Wall clock time and date at job start Tue Mar 31 2020 20:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34756 * 117.00314 * 2 1 4 4 O 1.21516 * 119.99372 * 0.02562 * 3 2 1 5 5 C 1.47376 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.36668 * 125.78131 * 180.30636 * 5 3 2 7 7 N 1.34780 * 106.83759 * 180.14692 * 6 5 3 8 8 C 1.46505 * 126.58784 * 179.88346 * 7 6 5 9 9 H 1.08997 * 109.50010 * 154.78640 * 8 7 6 10 10 C 1.53123 * 109.49832 * 34.71476 * 8 7 6 11 11 C 1.53125 * 109.15571 * 182.40322 * 10 8 7 12 12 C 1.53033 * 109.27870 * 57.65382 * 11 10 8 13 13 N 1.46852 * 109.52620 * 300.81714 * 12 11 10 14 14 C 1.46895 * 111.00070 * 185.83789 * 13 12 11 15 15 C 1.53003 * 109.46879 * 75.81398 * 14 13 12 16 16 H 1.08992 * 109.47033 * 304.69093 * 15 14 13 17 17 C 1.52998 * 109.46949 * 184.69402 * 15 14 13 18 18 C 1.52996 * 109.46889 * 64.69792 * 15 14 13 19 19 C 1.50706 * 109.46950 * 185.00140 * 18 15 14 20 20 H 1.08006 * 119.99658 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00372 * 180.02562 * 19 18 15 22 22 N 1.31512 * 119.99699 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47331 * 59.99433 * 23 21 19 25 25 H 1.48505 * 109.46749 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46890 * 299.99301 * 23 21 19 27 27 C 1.46852 * 111.19255 * 61.74301 * 13 12 11 28 28 N 1.40205 * 106.82908 * 359.62155 * 7 6 5 29 29 N 1.28759 * 108.38151 * 0.24383 * 28 7 6 30 30 H 1.08996 * 109.46442 * 299.99827 * 1 2 3 31 31 H 1.09001 * 109.47148 * 59.99841 * 1 2 3 32 32 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.07998 * 126.58238 * 0.02562 * 6 5 3 34 34 H 1.08993 * 109.52639 * 62.50152 * 10 8 7 35 35 H 1.08998 * 109.52073 * 302.30232 * 10 8 7 36 36 H 1.08996 * 109.50585 * 297.70954 * 11 10 8 37 37 H 1.09002 * 109.49840 * 177.59061 * 11 10 8 38 38 H 1.08998 * 109.46545 * 180.80395 * 12 11 10 39 39 H 1.09004 * 109.45478 * 60.82783 * 12 11 10 40 40 H 1.09000 * 109.47277 * 315.80900 * 14 13 12 41 41 H 1.09009 * 109.46901 * 195.81032 * 14 13 12 42 42 H 1.09000 * 109.47137 * 294.56823 * 17 15 14 43 43 H 1.08991 * 109.47394 * 174.56615 * 17 15 14 44 44 H 1.09007 * 109.47139 * 54.56448 * 17 15 14 45 45 H 1.09002 * 109.47392 * 304.99422 * 18 15 14 46 46 H 1.09000 * 109.47778 * 65.00171 * 18 15 14 47 47 H 0.97003 * 120.00103 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.46312 * 58.27750 * 27 13 12 49 49 H 1.08998 * 109.45815 * 178.24437 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5356 1.2777 -0.0006 6 6 4.2756 2.4267 0.0053 7 7 5.5715 2.0565 -0.0009 8 6 6.7344 2.9477 -0.0005 9 1 7.5901 2.4290 0.4318 10 6 6.4211 4.1962 0.8288 11 6 7.6186 5.1489 0.7747 12 6 7.9185 5.5011 -0.6840 13 7 8.2125 4.2737 -1.4348 14 6 8.6400 4.5846 -2.8054 15 6 10.0824 5.0945 -2.7863 16 1 10.1582 5.9447 -2.1086 17 6 10.4886 5.5284 -4.1961 18 6 11.0121 3.9771 -2.3089 19 6 12.4137 4.5137 -2.1725 20 1 12.6207 5.5483 -2.4037 21 6 13.4320 3.6839 -1.7537 22 7 13.1800 2.4241 -1.4727 23 14 15.1695 4.3489 -1.5853 24 1 15.1815 5.4581 -0.5980 25 1 16.0718 3.2644 -1.1218 26 1 15.6362 4.8530 -2.9019 27 6 7.0599 3.3637 -1.4367 28 7 5.5932 0.6546 -0.0019 29 7 4.3777 0.2297 -0.0017 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8950 3.4374 0.0115 34 1 6.2310 3.9085 1.8628 35 1 5.5413 4.6934 0.4204 36 1 8.4887 4.6654 1.2186 37 1 7.3852 6.0585 1.3280 38 1 8.7796 6.1680 -0.7271 39 1 7.0528 5.9969 -1.1232 40 1 7.9888 5.3519 -3.2239 41 1 8.5809 3.6844 -3.4174 42 1 10.5059 4.6588 -4.8531 43 1 11.4799 5.9805 -4.1657 44 1 9.7693 6.2550 -4.5741 45 1 10.6692 3.6071 -1.3427 46 1 11.0037 3.1629 -3.0336 47 1 13.8963 1.8402 -1.1777 48 1 6.1984 3.8696 -1.8725 49 1 7.2974 2.4782 -2.0263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602614387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:04 Heat of formation + Delta-G solvation = -15.329159 kcal Electronic energy + Delta-G solvation = -29176.900553 eV Core-core repulsion = 25140.189280 eV Total energy + Delta-G solvation = -4036.711273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.48929 -41.24383 -40.30442 -37.57355 -37.47507 -35.53867 -34.28343 -33.06511 -32.39101 -30.99555 -29.01803 -28.69409 -27.36793 -25.67512 -25.02838 -24.92703 -23.83791 -22.93033 -22.02892 -20.80207 -20.43762 -19.31163 -18.43167 -18.18344 -17.68636 -17.51485 -16.87968 -16.60556 -16.54237 -16.03025 -15.77209 -15.48590 -15.22223 -14.95218 -14.79104 -14.53856 -14.33505 -14.17619 -13.93485 -13.73063 -13.46353 -13.33626 -12.96747 -12.92319 -12.75019 -12.74304 -12.64454 -12.58290 -12.23818 -12.11367 -11.91156 -11.90759 -11.85340 -11.82682 -11.73476 -11.39140 -11.26653 -10.88689 -10.86863 -10.54208 -10.44543 -9.15974 -8.09403 -6.17595 -0.05972 0.31731 0.79647 1.41232 1.43194 1.50684 1.60924 1.84285 2.45787 2.88499 3.08917 3.20026 3.23706 3.51224 3.63693 3.72147 3.82880 3.94438 4.10371 4.11381 4.21843 4.29488 4.33080 4.37222 4.44708 4.47682 4.51667 4.56588 4.62146 4.74104 4.75817 4.78717 4.84481 4.91316 4.96312 4.99780 5.13855 5.18028 5.26974 5.33431 5.37285 5.47660 5.53841 5.68549 5.93767 6.05345 6.16997 6.22542 6.40315 6.46708 6.82953 7.01670 7.49656 9.01544 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.002219 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.263824 B =12613.135947 C =13017.693138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.564 3.436 4 O -0.518 6.518 5 C -0.115 4.115 6 C 0.127 3.873 7 N -0.339 5.339 8 C 0.152 3.848 9 H 0.106 0.894 10 C -0.120 4.120 11 C -0.107 4.107 12 C 0.049 3.951 13 N -0.548 5.548 14 C 0.076 3.924 15 C -0.075 4.075 16 H 0.059 0.941 17 C -0.128 4.128 18 C 0.047 3.953 19 C -0.526 4.526 20 H 0.057 0.943 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.953 3.047 24 H -0.267 1.267 25 H -0.289 1.289 26 H -0.270 1.270 27 C 0.058 3.942 28 N -0.088 5.088 29 N -0.208 5.208 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.005 0.995 46 H -0.027 1.027 47 H 0.258 0.742 48 H 0.059 0.941 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.706 5.220 4.054 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.407 3.593 4 O -0.407 6.407 5 C -0.253 4.253 6 C -0.032 4.032 7 N -0.121 5.121 8 C 0.051 3.949 9 H 0.124 0.876 10 C -0.159 4.159 11 C -0.146 4.146 12 C -0.078 4.078 13 N -0.273 5.273 14 C -0.051 4.051 15 C -0.094 4.094 16 H 0.077 0.923 17 C -0.186 4.186 18 C 0.010 3.990 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.779 3.221 24 H -0.192 1.192 25 H -0.215 1.215 26 H -0.195 1.195 27 C -0.071 4.071 28 N -0.068 5.068 29 N -0.082 5.082 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.261 0.739 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.023 0.977 46 H -0.009 1.009 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.546 3.866 4.335 24.252 hybrid contribution 0.174 0.787 -0.406 0.902 sum -23.372 4.653 3.928 24.153 Atomic orbital electron populations 1.23678 0.73535 1.06030 1.03199 1.86642 1.25716 1.31285 1.83360 1.19368 0.86006 0.81951 0.71956 1.90859 1.65893 1.36220 1.47727 1.20486 0.92839 0.90220 1.21721 1.23828 0.82928 1.02144 0.94254 1.50854 1.07044 1.07174 1.47071 1.21855 0.84496 0.90111 0.98405 0.87594 1.22062 1.00695 0.92617 1.00504 1.21533 0.97128 1.00081 0.95826 1.22282 1.00740 0.90611 0.94170 1.61587 1.33851 1.15994 1.15840 1.22063 0.95763 0.99558 0.87747 1.21056 0.93420 0.98213 0.96667 0.92295 1.21634 1.00888 1.00203 0.95865 1.18848 0.92661 0.92720 0.94761 1.21717 0.95013 0.96401 1.43291 0.92431 1.25890 1.03166 0.95157 0.95739 1.70113 1.33656 1.06211 1.47533 0.85685 0.79763 0.77904 0.78773 1.19198 1.21495 1.19490 1.22243 0.93278 0.97349 0.94268 1.82194 1.13377 0.87994 1.23241 1.74777 0.97121 1.26937 1.09330 0.91081 0.91210 0.85152 0.73948 0.89121 0.88037 0.92282 0.87479 0.90867 0.92632 0.92795 0.92602 0.94375 0.93667 0.91511 0.97675 1.00909 0.93314 0.92251 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.35 -7.46 10.57 -56.67 -0.60 -8.06 16 3 C 0.56 12.69 7.96 70.23 0.56 13.25 16 4 O -0.52 -12.11 16.65 19.78 0.33 -11.78 16 5 C -0.11 -2.69 7.02 40.78 0.29 -2.40 16 6 C 0.13 2.25 10.40 83.87 0.87 3.12 16 7 N -0.34 -7.44 3.55 -326.25 -1.16 -8.60 16 8 C 0.15 3.16 3.39 45.04 0.15 3.32 16 9 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 10 C -0.12 -1.63 4.98 30.68 0.15 -1.47 16 11 C -0.11 -1.79 6.09 30.65 0.19 -1.61 16 12 C 0.05 1.03 5.29 86.32 0.46 1.49 16 13 N -0.55 -15.18 3.94 -896.34 -3.53 -18.71 16 14 C 0.08 2.28 4.40 86.31 0.38 2.66 16 15 C -0.07 -2.80 2.39 -10.79 -0.03 -2.83 16 16 H 0.06 2.19 6.71 -2.39 -0.02 2.17 16 17 C -0.13 -4.41 8.91 71.98 0.64 -3.77 16 18 C 0.05 2.41 4.39 29.85 0.13 2.54 16 19 C -0.53 -29.23 8.48 25.60 0.22 -29.01 16 20 H 0.06 3.06 7.06 -2.91 -0.02 3.04 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 22 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 23 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 C 0.06 1.35 5.03 86.32 0.43 1.79 16 28 N -0.09 -2.59 13.78 37.02 0.51 -2.08 16 29 N -0.21 -6.00 12.39 -50.04 -0.62 -6.62 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.24 2.14 7.28 -2.91 -0.02 2.12 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 0.82 7.11 -2.39 -0.02 0.80 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.79 6.65 -2.39 -0.02 1.77 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.05 1.31 8.00 -2.39 -0.02 1.29 16 41 H 0.06 1.81 7.79 -2.38 -0.02 1.79 16 42 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.04 1.68 7.12 -2.39 -0.02 1.67 16 44 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.00 0.27 7.61 -2.39 -0.02 0.25 16 46 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 47 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 1.74 7.93 -2.39 -0.02 1.73 16 Total: -1.00 -74.20 399.05 4.28 -69.92 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.93 Total: 7.79 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 6.10 Total: -11.06 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -4.52 Total: -93.32 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.27 Total: -19.84 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -74.20 4.28 -69.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602614387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.591 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds