Wall clock time and date at job start Tue Mar 31 2020 19:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47033 * 2 1 4 4 N 1.46501 * 109.46904 * 120.00335 * 2 1 3 5 5 C 1.34783 * 119.99791 * 274.99551 * 4 2 1 6 6 O 1.21587 * 119.99813 * 5.04173 * 5 4 2 7 7 N 1.34769 * 119.99766 * 185.04223 * 5 4 2 8 8 C 1.46506 * 119.99904 * 185.06910 * 7 5 4 9 9 C 1.52998 * 109.47136 * 184.22385 * 8 7 5 10 10 C 1.50701 * 115.54745 * 294.91517 * 9 8 7 11 11 H 1.08000 * 119.99907 * 114.89435 * 10 9 8 12 12 C 1.37876 * 120.00461 * 294.61232 * 10 9 8 13 13 N 1.31511 * 120.00183 * 174.41247 * 12 10 9 14 14 Si 1.86802 * 119.99492 * 354.41634 * 12 10 9 15 15 H 1.48492 * 109.47341 * 93.90089 * 14 12 10 16 16 H 1.48502 * 109.46937 * 213.89833 * 14 12 10 17 17 H 1.48502 * 109.47444 * 333.89711 * 14 12 10 18 18 C 1.52994 * 117.50018 * 80.58663 * 9 8 7 19 19 C 1.52999 * 117.49939 * 149.25078 * 9 8 7 20 20 C 1.50697 * 109.46831 * 240.00099 * 2 1 3 21 21 N 1.31128 * 126.55370 * 105.00215 * 20 2 1 22 22 C 1.34498 * 105.61641 * 180.02562 * 21 20 2 23 23 C 1.50704 * 126.28623 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47147 * 59.99455 * 23 22 21 25 25 C 1.52995 * 109.46852 * 179.97438 * 23 22 21 26 26 C 1.53003 * 109.47028 * 299.99809 * 23 22 21 27 27 N 1.29945 * 107.42464 * 359.97438 * 22 21 20 28 28 O 1.21299 * 110.25098 * 359.70468 * 27 22 21 29 29 H 1.09003 * 109.46900 * 299.99797 * 1 2 3 30 30 H 1.09000 * 109.47126 * 59.99834 * 1 2 3 31 31 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00469 * 95.00211 * 4 2 1 33 33 H 0.97003 * 120.00371 * 5.07211 * 7 5 4 34 34 H 1.08999 * 109.46955 * 64.22503 * 8 7 5 35 35 H 1.08999 * 109.47127 * 304.22410 * 8 7 5 36 36 H 0.97005 * 120.00134 * 179.97438 * 13 12 10 37 37 H 1.09005 * 117.49797 * 214.99799 * 18 9 8 38 38 H 1.09003 * 117.50285 * 0.02562 * 18 9 8 39 39 H 1.08998 * 117.49932 * 359.97128 * 19 9 8 40 40 H 1.09000 * 117.50220 * 144.97204 * 19 9 8 41 41 H 1.09010 * 109.47056 * 60.00366 * 24 23 22 42 42 H 1.09000 * 109.47317 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47593 * 300.00180 * 24 23 22 44 44 H 1.09002 * 109.47529 * 59.99744 * 25 23 22 45 45 H 1.09000 * 109.46938 * 180.02562 * 25 23 22 46 46 H 1.08995 * 109.47248 * 299.99588 * 25 23 22 47 47 H 1.09002 * 109.47075 * 60.00210 * 26 23 22 48 48 H 1.08996 * 109.47231 * 180.02562 * 26 23 22 49 49 H 1.09002 * 109.46816 * 299.99926 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.7724 1.1357 2.4361 7 7 2.6911 -0.6252 3.4305 8 6 2.7301 0.0663 4.7215 9 6 3.4869 -0.7919 5.7371 10 6 2.8361 -2.1038 6.0925 11 1 3.3191 -3.0341 5.8324 12 6 1.6269 -2.1166 6.7548 13 7 1.0057 -3.2560 6.9677 14 14 0.8711 -0.5153 7.3497 15 1 -0.0723 -0.0021 6.3242 16 1 0.1394 -0.7550 8.6196 17 1 1.9452 0.4843 7.5785 18 6 5.0158 -0.7494 5.6980 19 6 4.2597 -0.0651 6.8396 20 6 2.0323 -0.7104 -1.2305 21 7 2.5496 -0.1520 -2.2982 22 6 2.8505 -1.1669 -3.1279 23 6 3.4712 -1.0464 -4.4959 24 6 4.8371 -0.3672 -4.3782 25 6 3.6459 -2.4407 -5.1011 26 6 2.5612 -0.2091 -5.3969 27 7 2.5076 -2.2703 -2.5333 28 8 2.0412 -2.0304 -1.4396 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6318 1.1526 33 1 3.0570 -1.5198 3.3483 34 1 1.7126 0.2345 5.0744 35 1 3.2373 1.0241 4.6055 36 1 0.1552 -3.2650 7.4341 37 1 5.5509 -1.6704 5.9294 38 1 5.4825 -0.1097 4.9490 39 1 4.2293 1.0244 6.8412 40 1 4.2971 -0.5357 7.8221 41 1 5.4854 -0.9638 -3.7362 42 1 5.2862 -0.2805 -5.3675 43 1 4.7130 0.6261 -3.9468 44 1 2.6730 -2.9250 -5.1849 45 1 4.0952 -2.3537 -6.0903 46 1 4.2943 -3.0368 -4.4591 47 1 2.4372 0.7842 -4.9655 48 1 3.0099 -0.1224 -6.3864 49 1 1.5881 -0.6930 -5.4807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430860869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:30 Heat of formation + Delta-G solvation = 30.455898 kcal Electronic energy + Delta-G solvation = -29315.838441 eV Core-core repulsion = 25281.112557 eV Total energy + Delta-G solvation = -4034.725884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.78840 -41.19049 -38.90907 -38.76910 -37.28563 -35.77647 -35.01907 -34.24328 -33.08700 -31.29558 -28.41859 -28.36465 -28.27888 -26.98872 -25.71785 -25.68900 -23.36046 -23.11396 -21.88824 -21.09902 -20.60372 -19.59177 -19.26463 -18.70838 -18.19233 -17.24635 -17.00747 -16.44754 -16.34782 -16.12998 -15.75882 -15.33594 -15.22779 -14.96687 -14.92259 -14.75108 -14.49532 -14.07125 -13.76908 -13.72943 -13.51149 -13.26225 -13.14260 -12.97494 -12.75645 -12.71163 -12.65952 -12.60115 -12.54057 -12.31456 -12.16226 -12.05144 -12.00736 -11.82983 -11.53068 -11.35656 -11.10519 -10.95074 -10.68582 -10.48581 -10.34976 -9.75949 -8.28321 -6.32509 -0.09757 1.02295 1.35629 1.42227 1.49251 1.52025 1.57413 2.11949 2.38008 2.45692 2.84332 2.98814 3.22471 3.47340 3.55441 3.84238 3.87814 3.91107 4.03102 4.05321 4.10673 4.35094 4.48497 4.49737 4.56983 4.59268 4.63057 4.66737 4.70948 4.73462 4.76688 4.83171 4.87964 4.88124 4.94696 4.99225 5.11329 5.13918 5.17364 5.25064 5.26627 5.29424 5.30877 5.52703 5.60378 5.71711 5.93438 6.32301 6.74289 6.97316 7.05942 7.36461 7.52210 8.85852 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.002427 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.089445 B =11533.699425 C =11755.338780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.269 3.731 3 H 0.127 0.873 4 N -0.737 5.737 5 C 0.709 3.291 6 O -0.626 6.626 7 N -0.716 5.716 8 C 0.180 3.820 9 C -0.042 4.042 10 C -0.475 4.475 11 H 0.044 0.956 12 C 0.033 3.967 13 N -0.941 5.941 14 Si 0.917 3.083 15 H -0.285 1.285 16 H -0.299 1.299 17 H -0.222 1.222 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.182 3.818 21 N -0.476 5.476 22 C 0.178 3.822 23 C 0.018 3.982 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.134 4.134 27 N -0.394 5.394 28 O 0.076 5.924 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.409 0.591 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 6.346 -24.118 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.161 3.839 3 H 0.144 0.856 4 N -0.395 5.395 5 C 0.409 3.591 6 O -0.507 6.507 7 N -0.369 5.369 8 C 0.055 3.945 9 C -0.044 4.044 10 C -0.513 4.513 11 H 0.062 0.938 12 C -0.166 4.166 13 N -0.580 5.580 14 Si 0.743 3.257 15 H -0.212 1.212 16 H -0.226 1.226 17 H -0.144 1.144 18 C -0.193 4.193 19 C -0.219 4.219 20 C -0.039 4.039 21 N -0.210 5.210 22 C -0.095 4.095 23 C 0.016 3.984 24 C -0.193 4.193 25 C -0.193 4.193 26 C -0.192 4.192 27 N -0.101 5.101 28 O 0.019 5.981 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.244 0.756 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.114 0.886 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.544 6.839 -24.545 25.882 hybrid contribution -0.685 -0.757 1.035 1.454 sum 3.859 6.082 -23.510 24.588 Atomic orbital electron populations 1.22234 0.91049 1.04147 1.04372 1.19099 0.95626 0.94876 0.74280 0.85568 1.44929 1.72399 1.14256 1.07916 1.15871 0.78488 0.84291 0.80478 1.90871 1.57752 1.17654 1.84430 1.44917 1.62970 1.20855 1.08146 1.20761 0.98498 0.93827 0.81381 1.19461 0.91859 0.95759 0.97272 1.20360 1.04130 0.90610 1.36183 0.93793 1.25589 0.97177 0.98349 0.95488 1.70017 1.16861 1.27816 1.43331 0.86225 0.79848 0.82580 0.77059 1.21205 1.22596 1.14391 1.22835 0.93576 1.01904 1.00977 1.23086 1.05836 0.98492 0.94443 1.28893 0.95688 0.81401 0.97954 1.71835 1.16145 1.31003 1.01981 1.26471 0.99426 0.82931 1.00681 1.19292 0.96115 0.99012 0.83936 1.21859 0.93324 1.00199 1.03930 1.21826 1.02335 0.93213 1.01974 1.21850 0.98446 0.99138 0.99738 1.74650 1.16537 1.24473 0.94485 1.85295 1.58741 1.26795 1.27264 0.90793 0.89089 0.90778 0.75207 0.75565 0.95026 0.91892 0.92723 0.89808 0.88253 0.88749 0.90060 0.93352 0.88497 0.92238 0.92763 0.88602 0.93028 0.92114 0.88589 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.47 71.98 0.68 -2.56 16 2 C 0.27 6.15 3.08 44.25 0.14 6.28 16 3 H 0.13 3.09 7.65 -2.39 -0.02 3.07 16 4 N -0.74 -19.06 5.07 -461.41 -2.34 -21.41 16 5 C 0.71 24.08 8.51 179.05 1.52 25.61 16 6 O -0.63 -24.96 16.00 -3.99 -0.06 -25.02 16 7 N -0.72 -25.47 5.48 -478.53 -2.62 -28.09 16 8 C 0.18 7.16 5.15 86.38 0.44 7.61 16 9 C -0.04 -1.75 0.84 -52.93 -0.04 -1.79 16 10 C -0.48 -24.45 9.15 25.60 0.23 -24.22 16 11 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 12 C 0.03 1.79 5.47 84.65 0.46 2.25 16 13 N -0.94 -56.05 13.96 21.45 0.30 -55.75 16 14 Si 0.92 43.03 24.96 68.60 1.71 44.74 16 15 H -0.29 -13.68 7.04 99.48 0.70 -12.98 16 16 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 17 H -0.22 -9.32 5.72 99.48 0.57 -8.75 16 18 C -0.16 -5.40 9.96 30.62 0.30 -5.10 16 19 C -0.18 -6.66 8.03 30.62 0.25 -6.42 16 20 C 0.18 4.18 7.26 88.38 0.64 4.82 16 21 N -0.48 -11.29 11.55 -303.19 -3.50 -14.79 16 22 C 0.18 3.98 6.40 138.46 0.89 4.87 16 23 C 0.02 0.29 0.99 -52.93 -0.05 0.23 16 24 C -0.14 -1.83 8.45 71.98 0.61 -1.22 16 25 C -0.14 -1.83 7.97 71.98 0.57 -1.26 16 26 C -0.13 -1.67 8.46 71.98 0.61 -1.06 16 27 N -0.39 -9.76 11.47 -60.31 -0.69 -10.45 16 28 O 0.08 1.82 11.12 74.77 0.83 2.65 16 29 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.41 9.27 8.47 -92.71 -0.79 8.49 16 33 H 0.41 13.69 8.36 -92.71 -0.78 12.92 16 34 H 0.03 1.41 5.06 -2.39 -0.01 1.40 16 35 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 36 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 37 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 38 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.09 3.08 8.14 -2.39 -0.02 3.07 16 40 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -66.88 402.91 0.14 -66.74 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.74 Total: 33.34 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 7.26 Total: 8.05 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -8.86 Total: -130.49 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.77 Total: -22.37 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.71 Total: 44.74 kcal Total: -66.88 0.14 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430860869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.192 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds