C 0.183 3.817 6 H 0.089 0.911 7 C -0.156 4.156 8 N -0.715 5.715 9 C 0.714 3.286 10 O -0.598 6.598 11 N -0.638 5.638 12 C 0.286 3.714 13 C -0.292 4.292 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.273 3.727 17 C -0.546 4.546 18 H 0.052 0.948 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.273 1.273 25 N -0.349 5.349 26 C -0.188 4.188 27 C -0.179 4.179 28 C -0.171 4.171 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.419 0.581 40 H 0.167 0.833 41 H 0.201 0.799 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.272 0.728 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.327 3.388 -22.108 31.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.304 6.304 3 C 0.109 3.891 4 C -0.243 4.243 5 C 0.078 3.922 6 H 0.107 0.893 7 C -0.214 4.214 8 N -0.371 5.371 9 C 0.413 3.587 10 O -0.476 6.476 11 N -0.289 5.289 12 C 0.030 3.970 13 C -0.323 4.323 14 C -0.093 4.093 15 N -0.127 5.127 16 C 0.154 3.846 17 C -0.584 4.584 18 H 0.070 0.930 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.197 1.197 25 N -0.180 5.180 26 C -0.207 4.207 27 C -0.215 4.215 28 C -0.207 4.207 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.256 0.744 40 H 0.184 0.816 41 H 0.217 0.783 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.584 3.076 -21.418 30.562 hybrid contribution -0.503 0.117 0.707 0.876 sum -22.087 3.193 -20.710 30.446 Atomic orbital electron populations 1.23248 0.80339 1.03384 1.01560 1.87944 1.20925 1.26524 1.95007 1.20987 0.91099 0.83645 0.93418 1.22564 1.02517 1.01111 0.98077 1.20811 0.92421 0.97961 0.81021 0.89280 1.22090 1.00283 1.00632 0.98395 1.44941 1.14838 1.55703 1.21587 1.15745 0.83199 0.79939 0.79772 1.90831 1.49597 1.43503 1.63695 1.41399 1.14074 1.53990 1.19448 1.19079 0.87747 0.98032 0.92136 1.21684 0.93539 1.12140 1.04946 1.23151 1.01752 0.96892 0.87485 1.48808 1.10436 1.37128 1.16374 1.19329 0.88714 0.96928 0.79641 1.21395 1.01725 1.43918 0.91368 0.92975 1.25755 0.95895 0.94542 1.02138 1.69997 1.14706 1.45039 1.26206 0.85337 0.78302 0.78622 0.78085 1.19801 1.19689 1.19727 1.77242 0.97038 1.26835 1.16860 1.22801 0.99932 0.98957 0.98976 1.23222 1.03478 0.90845 1.03999 1.23239 0.91272 1.02460 1.03747 0.92736 0.92030 0.89278 0.90909 0.90157 0.91807 0.94085 0.91383 0.90216 0.75237 0.74402 0.81551 0.78252 0.96139 0.92356 0.91859 0.86913 0.87927 0.88047 0.87621 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.25 113.37 1.05 1.14 16 2 O -0.38 -5.43 9.09 -148.98 -1.35 -6.79 16 3 C 0.15 2.00 0.47 -10.80 -0.01 2.00 16 4 C -0.19 -2.29 6.60 71.98 0.48 -1.82 16 5 C 0.18 3.38 1.95 44.99 0.09 3.47 16 6 H 0.09 1.93 7.58 -2.39 -0.02 1.91 16 7 C -0.16 -2.91 9.09 71.98 0.65 -2.25 16 8 N -0.71 -14.76 4.31 -457.82 -1.97 -16.74 16 9 C 0.71 21.04 8.50 179.06 1.52 22.56 16 10 O -0.60 -21.48 13.13 -4.03 -0.05 -21.53 16 11 N -0.64 -20.15 5.45 -321.23 -1.75 -21.90 16 12 C 0.29 11.77 8.11 133.31 1.08 12.85 16 13 C -0.29 -11.81 9.61 22.11 0.21 -11.60 16 14 C 0.06 2.26 11.44 83.52 0.96 3.21 16 15 N -0.35 -16.60 3.67 -351.84 -1.29 -17.89 16 16 C 0.27 14.38 6.26 85.63 0.54 14.92 16 17 C -0.55 -31.16 9.24 25.60 0.24 -30.93 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.02 0.95 5.46 84.65 0.46 1.41 16 20 N -0.92 -52.61 13.29 21.45 0.28 -52.33 16 21 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 N -0.35 -16.59 12.42 -54.43 -0.68 -17.27 16 26 C -0.19 -2.13 5.02 -10.79 -0.05 -2.18 16 27 C -0.18 -1.74 9.69 30.60 0.30 -1.44 16 28 C -0.17 -1.38 7.86 30.60 0.24 -1.13 16 29 H 0.05 0.41 5.67 -2.39 -0.01 0.39 16 30 H 0.06 0.47 5.40 -2.39 -0.01 0.45 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.96 6.65 -2.39 -0.02 0.95 16 33 H 0.08 0.74 5.11 -2.39 -0.01 0.73 16 34 H 0.06 0.87 7.11 -2.39 -0.02 0.85 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.26 7.36 -2.39 -0.02 1.24 16 37 H 0.08 1.20 6.68 -2.39 -0.02 1.19 16 38 H 0.41 6.78 7.86 -92.70 -0.73 6.05 16 39 H 0.42 10.78 8.84 -92.70 -0.82 9.96 16 40 H 0.17 6.57 5.91 -2.91 -0.02 6.55 16 41 H 0.20 6.42 8.06 -2.91 -0.02 6.40 16 42 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 44 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.11 1.33 6.57 -2.39 -0.02 1.31 16 46 H 0.10 1.01 5.89 -2.38 -0.01 0.99 16 47 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.11 0.70 5.14 -2.39 -0.01 0.69 16 Total: -1.00 -70.68 385.46 2.42 -68.27 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.54 Total: 29.99 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 7.75 Total: 10.21 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -5.41 Total: -126.12 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.41 Total: -28.32 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.68 2.42 -68.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416869083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.444 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds