Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53002 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47479 * 65.00309 * 4 3 2 6 6 C 1.46506 * 119.99925 * 270.00011 * 5 4 3 7 7 C 1.50699 * 109.46706 * 269.99864 * 6 5 4 8 8 H 1.07998 * 120.00471 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99849 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99839 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99904 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47144 * 89.99764 * 11 9 7 13 13 H 1.48505 * 109.46777 * 209.99771 * 11 9 7 14 14 H 1.48495 * 109.47122 * 329.99509 * 11 9 7 15 15 C 1.34777 * 120.00195 * 89.99263 * 5 4 3 16 16 O 1.21603 * 119.99960 * 0.02562 * 15 5 4 17 17 N 1.34777 * 119.99726 * 180.27548 * 15 5 4 18 18 C 1.40851 * 119.99560 * 179.72622 * 17 15 5 19 19 C 1.40235 * 126.07632 * 359.69374 * 18 17 15 20 20 N 1.30839 * 108.33766 * 179.87871 * 19 18 17 21 21 N 1.40066 * 108.36584 * 0.37860 * 20 19 18 22 22 C 1.46504 * 126.05996 * 179.73431 * 21 20 19 23 23 H 1.09004 * 109.47017 * 335.03195 * 22 21 20 24 24 C 1.52998 * 109.47398 * 215.02873 * 22 21 20 25 25 C 1.53007 * 109.47011 * 95.02460 * 22 21 20 26 26 C 1.52996 * 117.49836 * 248.62563 * 25 22 21 27 27 C 1.53001 * 117.49853 * 179.97438 * 25 22 21 28 28 C 1.35728 * 126.07346 * 180.02562 * 18 17 15 29 29 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 31 31 H 1.09004 * 109.46884 * 59.99882 * 1 2 3 32 32 H 1.08991 * 109.47132 * 60.00086 * 3 2 1 33 33 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 34 34 H 1.08994 * 109.47266 * 305.00135 * 4 3 2 35 35 H 1.09005 * 109.46685 * 184.99965 * 4 3 2 36 36 H 1.08994 * 109.46858 * 29.99458 * 6 5 4 37 37 H 1.09001 * 109.47111 * 149.99563 * 6 5 4 38 38 H 0.96999 * 119.99761 * 179.97438 * 10 9 7 39 39 H 0.97000 * 120.00483 * 359.73178 * 17 15 5 40 40 H 1.07990 * 125.82947 * 359.97438 * 19 18 17 41 41 H 1.09000 * 109.46634 * 299.99889 * 24 22 21 42 42 H 1.09001 * 109.47159 * 59.99708 * 24 22 21 43 43 H 1.09000 * 109.47327 * 180.02562 * 24 22 21 44 44 H 1.08999 * 115.54602 * 34.33394 * 25 22 21 45 45 H 1.08997 * 117.50104 * 359.97438 * 26 25 22 46 46 H 1.08999 * 117.49862 * 145.02083 * 26 25 22 47 47 H 1.08991 * 117.49877 * 214.97955 * 27 25 22 48 48 H 1.08998 * 117.49669 * 359.97438 * 27 25 22 49 49 H 1.08000 * 126.21589 * 359.92603 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2978 -0.9449 8 1 6.2198 -0.5460 -0.6545 9 6 5.8606 -2.6289 -0.9528 10 7 4.9854 -3.5444 -1.3070 11 14 7.5910 -3.1317 -0.4602 12 1 7.6356 -3.3845 1.0024 13 1 7.9732 -4.3683 -1.1883 14 1 8.5397 -2.0420 -0.8034 15 6 4.2615 1.3338 -2.3218 16 8 4.1544 2.5428 -2.2470 17 7 4.6612 0.7627 -3.4754 18 6 4.9543 1.5664 -4.5944 19 6 4.8684 2.9649 -4.6519 20 7 5.2209 3.3500 -5.8516 21 7 5.5359 2.2123 -6.6055 22 6 5.9723 2.1982 -8.0040 23 1 5.6102 3.0950 -8.5067 24 6 5.4079 0.9591 -8.7019 25 6 7.5009 2.1637 -8.0608 26 6 8.2166 3.4101 -8.5853 27 6 8.1562 2.1441 -9.4433 28 6 5.3640 1.1244 -5.8105 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 3.3853 -1.3629 -0.6735 37 1 3.9120 -1.2114 -2.3669 38 1 5.2386 -4.4808 -1.3128 39 1 4.7470 -0.2016 -3.5350 40 1 4.5648 3.6134 -3.8435 41 1 5.7701 0.0624 -8.1991 42 1 4.3189 0.9837 -8.6614 43 1 5.7330 0.9484 -9.7422 44 1 7.9883 1.6005 -7.2650 45 1 7.5985 4.2545 -8.8903 46 1 9.1751 3.6673 -8.1345 47 1 9.0749 1.5687 -9.5566 48 1 7.4983 2.1553 -10.3122 49 1 5.5250 0.0948 -6.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614698565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = 39.356281 kcal Electronic energy + Delta-G solvation = -29575.359395 eV Core-core repulsion = 25541.019461 eV Total energy + Delta-G solvation = -4034.339934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02286 -39.37757 -38.02895 -37.38799 -34.96186 -34.23971 -33.14143 -32.58299 -29.91457 -29.35281 -28.17800 -26.97682 -25.82987 -24.55226 -22.92072 -22.69490 -22.54242 -21.67294 -20.80250 -19.80790 -18.90020 -17.37539 -17.12592 -16.52219 -15.98476 -15.88523 -15.59598 -15.27203 -15.15833 -14.83952 -14.51494 -14.28372 -14.09992 -13.84844 -13.56138 -13.34917 -13.12523 -12.59733 -12.48881 -12.39391 -12.13684 -12.01062 -11.79936 -11.69209 -11.44592 -11.42927 -11.32130 -10.95359 -10.86000 -10.72984 -10.56845 -10.45946 -10.26652 -10.15219 -10.12859 -9.71139 -9.37182 -9.21032 -9.02234 -8.52386 -7.78022 -7.06941 -6.14166 -4.21929 2.13022 2.57885 3.16414 3.24385 3.31517 3.35306 3.49134 3.52903 4.09349 4.23724 4.31751 4.35943 4.53957 4.68893 4.77910 4.85331 4.95678 4.98737 5.17845 5.18583 5.32332 5.39251 5.44131 5.45856 5.53509 5.61999 5.67664 5.70579 5.71652 5.77056 5.81721 5.84674 5.89011 5.94729 5.99439 6.06822 6.14106 6.42962 6.72481 6.88657 7.25393 7.28966 7.44708 7.51522 7.53269 7.80351 7.88664 8.09275 8.11883 8.66273 8.90925 9.34546 9.46981 10.91557 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.003394 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.895915 B = 8246.991908 C =10196.878369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.603 5.603 6 C 0.243 3.757 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.712 3.288 16 O -0.615 6.615 17 N -0.656 5.656 18 C 0.044 3.956 19 C 0.049 3.951 20 N -0.293 5.293 21 N -0.371 5.371 22 C 0.202 3.798 23 H 0.098 0.902 24 C -0.162 4.162 25 C -0.169 4.169 26 C -0.172 4.172 27 C -0.171 4.171 28 C -0.002 4.002 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.417 0.583 40 H 0.206 0.794 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 7.812 -11.368 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.336 5.336 6 C 0.123 3.877 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.414 3.586 16 O -0.497 6.497 17 N -0.304 5.304 18 C -0.062 4.062 19 C -0.138 4.138 20 N -0.114 5.114 21 N -0.158 5.158 22 C 0.099 3.901 23 H 0.116 0.884 24 C -0.220 4.220 25 C -0.189 4.189 26 C -0.209 4.209 27 C -0.208 4.208 28 C -0.148 4.148 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.256 0.744 40 H 0.222 0.778 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.280 9.207 -12.143 15.292 hybrid contribution 0.736 -1.619 0.912 1.999 sum -0.545 7.588 -11.231 13.565 Atomic orbital electron populations 1.22668 0.82301 1.02290 0.99120 1.88055 1.18546 1.27571 1.95201 1.23087 0.95525 0.84835 0.99749 1.21208 0.90740 0.99442 0.86956 1.47267 1.67662 1.09097 1.09613 1.19367 0.97382 0.73114 0.97877 1.21589 0.97347 0.92407 1.46476 0.92143 1.24929 0.97448 0.96364 0.94987 1.69938 1.34300 1.01154 1.47421 0.86547 0.84483 0.78003 0.78730 1.20527 1.21173 1.19889 1.15700 0.77900 0.84703 0.80284 1.90663 1.62576 1.12717 1.83783 1.42151 1.69589 1.10147 1.08545 1.17590 1.09419 0.91277 0.87897 1.24523 1.00068 0.94045 0.95211 1.77278 1.21292 1.08371 1.04480 1.48251 1.54146 1.03494 1.09908 1.20581 0.91588 1.00537 0.77359 0.88434 1.22147 1.01787 0.97079 1.00953 1.22725 0.94035 1.03459 0.98632 1.23027 1.02467 0.91922 1.03475 1.22974 1.02664 1.01594 0.93609 1.21650 1.08470 0.93828 0.90869 0.89970 0.94762 0.94716 0.93273 0.93298 0.89503 0.89321 0.92875 0.95668 0.92619 0.74403 0.77795 0.91192 0.91394 0.90294 0.87167 0.88496 0.88697 0.88468 0.88497 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.72 9.53 -35.23 -0.34 -7.06 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.14 2.60 5.81 -4.04 -0.02 2.58 16 5 N -0.60 -12.86 2.42 -180.80 -0.44 -13.29 16 6 C 0.24 5.78 4.75 -5.19 -0.02 5.76 16 7 C -0.54 -13.99 9.39 -34.44 -0.32 -14.31 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 11 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.71 15.30 8.25 -86.92 -0.72 14.58 16 16 O -0.62 -13.65 13.08 5.27 0.07 -13.58 16 17 N -0.66 -13.04 5.34 -14.39 -0.08 -13.11 16 18 C 0.04 0.81 6.90 -83.86 -0.58 0.23 16 19 C 0.05 0.92 10.84 -17.22 -0.19 0.73 16 20 N -0.29 -5.09 12.57 30.70 0.39 -4.70 16 21 N -0.37 -5.43 3.55 -54.52 -0.19 -5.63 16 22 C 0.20 2.16 3.56 -67.93 -0.24 1.92 16 23 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 24 C -0.16 -1.35 8.68 37.16 0.32 -1.03 16 25 C -0.17 -1.69 5.45 -90.62 -0.49 -2.18 16 26 C -0.17 -1.54 10.18 -26.70 -0.27 -1.81 16 27 C -0.17 -1.28 9.74 -26.70 -0.26 -1.54 16 28 C 0.00 -0.03 10.65 -16.67 -0.18 -0.20 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 35 H 0.09 1.56 7.42 -51.93 -0.39 1.18 16 36 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 37 H 0.03 0.62 6.36 -51.93 -0.33 0.29 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.42 8.31 6.55 -40.82 -0.27 8.04 16 40 H 0.21 4.00 5.91 -52.49 -0.31 3.69 16 41 H 0.07 0.59 7.17 -51.93 -0.37 0.22 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.49 7.28 -51.93 -0.38 0.11 16 44 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.59 7.60 -51.93 -0.39 0.20 16 49 H 0.17 2.17 7.29 -52.49 -0.38 1.79 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -30.72 403.69 -8.31 -39.03 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -7.79 Total: 11.37 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.73 Total: 8.90 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.41 Total: -60.31 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.27 Total: -20.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.72 -8.31 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614698565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.386 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds