Wall clock time and date at job start Tue Mar 31 2020 19:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47187 * 2 1 4 4 N 1.46505 * 109.46972 * 119.99768 * 2 1 3 5 5 C 1.34952 * 126.03746 * 274.99789 * 4 2 1 6 6 C 1.35313 * 107.74654 * 179.97438 * 5 4 2 7 7 C 1.50700 * 126.03960 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47252 * 20.00685 * 7 6 5 9 9 C 1.52995 * 109.47460 * 260.00047 * 7 6 5 10 10 N 1.46504 * 109.46700 * 140.00237 * 7 6 5 11 11 C 1.34777 * 119.99854 * 204.99839 * 10 7 6 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 7 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 7 14 14 C 1.47424 * 125.64847 * 359.42578 * 13 11 10 15 15 C 1.55124 * 104.72581 * 155.81631 * 14 13 11 16 16 C 1.55157 * 101.48746 * 37.28923 * 15 14 13 17 17 O 1.42900 * 110.71805 * 82.70019 * 16 15 14 18 18 C 1.50696 * 110.87291 * 205.90120 * 16 15 14 19 19 H 1.08001 * 120.00279 * 355.06314 * 18 16 15 20 20 C 1.37874 * 120.00042 * 175.06924 * 18 16 15 21 21 N 1.31519 * 120.00120 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00208 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47324 * 59.99724 * 22 20 18 24 24 H 1.48504 * 109.47196 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47229 * 299.99819 * 22 20 18 26 26 C 1.47023 * 125.65265 * 179.72599 * 13 11 10 27 27 C 1.39869 * 107.91877 * 0.26807 * 6 5 4 28 28 N 1.30840 * 108.20269 * 359.55103 * 27 6 5 29 29 H 1.08992 * 109.46827 * 59.99847 * 1 2 3 30 30 H 1.08994 * 109.46875 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47003 * 300.00518 * 1 2 3 32 32 H 1.08996 * 109.47197 * 239.99770 * 2 1 3 33 33 H 1.08993 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46710 * 300.00001 * 3 2 1 35 35 H 1.09002 * 109.46848 * 59.99973 * 3 2 1 36 36 H 1.08005 * 126.12443 * 0.02562 * 5 4 2 37 37 H 1.09001 * 109.47135 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47409 * 300.00542 * 9 7 6 39 39 H 1.09007 * 109.46569 * 60.00114 * 9 7 6 40 40 H 0.97000 * 120.00410 * 25.00565 * 10 7 6 41 41 H 1.09007 * 110.36232 * 274.73996 * 14 13 11 42 42 H 1.09004 * 110.37027 * 37.06173 * 14 13 11 43 43 H 1.09004 * 111.18844 * 279.18730 * 15 14 13 44 44 H 1.09001 * 110.90994 * 155.27228 * 15 14 13 45 45 H 0.96696 * 114.00505 * 185.02195 * 17 16 15 46 46 H 0.96994 * 119.99928 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.88289 * 300.44400 * 26 13 11 48 48 H 1.09004 * 109.88082 * 61.44881 * 26 13 11 49 49 H 1.08003 * 125.89470 * 179.73570 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1933 -0.1392 2.4155 6 6 2.6559 -1.1051 3.2425 7 6 2.9921 -0.9368 4.7018 8 1 2.4914 -0.0498 5.0900 9 6 4.5055 -0.7793 4.8617 10 7 2.5426 -2.1162 5.4456 11 6 2.2634 -2.0176 6.7605 12 8 2.3841 -0.9497 7.3292 13 7 1.8552 -3.1038 7.4460 14 6 1.6607 -4.4523 6.8828 15 6 1.8129 -5.4108 8.0929 16 6 1.1349 -4.5918 9.2229 17 8 -0.2839 -4.7574 9.1859 18 6 1.6805 -4.9841 10.5718 19 1 2.3834 -5.8000 10.6535 20 6 1.2823 -4.3015 11.7016 21 7 0.4267 -3.3077 11.6021 22 14 1.9580 -4.7882 13.3737 23 1 3.4362 -4.6458 13.3708 24 1 1.3782 -3.9058 14.4179 25 1 1.5973 -6.1997 13.6616 26 6 1.5242 -3.1389 8.8780 27 6 2.7732 -2.2858 2.5018 28 7 2.3856 -2.0400 1.2766 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.9982 0.8888 2.6834 37 1 4.7485 -0.6570 5.9172 38 1 5.0062 -1.6662 4.4735 39 1 4.8399 0.0983 4.3082 40 1 2.4460 -2.9681 4.9919 41 1 0.6651 -4.5417 6.4479 42 1 2.4233 -4.6641 6.1333 43 1 2.8630 -5.5950 8.3200 44 1 1.2828 -6.3468 7.9168 45 1 -0.7610 -4.2071 9.8220 46 1 0.1468 -2.8272 12.3969 47 1 2.3910 -2.8378 9.4664 48 1 0.6878 -2.4702 9.0817 49 1 3.1208 -3.2370 2.8774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591956897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:50 Heat of formation + Delta-G solvation = -24.411840 kcal Electronic energy + Delta-G solvation = -29579.378233 eV Core-core repulsion = 25542.273106 eV Total energy + Delta-G solvation = -4037.105127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.36654 -41.17522 -39.20662 -37.18196 -36.04333 -35.95914 -34.20771 -32.61991 -31.34661 -31.02361 -29.63469 -29.37039 -28.20595 -26.94563 -24.92027 -23.98604 -23.48409 -21.54109 -21.28715 -21.06251 -20.44427 -19.27504 -18.90342 -17.84278 -17.24856 -16.83023 -16.62532 -16.27165 -16.17699 -15.80491 -15.56809 -15.17097 -14.94827 -14.74729 -14.71650 -14.53994 -14.13359 -13.86452 -13.70320 -13.52733 -13.48163 -13.24911 -13.14250 -13.07765 -12.84731 -12.80386 -12.55531 -12.46546 -12.32452 -12.30626 -12.29575 -12.06077 -12.02462 -11.44027 -11.24214 -11.13574 -10.62774 -10.38482 -10.27188 -10.21163 -9.42990 -9.32605 -8.23731 -6.39554 0.91086 1.43620 1.44629 1.51609 1.52909 1.64839 1.92675 2.22297 2.39877 3.02854 3.14005 3.46953 3.83139 3.86491 3.91458 3.96596 4.08791 4.10605 4.19118 4.24228 4.33597 4.41528 4.45593 4.56278 4.62047 4.63685 4.75917 4.77223 4.80089 4.81234 4.90247 4.99874 5.06528 5.09466 5.16073 5.18198 5.22039 5.29580 5.33297 5.39744 5.53233 5.64013 5.67746 5.77096 6.06803 6.12327 6.23919 6.67108 6.72922 7.12438 7.29847 7.37275 7.63859 8.82192 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.002312 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.410803 B =12110.031200 C =12351.413163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.160 4.160 4 N -0.364 5.364 5 C 0.076 3.924 6 C -0.256 4.256 7 C 0.245 3.755 8 H 0.070 0.930 9 C -0.147 4.147 10 N -0.722 5.722 11 C 0.713 3.287 12 O -0.642 6.642 13 N -0.637 5.637 14 C 0.108 3.892 15 C -0.110 4.110 16 C 0.233 3.767 17 O -0.588 6.588 18 C -0.557 4.557 19 H 0.067 0.933 20 C 0.025 3.975 21 N -0.915 5.915 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.268 1.268 26 C 0.143 3.857 27 C 0.053 3.947 28 N -0.324 5.324 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.196 0.804 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.405 0.595 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.375 0.625 46 H 0.269 0.731 47 H 0.029 0.971 48 H 0.026 0.974 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 6.579 -24.855 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 C -0.218 4.218 4 N -0.147 5.147 5 C -0.072 4.072 6 C -0.268 4.268 7 C 0.139 3.861 8 H 0.088 0.912 9 C -0.206 4.206 10 N -0.378 5.378 11 C 0.415 3.585 12 O -0.524 6.524 13 N -0.373 5.373 14 C -0.014 4.014 15 C -0.148 4.148 16 C 0.192 3.808 17 O -0.395 6.395 18 C -0.595 4.595 19 H 0.086 0.914 20 C -0.176 4.176 21 N -0.555 5.555 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.193 1.193 26 C 0.019 3.981 27 C -0.133 4.133 28 N -0.145 5.145 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.213 0.787 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.241 0.759 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.224 0.776 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.045 0.955 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.763 6.708 -26.205 27.310 hybrid contribution 0.007 0.341 2.546 2.569 sum 3.770 7.049 -23.658 24.972 Atomic orbital electron populations 1.22222 0.93021 1.02465 1.04187 1.21590 0.95266 0.93791 0.84691 1.22202 1.02008 0.92472 1.05085 1.49098 1.49657 1.06756 1.09161 1.22533 0.98841 1.00587 0.85231 1.19959 1.15832 0.94982 0.96008 1.18769 0.94652 0.87351 0.85300 0.91158 1.22090 0.94589 1.03008 1.00922 1.45067 1.72398 1.13962 1.06373 1.15698 0.77996 0.82635 0.82195 1.90839 1.62804 1.28696 1.70070 1.47895 1.69436 1.09214 1.10795 1.22421 1.01663 0.80569 0.96748 1.22753 1.00841 0.98105 0.93076 1.19721 0.79124 0.88529 0.93384 1.86093 1.20594 1.69298 1.63551 1.21801 1.27561 1.17843 0.92301 0.91443 1.25826 0.94646 0.94074 1.03079 1.69810 1.33000 1.21557 1.31092 0.85533 0.78628 0.78352 0.78672 1.19781 1.21041 1.19264 1.22308 0.97374 1.00486 0.77908 1.23928 0.99071 0.99829 0.90445 1.77304 1.21619 0.94622 1.20942 0.87998 0.93470 0.92163 0.87884 0.91902 0.87767 0.90968 0.78717 0.94539 0.91515 0.90194 0.75893 0.91433 0.88053 0.89715 0.89248 0.77650 0.92147 0.95256 0.95549 0.78772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.52 71.98 0.69 -0.94 16 2 C 0.15 1.64 3.93 44.99 0.18 1.82 16 3 C -0.16 -0.98 8.84 71.98 0.64 -0.35 16 4 N -0.36 -6.51 3.53 -327.47 -1.15 -7.66 16 5 C 0.08 1.35 10.50 83.54 0.88 2.22 16 6 C -0.26 -5.35 5.09 -20.14 -0.10 -5.46 16 7 C 0.25 6.22 3.00 44.24 0.13 6.35 16 8 H 0.07 2.07 7.57 -2.39 -0.02 2.05 16 9 C -0.15 -3.44 9.47 71.98 0.68 -2.76 16 10 N -0.72 -21.09 5.02 -461.41 -2.32 -23.41 16 11 C 0.71 29.07 8.45 179.06 1.51 30.58 16 12 O -0.64 -31.79 16.33 -4.01 -0.07 -31.85 16 13 N -0.64 -26.60 3.32 -829.31 -2.76 -29.36 16 14 C 0.11 3.57 6.58 86.93 0.57 4.14 16 15 C -0.11 -4.20 6.24 32.06 0.20 -4.00 16 16 C 0.23 11.41 0.85 -10.36 -0.01 11.40 16 17 O -0.59 -30.09 13.07 -148.98 -1.95 -32.03 16 18 C -0.56 -29.52 8.13 25.60 0.21 -29.31 16 19 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 20 C 0.02 1.31 5.28 84.65 0.45 1.76 16 21 N -0.92 -50.72 10.96 21.45 0.24 -50.48 16 22 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.14 7.31 5.23 86.73 0.45 7.76 16 27 C 0.05 1.09 11.20 85.24 0.95 2.04 16 28 N -0.32 -7.26 12.58 -57.02 -0.72 -7.98 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.07 0.41 7.16 -2.39 -0.02 0.39 16 36 H 0.20 2.37 7.26 -2.91 -0.02 2.35 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.40 9.61 6.12 -92.71 -0.57 9.04 16 41 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.10 2.44 7.28 -2.38 -0.02 2.43 16 43 H 0.08 3.09 8.05 -2.39 -0.02 3.07 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.37 20.06 7.45 -74.06 -0.55 19.51 16 46 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 47 H 0.03 1.65 7.81 -2.39 -0.02 1.64 16 48 H 0.03 1.50 7.92 -2.39 -0.02 1.48 16 49 H 0.20 3.08 7.73 -2.91 -0.02 3.06 16 Total: -1.00 -72.38 397.98 0.57 -71.81 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.16 Total: 41.08 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 7.43 Total: 25.27 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -6.71 Total: -118.89 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -2.01 Total: -63.89 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.38 0.57 -71.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591956897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.397 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds