Wall clock time and date at job start Tue Mar 31 2020 20:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46945 * 2 1 4 4 C 1.52997 * 109.47183 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47517 * 64.99974 * 4 2 1 6 6 H 1.09001 * 109.47112 * 304.99846 * 5 4 2 7 7 C 1.53001 * 109.47185 * 64.99925 * 5 4 2 8 8 N 1.46506 * 109.47286 * 185.00246 * 5 4 2 9 9 N 1.40074 * 126.09388 * 299.99886 * 8 5 4 10 10 C 1.30852 * 108.41833 * 180.02562 * 9 8 5 11 11 C 1.39694 * 108.46046 * 359.77381 * 10 9 8 12 12 C 1.35850 * 126.09698 * 120.00297 * 8 5 4 13 13 N 1.39195 * 126.27556 * 359.95539 * 12 8 5 14 14 C 1.34777 * 120.00310 * 180.02562 * 13 12 8 15 15 O 1.21391 * 119.99729 * 359.73067 * 14 13 12 16 16 C 1.49306 * 120.00415 * 180.02562 * 14 13 12 17 17 O 1.21363 * 119.99472 * 359.72850 * 16 14 13 18 18 N 1.34777 * 120.00073 * 179.72999 * 16 14 13 19 19 C 1.46496 * 119.99614 * 180.02562 * 18 16 14 20 20 H 1.09001 * 109.47676 * 324.99283 * 19 18 16 21 21 C 1.52998 * 109.47575 * 84.99689 * 19 18 16 22 22 C 1.50706 * 109.46843 * 204.99675 * 19 18 16 23 23 H 1.07995 * 119.99761 * 359.97438 * 22 19 18 24 24 C 1.37879 * 119.99904 * 180.02562 * 22 19 18 25 25 N 1.31507 * 119.99748 * 179.97438 * 24 22 19 26 26 Si 1.86798 * 119.99997 * 359.97438 * 24 22 19 27 27 H 1.48495 * 109.47254 * 90.00465 * 26 24 22 28 28 H 1.48498 * 109.47085 * 210.00250 * 26 24 22 29 29 H 1.48498 * 109.47143 * 329.99958 * 26 24 22 30 30 H 1.09008 * 109.46838 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46981 * 299.99767 * 1 2 3 32 32 H 1.08997 * 109.47344 * 60.00261 * 1 2 3 33 33 H 1.08996 * 109.47042 * 239.99750 * 2 1 3 34 34 H 1.08999 * 109.47175 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46988 * 299.99834 * 3 2 1 36 36 H 1.08996 * 109.47455 * 60.00003 * 3 2 1 37 37 H 1.09003 * 109.47201 * 304.99770 * 4 2 1 38 38 H 1.08998 * 109.47128 * 185.00157 * 4 2 1 39 39 H 1.09001 * 109.46895 * 60.00432 * 7 5 4 40 40 H 1.09001 * 109.47221 * 180.02562 * 7 5 4 41 41 H 1.08998 * 109.46974 * 300.00288 * 7 5 4 42 42 H 1.08005 * 125.76940 * 180.02562 * 10 9 8 43 43 H 1.07994 * 126.07236 * 180.24074 * 11 10 9 44 44 H 0.97004 * 120.00043 * 0.02562 * 13 12 8 45 45 H 0.96996 * 119.99887 * 359.97438 * 18 16 14 46 46 H 1.08997 * 109.47198 * 59.99601 * 21 19 18 47 47 H 1.09002 * 109.47400 * 179.97438 * 21 19 18 48 48 H 1.09001 * 109.47056 * 300.00185 * 21 19 18 49 49 H 0.97003 * 120.00179 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 1 0.5563 -2.2707 1.0528 7 6 2.3449 -2.8708 0.0127 8 7 2.0184 -2.8594 2.4365 9 7 3.3179 -2.9691 2.9477 10 6 3.2636 -3.6273 4.0773 11 6 1.9307 -3.9578 4.3330 12 6 1.1767 -3.4783 3.3048 13 7 -0.2037 -3.5963 3.1711 14 6 -0.9196 -4.2400 4.1143 15 8 -0.3599 -4.7212 5.0780 16 6 -2.4003 -4.3671 3.9705 17 8 -2.9598 -3.8864 3.0068 18 7 -3.1155 -5.0155 4.9110 19 6 -4.5682 -5.1406 4.7696 20 1 -4.9669 -4.2396 4.3034 21 6 -4.8931 -6.3536 3.8956 22 6 -5.1917 -5.3202 6.1299 23 1 -4.5680 -5.3397 7.0114 24 6 -6.5581 -5.4607 6.2488 25 7 -7.1021 -5.6180 7.4358 26 14 -7.6367 -5.4278 4.7241 27 1 -7.7906 -6.8074 4.1967 28 1 -8.9718 -4.8799 5.0739 29 1 -7.0052 -4.5698 3.6895 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.6054 -0.2618 2.1370 38 1 3.1263 -0.6443 1.2951 39 1 3.4239 -2.7956 0.1479 40 1 2.0562 -3.9209 -0.0312 41 1 2.0598 -2.3768 -0.9162 42 1 4.1064 -3.8701 4.7077 43 1 1.5634 -4.4990 5.1924 44 1 -0.6506 -3.2152 2.3990 45 1 -2.6682 -5.4000 5.6811 46 1 -4.4945 -7.2546 4.3618 47 1 -5.9741 -6.4469 3.7908 48 1 -4.4422 -6.2237 2.9118 49 1 -8.0634 -5.7165 7.5196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438869381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:44 Heat of formation + Delta-G solvation = 5.584690 kcal Electronic energy + Delta-G solvation = -29394.234254 eV Core-core repulsion = 25358.429874 eV Total energy + Delta-G solvation = -4035.804380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74063 -40.26497 -38.40757 -37.86525 -35.72065 -34.85996 -33.94083 -32.50129 -30.23458 -30.00752 -29.10660 -27.56785 -27.16270 -25.48392 -25.02235 -23.52278 -22.14483 -21.01611 -20.29155 -19.88368 -19.70635 -18.76474 -17.67958 -16.77008 -16.20918 -16.12070 -15.93194 -15.47243 -15.15046 -15.12451 -14.68206 -14.49185 -14.08147 -13.87290 -13.65985 -13.53859 -13.42190 -13.13076 -13.02334 -12.75204 -12.60499 -12.33497 -12.33064 -12.01064 -11.95270 -11.78644 -11.54589 -11.42198 -11.26322 -11.17031 -11.07904 -10.92781 -10.89977 -10.56845 -10.30189 -9.79921 -9.38370 -9.34519 -9.09922 -8.89433 -8.48277 -8.22478 -6.28894 -4.33420 1.20304 1.80381 2.02425 2.63549 2.84075 3.16195 3.28759 3.30303 3.43079 3.72732 4.01977 4.22583 4.34264 4.44649 4.55837 4.66946 4.73699 4.81688 4.86324 5.04526 5.10251 5.18014 5.26428 5.27181 5.37567 5.41550 5.47050 5.49594 5.57145 5.62454 5.73356 5.78487 5.80922 5.91766 5.99326 6.02669 6.14968 6.19191 6.37559 6.62495 6.65219 6.73901 6.82669 7.00356 7.03755 7.31285 7.54068 7.65970 7.91090 8.30158 8.38240 8.70869 9.28962 10.82989 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.002632 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.428010 B =10635.778510 C =11865.639475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.120 4.120 5 C 0.157 3.843 6 H 0.095 0.905 7 C -0.161 4.161 8 N -0.382 5.382 9 N -0.287 5.287 10 C 0.057 3.943 11 C -0.277 4.277 12 C 0.304 3.696 13 N -0.629 5.629 14 C 0.516 3.484 15 O -0.483 6.483 16 C 0.503 3.497 17 O -0.535 6.535 18 N -0.657 5.657 19 C 0.235 3.765 20 H 0.055 0.945 21 C -0.164 4.164 22 C -0.541 4.541 23 H 0.084 0.916 24 C 0.081 3.919 25 N -0.887 5.887 26 Si 0.885 3.115 27 H -0.275 1.275 28 H -0.292 1.292 29 H -0.262 1.262 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.185 0.815 43 H 0.174 0.826 44 H 0.420 0.580 45 H 0.410 0.590 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.037 0.963 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.929 8.402 -14.833 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.159 4.159 5 C 0.055 3.945 6 H 0.113 0.887 7 C -0.219 4.219 8 N -0.171 5.171 9 N -0.108 5.108 10 C -0.129 4.129 11 C -0.309 4.309 12 C 0.085 3.915 13 N -0.278 5.278 14 C 0.297 3.703 15 O -0.353 6.353 16 C 0.281 3.719 17 O -0.414 6.414 18 N -0.306 5.306 19 C 0.133 3.867 20 H 0.073 0.927 21 C -0.222 4.222 22 C -0.578 4.578 23 H 0.102 0.898 24 C -0.124 4.124 25 N -0.523 5.523 26 Si 0.714 3.286 27 H -0.201 1.201 28 H -0.220 1.220 29 H -0.186 1.186 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.202 0.798 43 H 0.191 0.809 44 H 0.258 0.742 45 H 0.246 0.754 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.346 8.974 -15.604 26.425 hybrid contribution -1.280 -0.457 -0.145 1.367 sum 18.066 8.517 -15.749 25.435 Atomic orbital electron populations 1.21972 0.94893 1.02013 1.02434 1.21180 0.96112 0.96555 0.97701 1.21816 1.01020 0.95544 1.02002 1.21982 1.02687 0.92394 0.98788 1.21369 0.99497 0.92728 0.80862 0.88746 1.22172 1.02172 1.00840 0.96701 1.48998 1.03965 1.45582 1.18529 1.77351 0.96358 1.23850 1.13290 1.23747 0.97672 0.96924 0.94574 1.21711 0.92031 1.14095 1.03033 1.18142 0.81919 0.98409 0.93029 1.42520 1.03464 1.55553 1.26256 1.20729 0.89194 0.78221 0.82117 1.90707 1.71409 1.43838 1.29372 1.19469 0.85992 0.81548 0.84903 1.90737 1.71214 1.48541 1.30913 1.46134 1.10043 1.51533 1.22855 1.19345 0.74633 0.95324 0.97436 0.92734 1.22478 1.00545 1.00496 0.98662 1.20983 0.93086 1.52731 0.91047 0.89781 1.24814 0.97592 0.93802 0.96158 1.69855 1.12000 1.47873 1.22591 0.86887 0.79687 0.78656 0.83345 1.20146 1.21973 1.18646 0.92528 0.92284 0.92226 0.90536 0.92579 0.92450 0.92566 0.91269 0.90215 0.90831 0.92073 0.90418 0.79773 0.80925 0.74249 0.75387 0.92349 0.92943 0.94358 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.96 37.16 0.33 -0.70 16 2 C -0.10 -0.61 2.78 -90.62 -0.25 -0.86 16 3 C -0.15 -0.88 9.19 37.15 0.34 -0.54 16 4 C -0.12 -0.96 4.41 -26.73 -0.12 -1.08 16 5 C 0.16 1.39 3.03 -67.93 -0.21 1.18 16 6 H 0.09 0.76 5.04 -51.93 -0.26 0.50 16 7 C -0.16 -1.23 9.22 37.16 0.34 -0.89 16 8 N -0.38 -4.48 3.30 -53.80 -0.18 -4.65 16 9 N -0.29 -3.56 12.42 30.59 0.38 -3.18 16 10 C 0.06 0.67 12.00 -17.43 -0.21 0.46 16 11 C -0.28 -3.77 9.65 -39.76 -0.38 -4.15 16 12 C 0.30 4.05 7.68 -152.86 -1.17 2.88 16 13 N -0.63 -8.26 5.40 -11.80 -0.06 -8.33 16 14 C 0.52 8.03 7.85 -11.65 -0.09 7.93 16 15 O -0.48 -8.06 13.60 5.46 0.07 -7.99 16 16 C 0.50 8.98 7.85 -11.65 -0.09 8.89 16 17 O -0.54 -10.35 16.14 5.49 0.09 -10.27 16 18 N -0.66 -12.75 5.06 -55.41 -0.28 -13.03 16 19 C 0.24 5.32 2.15 -69.08 -0.15 5.17 16 20 H 0.05 1.32 6.64 -51.93 -0.34 0.98 16 21 C -0.16 -3.44 8.96 37.16 0.33 -3.11 16 22 C -0.54 -14.15 9.31 -34.44 -0.32 -14.47 16 23 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 24 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 25 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 26 Si 0.88 20.76 24.37 -169.99 -4.14 16.61 16 27 H -0.27 -6.23 6.87 56.52 0.39 -5.85 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 30 H 0.06 0.37 6.46 -51.92 -0.34 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.43 6.34 -51.93 -0.33 0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.44 6.46 -51.93 -0.34 0.10 16 42 H 0.19 1.52 8.06 -52.48 -0.42 1.09 16 43 H 0.17 2.51 5.83 -52.49 -0.31 2.21 16 44 H 0.42 4.78 7.02 -40.82 -0.29 4.50 16 45 H 0.41 7.53 8.01 -40.82 -0.33 7.20 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -30.34 392.23 -6.55 -36.89 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.37 Total: 10.08 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.74 Total: 2.81 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.63 Total: -54.05 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.16 Total: -18.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.14 Total: 16.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.34 -6.55 -36.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438869381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.473 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds