Wall clock time and date at job start Tue Mar 31 2020 20:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.52999 * 109.46587 * 120.00337 * 2 1 3 5 5 C 1.53000 * 109.46796 * 174.05792 * 4 2 1 6 6 H 1.09005 * 109.47334 * 54.84650 * 5 4 2 7 7 C 1.53005 * 109.47260 * 174.84184 * 5 4 2 8 8 N 1.46495 * 109.47157 * 294.84238 * 5 4 2 9 9 N 1.40078 * 126.09750 * 299.97249 * 8 5 4 10 10 C 1.30851 * 108.42305 * 180.02562 * 9 8 5 11 11 C 1.39693 * 108.45753 * 359.74151 * 10 9 8 12 12 C 1.35854 * 126.10049 * 120.00491 * 8 5 4 13 13 N 1.39197 * 126.26901 * 359.97284 * 12 8 5 14 14 C 1.34784 * 119.99781 * 180.02562 * 13 12 8 15 15 O 1.21389 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.49304 * 119.99718 * 180.02562 * 14 13 12 17 17 O 1.21365 * 120.00450 * 359.97438 * 16 14 13 18 18 N 1.34784 * 119.99718 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99675 * 179.97438 * 18 16 14 20 20 H 1.08999 * 109.47478 * 35.00079 * 19 18 16 21 21 C 1.53001 * 109.47081 * 274.99508 * 19 18 16 22 22 C 1.50697 * 109.46953 * 154.99819 * 19 18 16 23 23 H 1.08007 * 120.00270 * 5.14359 * 22 19 18 24 24 C 1.37881 * 120.00284 * 185.13507 * 22 19 18 25 25 N 1.31511 * 120.00327 * 185.13875 * 24 22 19 26 26 Si 1.86803 * 119.99725 * 5.42214 * 24 22 19 27 27 H 1.48495 * 109.47036 * 269.72392 * 26 24 22 28 28 H 1.48499 * 109.46871 * 29.71947 * 26 24 22 29 29 H 1.48499 * 109.47258 * 149.71991 * 26 24 22 30 30 H 1.09002 * 109.47083 * 300.00120 * 1 2 3 31 31 H 1.09000 * 109.46831 * 59.99486 * 1 2 3 32 32 H 1.08999 * 109.47419 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46781 * 239.99692 * 2 1 3 34 34 H 1.09001 * 109.46960 * 65.23004 * 3 2 1 35 35 H 1.08998 * 109.46819 * 185.22354 * 3 2 1 36 36 H 1.09000 * 109.47513 * 305.22399 * 3 2 1 37 37 H 1.08999 * 109.47365 * 54.06179 * 4 2 1 38 38 H 1.09002 * 109.47477 * 294.05521 * 4 2 1 39 39 H 1.08995 * 109.47197 * 184.95957 * 7 5 4 40 40 H 1.09003 * 109.46821 * 304.95494 * 7 5 4 41 41 H 1.09001 * 109.47229 * 64.95635 * 7 5 4 42 42 H 1.07993 * 125.77291 * 180.02562 * 10 9 8 43 43 H 1.08001 * 126.07218 * 180.27268 * 11 10 9 44 44 H 0.96996 * 120.00407 * 0.02562 * 13 12 8 45 45 H 0.96998 * 119.99978 * 359.97438 * 18 16 14 46 46 H 1.08996 * 109.47288 * 294.94652 * 21 19 18 47 47 H 1.09000 * 109.46756 * 54.94841 * 21 19 18 48 48 H 1.08996 * 109.47087 * 174.94630 * 21 19 18 49 49 H 0.97003 * 119.99580 * 355.27643 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5626 -0.8520 1.1768 6 1 4.0053 0.1333 1.0301 7 6 4.0853 -1.4567 2.4816 8 7 3.9253 -1.7222 0.0556 9 7 3.5435 -3.0600 -0.1079 10 6 4.0584 -3.5033 -1.2262 11 6 4.7818 -2.4671 -1.8213 12 6 4.6924 -1.3760 -1.0108 13 7 5.2752 -0.1322 -1.2368 14 6 6.0159 0.0738 -2.3439 15 8 6.1743 -0.8252 -3.1441 16 6 6.6414 1.4077 -2.5860 17 8 6.4827 2.3066 -1.7862 18 7 7.3825 1.6135 -3.6928 19 6 7.9958 2.9225 -3.9306 20 1 8.2995 3.3597 -2.9795 21 6 6.9836 3.8432 -4.6152 22 6 9.2040 2.7577 -4.8162 23 1 9.4390 1.7901 -5.2345 24 6 10.0093 3.8422 -5.0926 25 7 11.0039 3.7225 -5.9447 26 14 9.6924 5.4795 -4.2509 27 1 8.7566 6.2864 -5.0744 28 1 9.0943 5.2405 -2.9129 29 1 10.9744 6.2129 -4.0962 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.7552 1.9285 0.9331 35 1 3.1260 1.4438 -0.0936 36 1 1.6024 1.9827 -0.8395 37 1 1.5924 -1.7137 1.3039 38 1 1.7661 -0.1498 2.1361 39 1 5.1750 -1.4684 2.4656 40 1 3.7407 -0.8565 3.3238 41 1 3.7124 -2.4757 2.5848 42 1 3.9399 -4.5002 -1.6242 43 1 5.3190 -2.5221 -2.7567 44 1 5.1483 0.5862 -0.5976 45 1 7.5097 0.8950 -4.3319 46 1 6.7479 3.4521 -5.6048 47 1 6.0736 3.8910 -4.0171 48 1 7.4082 4.8425 -4.7111 49 1 11.2138 2.8558 -6.3264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438869383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:52 Heat of formation + Delta-G solvation = -22.170099 kcal Electronic energy + Delta-G solvation = -29902.905855 eV Core-core repulsion = 25865.897937 eV Total energy + Delta-G solvation = -4037.007918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.82207 -41.57009 -39.80943 -38.32447 -37.26761 -36.20192 -34.78021 -34.49372 -31.82454 -31.02245 -30.14411 -28.15361 -27.68134 -27.02762 -26.39376 -24.11108 -23.37135 -22.00401 -21.53294 -21.18588 -20.95422 -20.04223 -19.28311 -18.49028 -17.90579 -17.38839 -16.89091 -16.61627 -16.15356 -16.03546 -15.70321 -15.36833 -15.11182 -15.05942 -15.02351 -14.70229 -14.51130 -14.31911 -14.15581 -13.75788 -13.62168 -13.43100 -13.35748 -13.14230 -13.06657 -12.83480 -12.74359 -12.52379 -12.46884 -12.32974 -11.98836 -11.81517 -11.68266 -11.66602 -11.58727 -11.44311 -10.99929 -10.85170 -10.72441 -10.21410 -9.98508 -9.28007 -8.82346 -6.51871 -0.08035 0.68214 0.93831 1.44504 1.54277 1.61373 1.70190 1.80432 2.07790 2.41586 2.44522 3.02391 3.24045 3.29909 3.74297 3.77067 3.93527 4.02687 4.14229 4.17144 4.30381 4.38371 4.41103 4.58977 4.63490 4.65630 4.68805 4.71193 4.72659 4.76204 4.78715 4.90880 4.94026 4.94718 4.97763 5.06407 5.19203 5.24365 5.25826 5.35055 5.37627 5.38149 5.49583 5.65306 5.76691 5.88238 5.95882 6.31017 6.43443 6.54552 6.69257 6.85981 7.27767 8.58308 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.002780 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.011311 B =10069.016460 C =10848.431191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.114 4.114 5 C 0.145 3.855 6 H 0.102 0.898 7 C -0.156 4.156 8 N -0.368 5.368 9 N -0.292 5.292 10 C 0.057 3.943 11 C -0.295 4.295 12 C 0.291 3.709 13 N -0.612 5.612 14 C 0.524 3.476 15 O -0.498 6.498 16 C 0.507 3.493 17 O -0.545 6.545 18 N -0.665 5.665 19 C 0.237 3.763 20 H 0.044 0.956 21 C -0.156 4.156 22 C -0.611 4.611 23 H 0.038 0.962 24 C -0.010 4.010 25 N -0.933 5.933 26 Si 1.083 2.917 27 H -0.255 1.255 28 H -0.256 1.256 29 H -0.289 1.289 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.214 0.786 43 H 0.159 0.841 44 H 0.427 0.573 45 H 0.411 0.589 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 -8.583 16.902 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.151 4.151 5 C 0.045 3.955 6 H 0.120 0.880 7 C -0.214 4.214 8 N -0.157 5.157 9 N -0.114 5.114 10 C -0.128 4.128 11 C -0.327 4.327 12 C 0.071 3.929 13 N -0.262 5.262 14 C 0.305 3.695 15 O -0.370 6.370 16 C 0.286 3.714 17 O -0.424 6.424 18 N -0.314 5.314 19 C 0.134 3.866 20 H 0.062 0.938 21 C -0.214 4.214 22 C -0.650 4.650 23 H 0.057 0.943 24 C -0.210 4.210 25 N -0.568 5.568 26 Si 0.905 3.095 27 H -0.180 1.180 28 H -0.180 1.180 29 H -0.215 1.215 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.230 0.770 43 H 0.176 0.824 44 H 0.267 0.733 45 H 0.247 0.753 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.084 -7.154 18.025 28.646 hybrid contribution 0.664 -1.712 -1.482 2.360 sum -20.420 -8.866 16.542 27.735 Atomic orbital electron populations 1.21763 0.93949 1.01739 1.02360 1.21074 0.96899 0.96154 0.97495 1.21929 1.00137 0.95683 1.02992 1.22003 0.91756 1.02107 0.99272 1.21753 0.97911 0.91583 0.84299 0.88007 1.22114 1.01160 1.02609 0.95485 1.49166 1.39683 1.09766 1.17134 1.77316 1.23945 0.89642 1.20495 1.24157 0.95510 1.00954 0.92185 1.21732 1.13345 0.92384 1.05194 1.18134 0.95947 0.86948 0.91827 1.42267 1.48219 1.11718 1.23956 1.20139 0.79226 0.88817 0.81337 1.90719 1.57878 1.43786 1.44598 1.19719 0.80987 0.87530 0.83139 1.90722 1.61295 1.44559 1.45791 1.46052 1.47229 1.16361 1.21762 1.19197 0.91053 0.80061 0.96318 0.93784 1.22321 0.98697 0.99518 1.00875 1.22319 1.11489 0.97701 1.33449 0.94339 1.27017 0.92610 1.06695 0.94637 1.70934 1.31074 1.26668 1.28130 0.83543 0.76629 0.72181 0.77142 1.18047 1.18005 1.21531 0.91093 0.93036 0.92979 0.94217 0.90421 0.93875 0.92961 0.90979 0.87414 0.92864 0.87888 0.91659 0.76982 0.82406 0.73329 0.75344 0.92515 0.92730 0.92470 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.10 -1.51 2.86 -10.79 -0.03 -1.54 16 3 C -0.15 -2.19 8.84 71.98 0.64 -1.56 16 4 C -0.11 -1.47 4.28 30.59 0.13 -1.33 16 5 C 0.15 2.23 2.97 44.99 0.13 2.36 16 6 H 0.10 1.40 5.19 -2.38 -0.01 1.39 16 7 C -0.16 -2.00 9.45 71.98 0.68 -1.32 16 8 N -0.37 -7.95 2.67 -324.13 -0.86 -8.81 16 9 N -0.29 -6.73 12.42 -57.14 -0.71 -7.44 16 10 C 0.06 1.27 12.00 85.19 1.02 2.29 16 11 C -0.29 -7.87 9.65 22.15 0.21 -7.65 16 12 C 0.29 7.45 7.68 131.25 1.01 8.46 16 13 N -0.61 -15.61 5.40 -309.57 -1.67 -17.28 16 14 C 0.52 16.21 7.85 87.22 0.68 16.90 16 15 O -0.50 -16.85 13.60 -3.37 -0.05 -16.89 16 16 C 0.51 17.95 7.85 87.22 0.68 18.64 16 17 O -0.54 -20.41 16.14 -3.29 -0.05 -20.46 16 18 N -0.66 -26.12 5.06 -447.57 -2.27 -28.39 16 19 C 0.24 10.66 2.14 44.24 0.09 10.76 16 20 H 0.04 2.09 6.09 -2.39 -0.01 2.08 16 21 C -0.16 -6.26 9.07 71.98 0.65 -5.61 16 22 C -0.61 -32.54 9.10 25.60 0.23 -32.31 16 23 H 0.04 2.21 7.95 -2.91 -0.02 2.19 16 24 C -0.01 -0.54 5.43 84.66 0.46 -0.08 16 25 N -0.93 -55.87 13.70 21.45 0.29 -55.58 16 26 Si 1.08 47.86 25.28 68.60 1.73 49.60 16 27 H -0.26 -10.25 6.81 99.48 0.68 -9.58 16 28 H -0.26 -10.45 6.36 99.48 0.63 -9.82 16 29 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 0.85 7.60 -2.39 -0.02 0.84 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.67 6.19 -2.39 -0.01 0.66 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.21 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.16 4.67 5.83 -2.91 -0.02 4.65 16 44 H 0.43 9.34 6.47 -92.71 -0.60 8.74 16 45 H 0.41 15.67 7.99 -92.71 -0.74 14.93 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.06 2.27 4.39 -2.39 -0.01 2.26 16 49 H 0.26 15.55 8.72 -92.71 -0.81 14.74 16 Total: -1.00 -65.33 395.08 3.19 -62.14 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.50 Total: 36.33 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 7.27 Total: 6.78 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -5.22 Total: -117.50 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.10 Total: -37.35 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.73 Total: 49.60 kcal Total: -65.33 3.19 -62.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438869383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.975 kcal (2) G-P(sol) polarization free energy of solvation -65.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds