Wall clock time and date at job start Tue Mar 31 2020 19:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47187 * 2 1 4 4 N 1.46505 * 109.46972 * 119.99768 * 2 1 3 5 5 C 1.34952 * 126.03746 * 274.99789 * 4 2 1 6 6 C 1.35313 * 107.74654 * 179.97438 * 5 4 2 7 7 C 1.50700 * 126.03960 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47252 * 20.00685 * 7 6 5 9 9 C 1.52995 * 109.47460 * 260.00047 * 7 6 5 10 10 N 1.46504 * 109.46700 * 140.00237 * 7 6 5 11 11 C 1.34777 * 119.99854 * 204.99839 * 10 7 6 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 7 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 7 14 14 C 1.47424 * 125.64847 * 359.42578 * 13 11 10 15 15 C 1.55124 * 104.72581 * 155.81631 * 14 13 11 16 16 C 1.55157 * 101.48746 * 37.28923 * 15 14 13 17 17 O 1.42900 * 110.71805 * 82.70019 * 16 15 14 18 18 C 1.50696 * 110.87291 * 205.90120 * 16 15 14 19 19 H 1.08001 * 120.00279 * 355.06314 * 18 16 15 20 20 C 1.37874 * 120.00042 * 175.06924 * 18 16 15 21 21 N 1.31519 * 120.00120 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00208 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47324 * 59.99724 * 22 20 18 24 24 H 1.48504 * 109.47196 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47229 * 299.99819 * 22 20 18 26 26 C 1.47023 * 125.65265 * 179.72599 * 13 11 10 27 27 C 1.39869 * 107.91877 * 0.26807 * 6 5 4 28 28 N 1.30840 * 108.20269 * 359.55103 * 27 6 5 29 29 H 1.08992 * 109.46827 * 59.99847 * 1 2 3 30 30 H 1.08994 * 109.46875 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47003 * 300.00518 * 1 2 3 32 32 H 1.08996 * 109.47197 * 239.99770 * 2 1 3 33 33 H 1.08993 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46710 * 300.00001 * 3 2 1 35 35 H 1.09002 * 109.46848 * 59.99973 * 3 2 1 36 36 H 1.08005 * 126.12443 * 0.02562 * 5 4 2 37 37 H 1.09001 * 109.47135 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47409 * 300.00542 * 9 7 6 39 39 H 1.09007 * 109.46569 * 60.00114 * 9 7 6 40 40 H 0.97000 * 120.00410 * 25.00565 * 10 7 6 41 41 H 1.09007 * 110.36232 * 274.73996 * 14 13 11 42 42 H 1.09004 * 110.37027 * 37.06173 * 14 13 11 43 43 H 1.09004 * 111.18844 * 279.18730 * 15 14 13 44 44 H 1.09001 * 110.90994 * 155.27228 * 15 14 13 45 45 H 0.96696 * 114.00505 * 185.02195 * 17 16 15 46 46 H 0.96994 * 119.99928 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.88289 * 300.44400 * 26 13 11 48 48 H 1.09004 * 109.88082 * 61.44881 * 26 13 11 49 49 H 1.08003 * 125.89470 * 179.73570 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1933 -0.1392 2.4155 6 6 2.6559 -1.1051 3.2425 7 6 2.9921 -0.9368 4.7018 8 1 2.4914 -0.0498 5.0900 9 6 4.5055 -0.7793 4.8617 10 7 2.5426 -2.1162 5.4456 11 6 2.2634 -2.0176 6.7605 12 8 2.3841 -0.9497 7.3292 13 7 1.8552 -3.1038 7.4460 14 6 1.6607 -4.4523 6.8828 15 6 1.8129 -5.4108 8.0929 16 6 1.1349 -4.5918 9.2229 17 8 -0.2839 -4.7574 9.1859 18 6 1.6805 -4.9841 10.5718 19 1 2.3834 -5.8000 10.6535 20 6 1.2823 -4.3015 11.7016 21 7 0.4267 -3.3077 11.6021 22 14 1.9580 -4.7882 13.3737 23 1 3.4362 -4.6458 13.3708 24 1 1.3782 -3.9058 14.4179 25 1 1.5973 -6.1997 13.6616 26 6 1.5242 -3.1389 8.8780 27 6 2.7732 -2.2858 2.5018 28 7 2.3856 -2.0400 1.2766 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.9982 0.8888 2.6834 37 1 4.7485 -0.6570 5.9172 38 1 5.0062 -1.6662 4.4735 39 1 4.8399 0.0983 4.3082 40 1 2.4460 -2.9681 4.9919 41 1 0.6651 -4.5417 6.4479 42 1 2.4233 -4.6641 6.1333 43 1 2.8630 -5.5950 8.3200 44 1 1.2828 -6.3468 7.9168 45 1 -0.7610 -4.2071 9.8220 46 1 0.1468 -2.8272 12.3969 47 1 2.3910 -2.8378 9.4664 48 1 0.6878 -2.4702 9.0817 49 1 3.1208 -3.2370 2.8774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591956897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:50 Heat of formation + Delta-G solvation = -1.651661 kcal Electronic energy + Delta-G solvation = -29578.391278 eV Core-core repulsion = 25542.273106 eV Total energy + Delta-G solvation = -4036.118172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55608 -39.58791 -37.53090 -36.33144 -34.89399 -34.19362 -32.18125 -31.28683 -30.44854 -29.65382 -28.64436 -27.79248 -27.64341 -25.08671 -23.82457 -22.80863 -22.36623 -20.45585 -20.23209 -19.53643 -19.16305 -17.80229 -17.07496 -16.79330 -15.67945 -15.61425 -15.29661 -15.10031 -14.80879 -14.62838 -14.33793 -14.09700 -13.73970 -13.49809 -13.28940 -13.07088 -12.88598 -12.80308 -12.77702 -12.62670 -12.45899 -12.08502 -11.90454 -11.80026 -11.68559 -11.62482 -11.39118 -11.34490 -10.99292 -10.77446 -10.62410 -10.53217 -10.47078 -10.12974 -9.60474 -9.52698 -9.26628 -8.82403 -8.63453 -8.53655 -8.26899 -7.68481 -6.23628 -4.32132 1.69332 2.21312 2.58549 3.24497 3.29385 3.31430 3.34018 3.83482 4.04194 4.30492 4.38033 4.52745 4.55532 4.58961 4.68122 4.95946 5.00540 5.04094 5.14546 5.18987 5.30813 5.32290 5.43361 5.43872 5.49670 5.65144 5.65710 5.69432 5.75203 5.82274 5.91376 6.05738 6.08731 6.22397 6.31858 6.48569 6.56316 6.77468 6.80138 6.93039 6.94940 7.06491 7.32896 7.38137 7.52639 7.73300 7.77704 8.09016 8.61539 8.71944 9.22288 9.34136 9.42718 10.84134 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.002312 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.410803 B =12110.031200 C =12351.413163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.165 4.165 4 N -0.367 5.367 5 C 0.069 3.931 6 C -0.240 4.240 7 C 0.242 3.758 8 H 0.089 0.911 9 C -0.155 4.155 10 N -0.744 5.744 11 C 0.717 3.283 12 O -0.598 6.598 13 N -0.631 5.631 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.124 3.876 27 C 0.056 3.944 28 N -0.296 5.296 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.172 0.828 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.391 0.609 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.382 0.618 46 H 0.270 0.730 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 6.946 -22.642 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 C -0.224 4.224 4 N -0.150 5.150 5 C -0.078 4.078 6 C -0.252 4.252 7 C 0.135 3.865 8 H 0.107 0.893 9 C -0.214 4.214 10 N -0.400 5.400 11 C 0.419 3.581 12 O -0.477 6.477 13 N -0.368 5.368 14 C -0.020 4.020 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.575 4.575 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.002 3.998 27 C -0.130 4.130 28 N -0.116 5.116 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.190 0.810 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.232 0.768 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.066 7.115 -23.906 25.130 hybrid contribution 0.247 0.162 1.953 1.975 sum 3.313 7.277 -21.953 23.364 Atomic orbital electron populations 1.22250 0.93554 1.03447 1.03155 1.21258 0.94868 0.92728 0.85763 1.22210 1.02366 0.94001 1.03784 1.48787 1.50537 1.07292 1.08355 1.22158 1.00426 0.99774 0.85447 1.20165 1.13812 0.94073 0.97155 1.18749 0.94273 0.88990 0.84476 0.89331 1.22167 0.95284 1.01445 1.02492 1.45201 1.73959 1.12505 1.08341 1.15497 0.78210 0.83511 0.80885 1.90874 1.61087 1.27012 1.68741 1.47959 1.69218 1.07539 1.12068 1.22264 0.99630 0.83220 0.96861 1.22755 1.00842 0.97665 0.94105 1.19504 0.79548 0.88000 0.92215 1.86103 1.19937 1.69510 1.63859 1.21449 1.27341 1.17730 0.91028 0.91641 1.25070 0.94353 0.94104 0.99750 1.69693 1.32155 1.20865 1.30485 0.86470 0.79322 0.78503 0.82642 1.20046 1.21116 1.20042 1.22832 1.00386 1.00876 0.75746 1.23655 0.99419 0.99236 0.90686 1.77345 1.20598 0.93216 1.20432 0.90485 0.91543 0.91737 0.88052 0.91412 0.89950 0.91356 0.81048 0.91683 0.92716 0.92233 0.77512 0.92089 0.92663 0.90489 0.90702 0.76804 0.91985 0.91814 0.91967 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 9.52 37.16 0.35 -0.64 16 2 C 0.16 1.03 3.93 -67.92 -0.27 0.76 16 3 C -0.17 -0.73 8.84 37.16 0.33 -0.40 16 4 N -0.37 -3.61 3.53 -54.86 -0.19 -3.81 16 5 C 0.07 0.68 10.50 -17.22 -0.18 0.50 16 6 C -0.24 -2.72 5.09 -105.05 -0.53 -3.26 16 7 C 0.24 3.19 3.00 -69.08 -0.21 2.98 16 8 H 0.09 1.30 7.57 -51.93 -0.39 0.91 16 9 C -0.16 -1.89 9.47 37.16 0.35 -1.54 16 10 N -0.74 -11.31 5.02 -59.81 -0.30 -11.61 16 11 C 0.72 14.56 8.45 -86.92 -0.73 13.83 16 12 O -0.60 -14.34 16.33 5.28 0.09 -14.25 16 13 N -0.63 -13.19 3.32 -176.10 -0.59 -13.77 16 14 C 0.10 1.83 6.58 -2.41 -0.02 1.81 16 15 C -0.12 -2.30 6.24 -24.47 -0.15 -2.45 16 16 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 17 O -0.59 -14.78 13.07 -35.23 -0.46 -15.24 16 18 C -0.54 -14.11 8.13 -34.44 -0.28 -14.39 16 19 H 0.07 1.68 7.78 -52.49 -0.41 1.28 16 20 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 21 N -0.89 -24.02 10.96 55.43 0.61 -23.41 16 22 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.12 3.05 5.23 -3.07 -0.02 3.03 16 27 C 0.06 0.64 11.20 -17.36 -0.19 0.44 16 28 N -0.30 -3.55 12.58 30.63 0.39 -3.17 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 36 H 0.17 1.25 7.26 -52.48 -0.38 0.87 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 5.12 6.12 -40.82 -0.25 4.88 16 41 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.06 0.78 7.28 -51.93 -0.38 0.40 16 43 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.38 9.88 7.45 45.56 0.34 10.22 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 48 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 49 H 0.18 1.64 7.73 -52.48 -0.41 1.24 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -32.18 397.98 -8.47 -40.65 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -7.27 Total: 14.66 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.72 Total: 8.36 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.09 Total: -55.76 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.37 Total: -29.50 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.18 -8.47 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591956897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.999 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds