Wall clock time and date at job start Tue Mar 31 2020 19:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46900 * 2 1 4 4 N 1.46500 * 109.46991 * 119.99376 * 2 1 3 5 5 C 1.34947 * 126.04040 * 275.00665 * 4 2 1 6 6 C 1.35311 * 107.75028 * 180.02562 * 5 4 2 7 7 C 1.50694 * 126.04430 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46941 * 19.99871 * 7 6 5 9 9 C 1.52998 * 109.47322 * 259.99831 * 7 6 5 10 10 N 1.46498 * 109.47279 * 139.99573 * 7 6 5 11 11 C 1.34782 * 119.99923 * 204.99920 * 10 7 6 12 12 O 1.21585 * 120.00207 * 0.02562 * 11 10 7 13 13 N 1.34779 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.47424 * 125.64887 * 0.03054 * 13 11 10 15 15 C 1.54907 * 104.83121 * 204.09033 * 14 13 11 16 16 C 1.55157 * 101.58053 * 322.98869 * 15 14 13 17 17 O 1.42900 * 110.72282 * 277.13604 * 16 15 14 18 18 C 1.50711 * 110.72005 * 154.04648 * 16 15 14 19 19 H 1.07998 * 119.99870 * 359.97438 * 18 16 15 20 20 C 1.37877 * 119.99816 * 180.02562 * 18 16 15 21 21 N 1.31516 * 120.00112 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99728 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46726 * 59.99921 * 22 20 18 24 24 H 1.48496 * 109.46792 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46954 * 300.00234 * 22 20 18 26 26 C 1.47017 * 125.64722 * 179.71858 * 13 11 10 27 27 C 1.39876 * 107.91749 * 359.97438 * 6 5 4 28 28 N 1.30834 * 108.20073 * 0.27043 * 27 6 5 29 29 H 1.08997 * 109.47918 * 300.00592 * 1 2 3 30 30 H 1.09000 * 109.47307 * 60.00808 * 1 2 3 31 31 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47338 * 239.99749 * 2 1 3 33 33 H 1.09008 * 109.46742 * 299.99888 * 3 2 1 34 34 H 1.08997 * 109.47319 * 59.99040 * 3 2 1 35 35 H 1.08994 * 109.47228 * 179.97438 * 3 2 1 36 36 H 1.08009 * 126.12504 * 0.02894 * 5 4 2 37 37 H 1.09001 * 109.47145 * 299.99915 * 9 7 6 38 38 H 1.09002 * 109.47044 * 59.99519 * 9 7 6 39 39 H 1.08998 * 109.47263 * 179.97438 * 9 7 6 40 40 H 0.96996 * 120.00391 * 25.00481 * 10 7 6 41 41 H 1.09003 * 110.36816 * 322.92286 * 14 13 11 42 42 H 1.09003 * 110.36784 * 85.25273 * 14 13 11 43 43 H 1.08999 * 111.01153 * 81.06197 * 15 14 13 44 44 H 1.09008 * 111.00532 * 204.87699 * 15 14 13 45 45 H 0.96694 * 114.00440 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99920 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.88660 * 298.39530 * 26 13 11 48 48 H 1.09001 * 109.88662 * 59.56106 * 26 13 11 49 49 H 1.08002 * 125.89548 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1932 -0.1391 2.4155 6 6 2.6569 -1.1047 3.2422 7 6 2.9934 -0.9363 4.7014 8 1 2.4920 -0.0497 5.0899 9 6 4.5067 -0.7774 4.8609 10 7 2.5451 -2.1161 5.4453 11 6 2.2662 -2.0178 6.7603 12 8 2.3862 -0.9499 7.3291 13 7 1.8533 -3.1031 7.4445 14 6 1.6651 -4.4529 6.8824 15 6 0.6437 -5.1363 7.8255 16 6 1.0736 -4.5774 9.2076 17 8 2.1637 -5.3317 9.7412 18 6 -0.0893 -4.5736 10.1663 19 1 -1.0560 -4.9311 9.8439 20 6 0.0809 -4.1127 11.4546 21 7 1.2581 -3.6768 11.8469 22 14 -1.3606 -4.1073 12.6426 23 1 -1.8603 -5.4943 12.8208 24 1 -0.9192 -3.5684 13.9540 25 1 -2.4481 -3.2556 12.0975 26 6 1.5223 -3.1384 8.8765 27 6 2.7687 -2.2869 2.5031 28 7 2.3914 -2.0384 1.2752 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.9979 0.8888 2.6834 37 1 5.0080 -1.6640 4.4724 38 1 4.8402 0.1004 4.3073 39 1 4.7500 -0.6552 5.9163 40 1 2.4491 -2.9680 4.9916 41 1 1.2642 -4.3900 5.8707 42 1 2.6081 -4.9996 6.8844 43 1 -0.3752 -4.8352 7.5821 44 1 0.7467 -6.2210 7.7928 45 1 2.4707 -5.0226 10.6044 46 1 1.3779 -3.3529 12.7534 47 1 2.4006 -2.8769 9.4667 48 1 0.7110 -2.4415 9.0868 49 1 3.1122 -3.2391 2.8796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591956896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:42 Heat of formation + Delta-G solvation = -24.371758 kcal Electronic energy + Delta-G solvation = -29573.177308 eV Core-core repulsion = 25536.073919 eV Total energy + Delta-G solvation = -4037.103389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36735 -41.17921 -39.20696 -37.18460 -36.07061 -35.96255 -34.14844 -32.63130 -31.35249 -31.02792 -29.65590 -29.39298 -28.20290 -26.95520 -24.91935 -23.98360 -23.48615 -21.53532 -21.28162 -21.05853 -20.44285 -19.30476 -18.93211 -17.86787 -17.24412 -16.76475 -16.65549 -16.29056 -16.15833 -15.80962 -15.56148 -15.18131 -14.96590 -14.76819 -14.66780 -14.53820 -14.19425 -13.82888 -13.69238 -13.51572 -13.46759 -13.28335 -13.15684 -13.07756 -12.85242 -12.81982 -12.54384 -12.48436 -12.32254 -12.31622 -12.27139 -12.06493 -12.02144 -11.44153 -11.25702 -11.16519 -10.61909 -10.38452 -10.28542 -10.20774 -9.42970 -9.33280 -8.25110 -6.40944 0.91278 1.43398 1.44274 1.51793 1.52961 1.64008 1.91951 2.22023 2.39123 3.01146 3.13597 3.47038 3.83602 3.86695 3.91665 3.96865 4.10468 4.11271 4.19046 4.23411 4.33327 4.40379 4.45920 4.56452 4.62097 4.63973 4.74471 4.76718 4.80205 4.81263 4.90252 4.99592 5.05656 5.07310 5.15686 5.18443 5.22233 5.28733 5.32434 5.40110 5.51343 5.63724 5.67443 5.77782 6.04195 6.12479 6.22931 6.65428 6.72964 7.11778 7.30969 7.40838 7.63193 8.80975 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.002355 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.057654 B =11888.658810 C =12072.763493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.160 4.160 4 N -0.364 5.364 5 C 0.077 3.923 6 C -0.255 4.255 7 C 0.245 3.755 8 H 0.072 0.928 9 C -0.148 4.148 10 N -0.722 5.722 11 C 0.713 3.287 12 O -0.641 6.641 13 N -0.636 5.636 14 C 0.108 3.892 15 C -0.111 4.111 16 C 0.234 3.766 17 O -0.590 6.590 18 C -0.557 4.557 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.139 3.861 27 C 0.053 3.947 28 N -0.324 5.324 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.197 0.803 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.405 0.595 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.378 0.622 46 H 0.271 0.729 47 H 0.025 0.975 48 H 0.029 0.971 49 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 7.327 -25.279 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 C -0.218 4.218 4 N -0.147 5.147 5 C -0.071 4.071 6 C -0.268 4.268 7 C 0.140 3.860 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.378 5.378 11 C 0.415 3.585 12 O -0.524 6.524 13 N -0.372 5.372 14 C -0.014 4.014 15 C -0.149 4.149 16 C 0.193 3.807 17 O -0.399 6.399 18 C -0.596 4.596 19 H 0.086 0.914 20 C -0.176 4.176 21 N -0.557 5.557 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.199 1.199 26 C 0.015 3.985 27 C -0.133 4.133 28 N -0.145 5.145 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.213 0.787 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.241 0.759 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.229 0.771 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.048 0.952 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.542 7.492 -26.664 27.740 hybrid contribution -0.363 0.370 2.468 2.522 sum 1.179 7.862 -24.196 25.468 Atomic orbital electron populations 1.22220 0.92962 1.02492 1.04198 1.21585 0.95298 0.93767 0.84683 1.22205 1.01991 0.92504 1.05095 1.49098 1.49524 1.06885 1.09154 1.22532 0.98752 1.00579 0.85256 1.19950 1.15889 0.94894 0.96029 1.18766 0.94570 0.87373 0.85340 0.91016 1.22095 0.94736 1.02970 1.00876 1.45067 1.72401 1.13986 1.06344 1.15697 0.77988 0.82639 0.82181 1.90835 1.62804 1.28712 1.70032 1.47861 1.69417 1.09109 1.10844 1.22374 0.99502 0.81667 0.97809 1.22723 0.98457 1.00897 0.92829 1.19699 0.84653 0.84900 0.91402 1.86054 1.53195 1.60377 1.40237 1.21828 0.96996 1.43586 0.97151 0.91429 1.25833 0.98635 0.93195 0.99944 1.69680 1.23979 1.42519 1.19486 0.85512 0.79228 0.78685 0.77641 1.19215 1.20904 1.19876 1.22364 0.96971 1.00852 0.78294 1.23919 0.99169 0.99797 0.90417 1.77306 1.21658 0.94706 1.20787 0.92106 0.88031 0.93432 0.87918 0.87787 0.90933 0.91940 0.78667 0.91657 0.90127 0.94615 0.75890 0.88378 0.91043 0.90002 0.89177 0.77121 0.91948 0.95601 0.95228 0.78861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.52 71.98 0.69 -0.88 16 2 C 0.15 1.61 3.93 44.99 0.18 1.79 16 3 C -0.16 -0.96 8.83 71.98 0.64 -0.32 16 4 N -0.36 -6.42 3.53 -327.49 -1.15 -7.57 16 5 C 0.08 1.34 10.50 83.54 0.88 2.22 16 6 C -0.26 -5.30 5.09 -20.15 -0.10 -5.41 16 7 C 0.25 6.21 3.00 44.24 0.13 6.34 16 8 H 0.07 2.08 7.57 -2.39 -0.02 2.07 16 9 C -0.15 -3.50 9.47 71.98 0.68 -2.82 16 10 N -0.72 -21.08 5.02 -461.42 -2.32 -23.39 16 11 C 0.71 29.02 8.45 179.05 1.51 30.53 16 12 O -0.64 -31.64 16.33 -3.98 -0.07 -31.71 16 13 N -0.64 -26.56 3.33 -829.74 -2.76 -29.32 16 14 C 0.11 3.59 6.56 86.85 0.57 4.16 16 15 C -0.11 -4.28 6.23 31.99 0.20 -4.08 16 16 C 0.23 11.51 0.86 -10.35 -0.01 11.50 16 17 O -0.59 -30.44 13.07 -148.98 -1.95 -32.39 16 18 C -0.56 -29.57 8.12 25.60 0.21 -29.37 16 19 H 0.07 3.47 7.76 -2.91 -0.02 3.45 16 20 C 0.02 1.30 5.28 84.65 0.45 1.75 16 21 N -0.92 -50.54 10.97 21.45 0.24 -50.31 16 22 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.14 7.11 5.54 86.73 0.48 7.59 16 27 C 0.05 1.08 11.20 85.24 0.95 2.03 16 28 N -0.32 -7.20 12.58 -57.02 -0.72 -7.91 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.07 0.39 7.16 -2.39 -0.02 0.37 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.20 2.31 7.26 -2.91 -0.02 2.29 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.40 9.62 6.11 -92.71 -0.57 9.06 16 41 H 0.10 2.44 7.30 -2.39 -0.02 2.42 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.08 3.03 8.03 -2.39 -0.02 3.01 16 44 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 45 H 0.38 20.55 6.98 -74.06 -0.52 20.04 16 46 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 48 H 0.03 1.66 7.82 -2.39 -0.02 1.64 16 49 H 0.19 3.10 7.72 -2.91 -0.02 3.08 16 Total: -1.00 -71.96 397.91 0.63 -71.33 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -0.12 Total: 41.76 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 7.45 Total: 25.03 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.71 Total: -118.50 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -2.01 Total: -64.10 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.96 0.63 -71.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591956896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.962 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds