Wall clock time and date at job start Tue Mar 31 2020 19:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47033 * 2 1 4 4 N 1.46501 * 109.46904 * 120.00335 * 2 1 3 5 5 C 1.34783 * 119.99791 * 274.99551 * 4 2 1 6 6 O 1.21587 * 119.99813 * 5.04173 * 5 4 2 7 7 N 1.34769 * 119.99766 * 185.04223 * 5 4 2 8 8 C 1.46506 * 119.99904 * 185.06910 * 7 5 4 9 9 C 1.52998 * 109.47136 * 184.22385 * 8 7 5 10 10 C 1.50701 * 115.54745 * 294.91517 * 9 8 7 11 11 H 1.08000 * 119.99907 * 114.89435 * 10 9 8 12 12 C 1.37876 * 120.00461 * 294.61232 * 10 9 8 13 13 N 1.31511 * 120.00183 * 174.41247 * 12 10 9 14 14 Si 1.86802 * 119.99492 * 354.41634 * 12 10 9 15 15 H 1.48492 * 109.47341 * 93.90089 * 14 12 10 16 16 H 1.48502 * 109.46937 * 213.89833 * 14 12 10 17 17 H 1.48502 * 109.47444 * 333.89711 * 14 12 10 18 18 C 1.52994 * 117.50018 * 80.58663 * 9 8 7 19 19 C 1.52999 * 117.49939 * 149.25078 * 9 8 7 20 20 C 1.50697 * 109.46831 * 240.00099 * 2 1 3 21 21 N 1.31128 * 126.55370 * 105.00215 * 20 2 1 22 22 C 1.34498 * 105.61641 * 180.02562 * 21 20 2 23 23 C 1.50704 * 126.28623 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47147 * 59.99455 * 23 22 21 25 25 C 1.52995 * 109.46852 * 179.97438 * 23 22 21 26 26 C 1.53003 * 109.47028 * 299.99809 * 23 22 21 27 27 N 1.29945 * 107.42464 * 359.97438 * 22 21 20 28 28 O 1.21299 * 110.25098 * 359.70468 * 27 22 21 29 29 H 1.09003 * 109.46900 * 299.99797 * 1 2 3 30 30 H 1.09000 * 109.47126 * 59.99834 * 1 2 3 31 31 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00469 * 95.00211 * 4 2 1 33 33 H 0.97003 * 120.00371 * 5.07211 * 7 5 4 34 34 H 1.08999 * 109.46955 * 64.22503 * 8 7 5 35 35 H 1.08999 * 109.47127 * 304.22410 * 8 7 5 36 36 H 0.97005 * 120.00134 * 179.97438 * 13 12 10 37 37 H 1.09005 * 117.49797 * 214.99799 * 18 9 8 38 38 H 1.09003 * 117.50285 * 0.02562 * 18 9 8 39 39 H 1.08998 * 117.49932 * 359.97128 * 19 9 8 40 40 H 1.09000 * 117.50220 * 144.97204 * 19 9 8 41 41 H 1.09010 * 109.47056 * 60.00366 * 24 23 22 42 42 H 1.09000 * 109.47317 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47593 * 300.00180 * 24 23 22 44 44 H 1.09002 * 109.47529 * 59.99744 * 25 23 22 45 45 H 1.09000 * 109.46938 * 180.02562 * 25 23 22 46 46 H 1.08995 * 109.47248 * 299.99588 * 25 23 22 47 47 H 1.09002 * 109.47075 * 60.00210 * 26 23 22 48 48 H 1.08996 * 109.47231 * 180.02562 * 26 23 22 49 49 H 1.09002 * 109.46816 * 299.99926 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.7724 1.1357 2.4361 7 7 2.6911 -0.6252 3.4305 8 6 2.7301 0.0663 4.7215 9 6 3.4869 -0.7919 5.7371 10 6 2.8361 -2.1038 6.0925 11 1 3.3191 -3.0341 5.8324 12 6 1.6269 -2.1166 6.7548 13 7 1.0057 -3.2560 6.9677 14 14 0.8711 -0.5153 7.3497 15 1 -0.0723 -0.0021 6.3242 16 1 0.1394 -0.7550 8.6196 17 1 1.9452 0.4843 7.5785 18 6 5.0158 -0.7494 5.6980 19 6 4.2597 -0.0651 6.8396 20 6 2.0323 -0.7104 -1.2305 21 7 2.5496 -0.1520 -2.2982 22 6 2.8505 -1.1669 -3.1279 23 6 3.4712 -1.0464 -4.4959 24 6 4.8371 -0.3672 -4.3782 25 6 3.6459 -2.4407 -5.1011 26 6 2.5612 -0.2091 -5.3969 27 7 2.5076 -2.2703 -2.5333 28 8 2.0412 -2.0304 -1.4396 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6318 1.1526 33 1 3.0570 -1.5198 3.3483 34 1 1.7126 0.2345 5.0744 35 1 3.2373 1.0241 4.6055 36 1 0.1552 -3.2650 7.4341 37 1 5.5509 -1.6704 5.9294 38 1 5.4825 -0.1097 4.9490 39 1 4.2293 1.0244 6.8412 40 1 4.2971 -0.5357 7.8221 41 1 5.4854 -0.9638 -3.7362 42 1 5.2862 -0.2805 -5.3675 43 1 4.7130 0.6261 -3.9468 44 1 2.6730 -2.9250 -5.1849 45 1 4.0952 -2.3537 -6.0903 46 1 4.2943 -3.0368 -4.4591 47 1 2.4372 0.7842 -4.9655 48 1 3.0099 -0.1224 -6.3864 49 1 1.5881 -0.6930 -5.4807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430860869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:31 Heat of formation + Delta-G solvation = 52.581149 kcal Electronic energy + Delta-G solvation = -29314.879018 eV Core-core repulsion = 25281.112557 eV Total energy + Delta-G solvation = -4033.766461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.84480 -39.81904 -38.05135 -37.33227 -36.10929 -34.84202 -33.51617 -32.20376 -32.05275 -30.24973 -27.75871 -27.70598 -26.73548 -25.31152 -24.81720 -24.58476 -22.30974 -21.65726 -20.59533 -19.75704 -19.33974 -18.31047 -18.25106 -17.54400 -16.65794 -15.90353 -15.54929 -15.35198 -15.16774 -14.77369 -14.59455 -14.35333 -14.31442 -13.90401 -13.46711 -13.19312 -12.89783 -12.88276 -12.81989 -12.64494 -12.41457 -12.33329 -12.10218 -12.09883 -11.95910 -11.87555 -11.70865 -11.51058 -11.28802 -11.08611 -11.06951 -10.74380 -10.61494 -10.28399 -10.21198 -9.95492 -9.53586 -9.25668 -9.16791 -8.81327 -8.53690 -8.26636 -6.19318 -4.22502 0.85958 1.94904 2.47706 2.73175 3.27304 3.32565 3.38134 3.43837 3.52178 3.73748 4.33300 4.37241 4.45916 4.48441 4.57964 4.78031 4.86574 4.95065 5.04432 5.17546 5.19834 5.21160 5.27954 5.35800 5.43291 5.44874 5.45843 5.55545 5.62608 5.65862 5.68116 5.82429 5.84633 5.90168 5.95620 6.04710 6.11098 6.22474 6.37831 6.41691 6.46192 6.69533 6.91405 7.03331 7.08730 7.25550 7.65145 7.92117 8.37807 8.40373 8.81784 8.91619 9.44108 10.91533 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.002427 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.089445 B =11533.699425 C =11755.338780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.265 3.735 3 H 0.131 0.869 4 N -0.750 5.750 5 C 0.707 3.293 6 O -0.598 6.598 7 N -0.714 5.714 8 C 0.172 3.828 9 C -0.019 4.019 10 C -0.490 4.490 11 H 0.078 0.922 12 C 0.083 3.917 13 N -0.892 5.892 14 Si 0.866 3.134 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.248 1.248 18 C -0.180 4.180 19 C -0.184 4.184 20 C 0.178 3.822 21 N -0.467 5.467 22 C 0.179 3.821 23 C 0.024 3.976 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.138 4.138 27 N -0.377 5.377 28 O 0.082 5.918 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.402 0.598 33 H 0.404 0.596 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 4.766 -22.331 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.157 3.843 3 H 0.149 0.851 4 N -0.409 5.409 5 C 0.407 3.593 6 O -0.477 6.477 7 N -0.366 5.366 8 C 0.048 3.952 9 C -0.020 4.020 10 C -0.527 4.527 11 H 0.096 0.904 12 C -0.121 4.121 13 N -0.529 5.529 14 Si 0.694 3.306 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.172 1.172 18 C -0.217 4.217 19 C -0.222 4.222 20 C -0.044 4.044 21 N -0.200 5.200 22 C -0.094 4.094 23 C 0.022 3.978 24 C -0.197 4.197 25 C -0.198 4.198 26 C -0.196 4.196 27 N -0.083 5.083 28 O 0.023 5.977 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.237 0.763 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.307 5.271 -22.739 23.575 hybrid contribution -0.381 -0.210 0.574 0.720 sum 2.926 5.061 -22.165 22.923 Atomic orbital electron populations 1.22284 0.92171 1.03688 1.04226 1.19067 0.94882 0.95383 0.75007 0.85124 1.45072 1.73337 1.13938 1.08535 1.15839 0.78894 0.84634 0.79941 1.90892 1.56635 1.16331 1.83814 1.44994 1.62518 1.20682 1.08421 1.20980 0.99985 0.93328 0.80868 1.19617 0.90012 0.96958 0.95397 1.20225 1.04772 0.89735 1.38003 0.90450 1.24919 0.96315 0.96032 0.94785 1.69892 1.16102 1.25727 1.41141 0.87025 0.80177 0.85137 0.78286 1.20352 1.21877 1.17175 1.22800 0.95839 1.01787 1.01314 1.23033 1.06929 0.97245 0.94988 1.28995 0.95842 0.81450 0.98075 1.71815 1.15884 1.30609 1.01688 1.25815 1.00278 0.83519 0.99790 1.19009 0.95556 0.97984 0.85214 1.21869 0.93995 1.01193 1.02639 1.21841 1.02824 0.94183 1.00927 1.21863 0.98778 1.00111 0.98872 1.74648 1.15625 1.23839 0.94210 1.85310 1.58503 1.26732 1.27132 0.89215 0.91024 0.91380 0.76292 0.76072 0.92632 0.93191 0.92458 0.89659 0.90887 0.91045 0.89277 0.92388 0.91119 0.91290 0.91953 0.91202 0.91894 0.91292 0.91133 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.47 37.16 0.35 -1.40 16 2 C 0.26 3.14 3.08 -69.08 -0.21 2.93 16 3 H 0.13 1.65 7.65 -51.93 -0.40 1.25 16 4 N -0.75 -9.99 5.07 -59.81 -0.30 -10.30 16 5 C 0.71 12.31 8.51 -86.92 -0.74 11.57 16 6 O -0.60 -12.16 16.00 5.29 0.08 -12.08 16 7 N -0.71 -13.03 5.48 -65.22 -0.36 -13.39 16 8 C 0.17 3.57 5.15 -4.04 -0.02 3.54 16 9 C -0.02 -0.40 0.84 -155.66 -0.13 -0.53 16 10 C -0.49 -12.54 9.15 -34.44 -0.32 -12.85 16 11 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 13 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 14 Si 0.87 20.80 24.96 -169.99 -4.24 16.55 16 15 H -0.28 -6.77 7.04 56.52 0.40 -6.37 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.25 -5.59 5.72 56.52 0.32 -5.27 16 18 C -0.18 -3.38 9.96 -26.69 -0.27 -3.64 16 19 C -0.18 -3.66 8.03 -26.69 -0.21 -3.87 16 20 C 0.18 2.11 7.26 -13.06 -0.09 2.02 16 21 N -0.47 -5.74 11.55 -9.87 -0.11 -5.85 16 22 C 0.18 2.09 6.40 -156.37 -1.00 1.08 16 23 C 0.02 0.21 0.99 -155.66 -0.15 0.06 16 24 C -0.14 -1.07 8.45 37.16 0.31 -0.75 16 25 C -0.14 -1.07 7.97 37.15 0.30 -0.77 16 26 C -0.14 -1.00 8.46 37.16 0.31 -0.69 16 27 N -0.38 -4.78 11.47 30.90 0.35 -4.43 16 28 O 0.08 1.01 11.12 18.08 0.20 1.21 16 29 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 4.68 8.47 -40.82 -0.35 4.34 16 33 H 0.40 6.90 8.36 -40.82 -0.34 6.56 16 34 H 0.06 1.27 5.06 -51.93 -0.26 1.01 16 35 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -30.78 402.91 -7.67 -38.45 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.17 Total: 9.98 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.97 Total: -1.16 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.35 Total: -59.03 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.29 Total: -10.87 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.24 Total: 16.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.78 -7.67 -38.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430860869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.035 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds