Wall clock time and date at job start Tue Mar 31 2020 20:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.52999 * 109.46587 * 120.00337 * 2 1 3 5 5 C 1.53000 * 109.46796 * 174.05792 * 4 2 1 6 6 H 1.09005 * 109.47334 * 54.84650 * 5 4 2 7 7 C 1.53005 * 109.47260 * 174.84184 * 5 4 2 8 8 N 1.46495 * 109.47157 * 294.84238 * 5 4 2 9 9 N 1.40078 * 126.09750 * 299.97249 * 8 5 4 10 10 C 1.30851 * 108.42305 * 180.02562 * 9 8 5 11 11 C 1.39693 * 108.45753 * 359.74151 * 10 9 8 12 12 C 1.35854 * 126.10049 * 120.00491 * 8 5 4 13 13 N 1.39197 * 126.26901 * 359.97284 * 12 8 5 14 14 C 1.34784 * 119.99781 * 180.02562 * 13 12 8 15 15 O 1.21389 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.49304 * 119.99718 * 180.02562 * 14 13 12 17 17 O 1.21365 * 120.00450 * 359.97438 * 16 14 13 18 18 N 1.34784 * 119.99718 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99675 * 179.97438 * 18 16 14 20 20 H 1.08999 * 109.47478 * 35.00079 * 19 18 16 21 21 C 1.53001 * 109.47081 * 274.99508 * 19 18 16 22 22 C 1.50697 * 109.46953 * 154.99819 * 19 18 16 23 23 H 1.08007 * 120.00270 * 5.14359 * 22 19 18 24 24 C 1.37881 * 120.00284 * 185.13507 * 22 19 18 25 25 N 1.31511 * 120.00327 * 185.13875 * 24 22 19 26 26 Si 1.86803 * 119.99725 * 5.42214 * 24 22 19 27 27 H 1.48495 * 109.47036 * 269.72392 * 26 24 22 28 28 H 1.48499 * 109.46871 * 29.71947 * 26 24 22 29 29 H 1.48499 * 109.47258 * 149.71991 * 26 24 22 30 30 H 1.09002 * 109.47083 * 300.00120 * 1 2 3 31 31 H 1.09000 * 109.46831 * 59.99486 * 1 2 3 32 32 H 1.08999 * 109.47419 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46781 * 239.99692 * 2 1 3 34 34 H 1.09001 * 109.46960 * 65.23004 * 3 2 1 35 35 H 1.08998 * 109.46819 * 185.22354 * 3 2 1 36 36 H 1.09000 * 109.47513 * 305.22399 * 3 2 1 37 37 H 1.08999 * 109.47365 * 54.06179 * 4 2 1 38 38 H 1.09002 * 109.47477 * 294.05521 * 4 2 1 39 39 H 1.08995 * 109.47197 * 184.95957 * 7 5 4 40 40 H 1.09003 * 109.46821 * 304.95494 * 7 5 4 41 41 H 1.09001 * 109.47229 * 64.95635 * 7 5 4 42 42 H 1.07993 * 125.77291 * 180.02562 * 10 9 8 43 43 H 1.08001 * 126.07218 * 180.27268 * 11 10 9 44 44 H 0.96996 * 120.00407 * 0.02562 * 13 12 8 45 45 H 0.96998 * 119.99978 * 359.97438 * 18 16 14 46 46 H 1.08996 * 109.47288 * 294.94652 * 21 19 18 47 47 H 1.09000 * 109.46756 * 54.94841 * 21 19 18 48 48 H 1.08996 * 109.47087 * 174.94630 * 21 19 18 49 49 H 0.97003 * 119.99580 * 355.27643 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5626 -0.8520 1.1768 6 1 4.0053 0.1333 1.0301 7 6 4.0853 -1.4567 2.4816 8 7 3.9253 -1.7222 0.0556 9 7 3.5435 -3.0600 -0.1079 10 6 4.0584 -3.5033 -1.2262 11 6 4.7818 -2.4671 -1.8213 12 6 4.6924 -1.3760 -1.0108 13 7 5.2752 -0.1322 -1.2368 14 6 6.0159 0.0738 -2.3439 15 8 6.1743 -0.8252 -3.1441 16 6 6.6414 1.4077 -2.5860 17 8 6.4827 2.3066 -1.7862 18 7 7.3825 1.6135 -3.6928 19 6 7.9958 2.9225 -3.9306 20 1 8.2995 3.3597 -2.9795 21 6 6.9836 3.8432 -4.6152 22 6 9.2040 2.7577 -4.8162 23 1 9.4390 1.7901 -5.2345 24 6 10.0093 3.8422 -5.0926 25 7 11.0039 3.7225 -5.9447 26 14 9.6924 5.4795 -4.2509 27 1 8.7566 6.2864 -5.0744 28 1 9.0943 5.2405 -2.9129 29 1 10.9744 6.2129 -4.0962 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.7552 1.9285 0.9331 35 1 3.1260 1.4438 -0.0936 36 1 1.6024 1.9827 -0.8395 37 1 1.5924 -1.7137 1.3039 38 1 1.7661 -0.1498 2.1361 39 1 5.1750 -1.4684 2.4656 40 1 3.7407 -0.8565 3.3238 41 1 3.7124 -2.4757 2.5848 42 1 3.9399 -4.5002 -1.6242 43 1 5.3190 -2.5221 -2.7567 44 1 5.1483 0.5862 -0.5976 45 1 7.5097 0.8950 -4.3319 46 1 6.7479 3.4521 -5.6048 47 1 6.0736 3.8910 -4.0171 48 1 7.4082 4.8425 -4.7111 49 1 11.2138 2.8558 -6.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438869383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:53 Heat of formation + Delta-G solvation = -2.853904 kcal Electronic energy + Delta-G solvation = -29902.068242 eV Core-core repulsion = 25865.897937 eV Total energy + Delta-G solvation = -4036.170305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78189 -40.27317 -38.39392 -37.61769 -35.70630 -34.84060 -34.04974 -32.55092 -30.18860 -30.03913 -29.10587 -27.53661 -27.07244 -25.37352 -24.73529 -23.30818 -22.01226 -20.89999 -20.32314 -20.01507 -19.75631 -18.71398 -17.88103 -17.08874 -16.47703 -16.23461 -15.71041 -15.37742 -15.13149 -15.08793 -14.49868 -14.25654 -14.15122 -13.89018 -13.61650 -13.38553 -13.27894 -13.06443 -12.87439 -12.66427 -12.57398 -12.36712 -12.33645 -12.13572 -11.92436 -11.87394 -11.60636 -11.47977 -11.22922 -11.05270 -11.00013 -10.93128 -10.66755 -10.56504 -10.19572 -9.88494 -9.41452 -9.09231 -9.00970 -8.68200 -8.50145 -8.22717 -6.65257 -4.34385 1.19831 1.80623 2.02501 2.64056 2.83656 3.28163 3.37239 3.42699 3.50239 3.72190 4.00968 4.32592 4.39787 4.43571 4.62658 4.71436 4.74507 4.83858 4.92626 5.11928 5.15202 5.20245 5.25717 5.31868 5.36837 5.41126 5.48023 5.54073 5.55264 5.66208 5.74670 5.79474 5.86705 5.96942 6.01793 6.04482 6.19020 6.25393 6.42581 6.63092 6.67205 6.73741 6.85024 7.02540 7.09809 7.39270 7.58992 7.66160 8.05933 8.17655 8.35025 8.67970 9.37074 10.76103 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.002780 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.011311 B =10069.016460 C =10848.431191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.121 4.121 5 C 0.156 3.844 6 H 0.094 0.906 7 C -0.161 4.161 8 N -0.377 5.377 9 N -0.285 5.285 10 C 0.056 3.944 11 C -0.278 4.278 12 C 0.305 3.695 13 N -0.628 5.628 14 C 0.515 3.485 15 O -0.484 6.484 16 C 0.501 3.499 17 O -0.535 6.535 18 N -0.657 5.657 19 C 0.234 3.766 20 H 0.054 0.946 21 C -0.161 4.161 22 C -0.614 4.614 23 H 0.066 0.934 24 C 0.038 3.962 25 N -0.900 5.900 26 Si 1.051 2.949 27 H -0.280 1.280 28 H -0.274 1.274 29 H -0.286 1.286 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.185 0.815 43 H 0.172 0.828 44 H 0.419 0.581 45 H 0.408 0.592 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.055 0.945 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.724 -9.169 14.618 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.159 4.159 5 C 0.054 3.946 6 H 0.112 0.888 7 C -0.219 4.219 8 N -0.166 5.166 9 N -0.107 5.107 10 C -0.130 4.130 11 C -0.310 4.310 12 C 0.086 3.914 13 N -0.278 5.278 14 C 0.297 3.703 15 O -0.355 6.355 16 C 0.279 3.721 17 O -0.414 6.414 18 N -0.306 5.306 19 C 0.131 3.869 20 H 0.072 0.928 21 C -0.219 4.219 22 C -0.652 4.652 23 H 0.084 0.916 24 C -0.169 4.169 25 N -0.533 5.533 26 Si 0.879 3.121 27 H -0.207 1.207 28 H -0.200 1.200 29 H -0.212 1.212 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.201 0.799 43 H 0.190 0.810 44 H 0.257 0.743 45 H 0.243 0.757 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.863 -7.715 15.703 25.728 hybrid contribution 0.039 -1.404 -0.823 1.628 sum -18.824 -9.119 14.880 25.670 Atomic orbital electron populations 1.21787 0.94752 1.01733 1.01795 1.21131 0.96241 0.96201 0.98306 1.21926 1.00670 0.95885 1.02312 1.22036 0.92866 1.02305 0.98726 1.21390 0.96926 0.91581 0.84659 0.88808 1.22134 1.01787 1.02689 0.95295 1.48935 1.40680 1.09814 1.17198 1.77339 1.23879 0.89253 1.20257 1.23723 0.96458 1.00087 0.92710 1.21692 1.12698 0.91331 1.05258 1.18120 0.95141 0.87264 0.90874 1.42549 1.49210 1.11241 1.24773 1.20766 0.78804 0.90081 0.80656 1.90701 1.57123 1.43802 1.43864 1.19509 0.81725 0.86730 0.84144 1.90734 1.61104 1.43846 1.45713 1.46233 1.46463 1.17127 1.20771 1.19464 0.91486 0.78363 0.97581 0.92790 1.22421 0.98622 1.00136 1.00714 1.22143 1.10274 0.99000 1.33816 0.91588 1.25717 0.93199 1.03171 0.94802 1.70819 1.29179 1.27352 1.25974 0.83925 0.76111 0.75313 0.76740 1.20662 1.19985 1.21239 0.92639 0.92614 0.92696 0.91239 0.92254 0.93209 0.92207 0.90094 0.90060 0.91993 0.90599 0.90761 0.79859 0.81049 0.74309 0.75681 0.92651 0.94636 0.92624 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.10 -0.86 2.86 -90.62 -0.26 -1.12 16 3 C -0.15 -1.25 8.84 37.16 0.33 -0.92 16 4 C -0.12 -0.93 4.28 -26.73 -0.11 -1.04 16 5 C 0.16 1.36 2.97 -67.93 -0.20 1.16 16 6 H 0.09 0.75 5.19 -51.93 -0.27 0.49 16 7 C -0.16 -1.23 9.45 37.16 0.35 -0.88 16 8 N -0.38 -4.30 2.67 -53.80 -0.14 -4.44 16 9 N -0.29 -3.47 12.42 30.59 0.38 -3.09 16 10 C 0.06 0.65 12.00 -17.43 -0.21 0.44 16 11 C -0.28 -3.77 9.65 -39.77 -0.38 -4.15 16 12 C 0.31 4.02 7.68 -152.86 -1.17 2.85 16 13 N -0.63 -8.30 5.40 -11.80 -0.06 -8.37 16 14 C 0.52 8.13 7.85 -11.65 -0.09 8.04 16 15 O -0.48 -8.20 13.60 5.46 0.07 -8.13 16 16 C 0.50 9.10 7.85 -11.65 -0.09 9.01 16 17 O -0.54 -10.46 16.14 5.48 0.09 -10.37 16 18 N -0.66 -13.04 5.06 -55.41 -0.28 -13.32 16 19 C 0.23 5.34 2.14 -69.08 -0.15 5.19 16 20 H 0.05 1.32 6.09 -51.93 -0.32 1.00 16 21 C -0.16 -3.38 9.07 37.16 0.34 -3.04 16 22 C -0.61 -16.15 9.10 -34.44 -0.31 -16.47 16 23 H 0.07 1.83 7.95 -52.48 -0.42 1.41 16 24 C 0.04 1.03 5.43 -17.82 -0.10 0.93 16 25 N -0.90 -26.38 13.70 55.43 0.76 -25.62 16 26 Si 1.05 24.30 25.28 -169.99 -4.30 20.00 16 27 H -0.28 -6.11 6.81 56.52 0.39 -5.72 16 28 H -0.27 -6.03 6.36 56.52 0.36 -5.67 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.77 7.60 -51.93 -0.39 0.38 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.44 6.19 -51.93 -0.32 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.17 2.51 5.83 -52.49 -0.31 2.21 16 44 H 0.42 4.88 6.47 -40.82 -0.26 4.62 16 45 H 0.41 7.71 7.99 -40.82 -0.33 7.38 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 1.17 4.39 -51.93 -0.23 0.95 16 49 H 0.27 7.87 8.72 -40.82 -0.36 7.51 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -30.18 395.08 -6.80 -36.99 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -7.55 Total: 11.14 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.72 Total: -0.74 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.65 Total: -54.84 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.16 Total: -18.50 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.30 Total: 20.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.18 -6.80 -36.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438869383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.135 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds