Wall clock time and date at job start Tue Mar 31 2020 19:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53002 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47479 * 65.00309 * 4 3 2 6 6 C 1.46506 * 119.99925 * 270.00011 * 5 4 3 7 7 C 1.50699 * 109.46706 * 269.99864 * 6 5 4 8 8 H 1.07998 * 120.00471 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99849 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99839 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99904 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47144 * 89.99764 * 11 9 7 13 13 H 1.48505 * 109.46777 * 209.99771 * 11 9 7 14 14 H 1.48495 * 109.47122 * 329.99509 * 11 9 7 15 15 C 1.34777 * 120.00195 * 89.99263 * 5 4 3 16 16 O 1.21603 * 119.99960 * 0.02562 * 15 5 4 17 17 N 1.34777 * 119.99726 * 180.27548 * 15 5 4 18 18 C 1.40851 * 119.99560 * 179.72622 * 17 15 5 19 19 C 1.40235 * 126.07632 * 359.69374 * 18 17 15 20 20 N 1.30839 * 108.33766 * 179.87871 * 19 18 17 21 21 N 1.40066 * 108.36584 * 0.37860 * 20 19 18 22 22 C 1.46504 * 126.05996 * 179.73431 * 21 20 19 23 23 H 1.09004 * 109.47017 * 335.03195 * 22 21 20 24 24 C 1.52998 * 109.47398 * 215.02873 * 22 21 20 25 25 C 1.53007 * 109.47011 * 95.02460 * 22 21 20 26 26 C 1.52996 * 117.49836 * 248.62563 * 25 22 21 27 27 C 1.53001 * 117.49853 * 179.97438 * 25 22 21 28 28 C 1.35728 * 126.07346 * 180.02562 * 18 17 15 29 29 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 31 31 H 1.09004 * 109.46884 * 59.99882 * 1 2 3 32 32 H 1.08991 * 109.47132 * 60.00086 * 3 2 1 33 33 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 34 34 H 1.08994 * 109.47266 * 305.00135 * 4 3 2 35 35 H 1.09005 * 109.46685 * 184.99965 * 4 3 2 36 36 H 1.08994 * 109.46858 * 29.99458 * 6 5 4 37 37 H 1.09001 * 109.47111 * 149.99563 * 6 5 4 38 38 H 0.96999 * 119.99761 * 179.97438 * 10 9 7 39 39 H 0.97000 * 120.00483 * 359.73178 * 17 15 5 40 40 H 1.07990 * 125.82947 * 359.97438 * 19 18 17 41 41 H 1.09000 * 109.46634 * 299.99889 * 24 22 21 42 42 H 1.09001 * 109.47159 * 59.99708 * 24 22 21 43 43 H 1.09000 * 109.47327 * 180.02562 * 24 22 21 44 44 H 1.08999 * 115.54602 * 34.33394 * 25 22 21 45 45 H 1.08997 * 117.50104 * 359.97438 * 26 25 22 46 46 H 1.08999 * 117.49862 * 145.02083 * 26 25 22 47 47 H 1.08991 * 117.49877 * 214.97955 * 27 25 22 48 48 H 1.08998 * 117.49669 * 359.97438 * 27 25 22 49 49 H 1.08000 * 126.21589 * 359.92603 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2978 -0.9449 8 1 6.2198 -0.5460 -0.6545 9 6 5.8606 -2.6289 -0.9528 10 7 4.9854 -3.5444 -1.3070 11 14 7.5910 -3.1317 -0.4602 12 1 7.6356 -3.3845 1.0024 13 1 7.9732 -4.3683 -1.1883 14 1 8.5397 -2.0420 -0.8034 15 6 4.2615 1.3338 -2.3218 16 8 4.1544 2.5428 -2.2470 17 7 4.6612 0.7627 -3.4754 18 6 4.9543 1.5664 -4.5944 19 6 4.8684 2.9649 -4.6519 20 7 5.2209 3.3500 -5.8516 21 7 5.5359 2.2123 -6.6055 22 6 5.9723 2.1982 -8.0040 23 1 5.6102 3.0950 -8.5067 24 6 5.4079 0.9591 -8.7019 25 6 7.5009 2.1637 -8.0608 26 6 8.2166 3.4101 -8.5853 27 6 8.1562 2.1441 -9.4433 28 6 5.3640 1.1244 -5.8105 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 3.3853 -1.3629 -0.6735 37 1 3.9120 -1.2114 -2.3669 38 1 5.2386 -4.4808 -1.3128 39 1 4.7470 -0.2016 -3.5350 40 1 4.5648 3.6134 -3.8435 41 1 5.7701 0.0624 -8.1991 42 1 4.3189 0.9837 -8.6614 43 1 5.7330 0.9484 -9.7422 44 1 7.9883 1.6005 -7.2650 45 1 7.5985 4.2545 -8.8903 46 1 9.1751 3.6673 -8.1345 47 1 9.0749 1.5687 -9.5566 48 1 7.4983 2.1553 -10.3122 49 1 5.5250 0.0948 -6.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614698565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:06 Heat of formation + Delta-G solvation = 21.503561 kcal Electronic energy + Delta-G solvation = -29576.133547 eV Core-core repulsion = 25541.019461 eV Total energy + Delta-G solvation = -4035.114086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.35071 -40.93544 -38.92485 -38.64167 -36.63857 -35.70612 -34.53563 -34.18846 -31.38095 -30.51247 -29.56690 -28.66472 -27.05918 -25.49590 -24.81982 -24.09388 -23.20080 -22.84500 -22.10503 -20.98161 -20.28020 -18.84205 -18.69550 -18.33181 -17.38458 -17.16705 -16.78549 -16.44908 -16.39193 -16.30285 -16.05222 -15.62803 -15.41829 -15.02252 -14.83846 -14.69100 -14.30250 -14.07699 -13.75296 -13.60699 -13.42243 -13.26138 -13.07740 -12.93053 -12.74477 -12.71075 -12.59816 -12.35275 -12.19740 -12.13378 -11.89783 -11.78223 -11.65849 -11.62460 -11.38591 -11.03721 -10.96807 -10.59449 -10.49508 -10.27471 -9.48711 -8.52424 -8.14489 -6.30722 0.84035 1.42205 1.42504 1.44713 1.53780 1.68215 1.97403 2.41206 2.53651 2.82348 2.98833 3.13133 3.17723 3.55292 3.75177 3.86955 4.01048 4.04632 4.10862 4.20894 4.25547 4.28576 4.38396 4.42819 4.55909 4.57668 4.59617 4.68170 4.69178 4.73974 4.80182 4.86158 4.91724 4.95210 4.98987 5.00851 5.16075 5.21746 5.24425 5.31653 5.34133 5.66216 5.83487 5.95911 6.10562 6.14303 6.19677 6.37560 6.70859 6.76081 7.09499 7.41275 7.71013 8.88982 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.003394 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.895915 B = 8246.991908 C =10196.878369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.055 3.945 4 C 0.135 3.865 5 N -0.607 5.607 6 C 0.264 3.736 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.026 3.974 10 N -0.916 5.916 11 Si 0.955 3.045 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.276 1.276 15 C 0.705 3.295 16 O -0.627 6.627 17 N -0.654 5.654 18 C 0.007 3.993 19 C 0.033 3.967 20 N -0.306 5.306 21 N -0.358 5.358 22 C 0.193 3.807 23 H 0.103 0.897 24 C -0.157 4.157 25 C -0.186 4.186 26 C -0.183 4.183 27 C -0.142 4.142 28 C 0.022 3.978 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.031 0.969 37 H 0.017 0.983 38 H 0.267 0.733 39 H 0.415 0.585 40 H 0.189 0.811 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.118 0.882 49 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 7.386 -13.022 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.023 4.023 4 C 0.011 3.989 5 N -0.341 5.341 6 C 0.143 3.857 7 C -0.586 4.586 8 H 0.067 0.933 9 C -0.175 4.175 10 N -0.555 5.555 11 Si 0.780 3.220 12 H -0.202 1.202 13 H -0.204 1.204 14 H -0.201 1.201 15 C 0.407 3.593 16 O -0.510 6.510 17 N -0.302 5.302 18 C -0.099 4.099 19 C -0.154 4.154 20 N -0.129 5.129 21 N -0.144 5.144 22 C 0.092 3.908 23 H 0.121 0.879 24 C -0.215 4.215 25 C -0.205 4.205 26 C -0.220 4.220 27 C -0.180 4.180 28 C -0.126 4.126 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.049 0.951 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.206 0.794 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.109 0.891 47 H 0.125 0.875 48 H 0.136 0.864 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.622 8.815 -13.823 16.406 hybrid contribution 0.540 -1.452 1.310 2.029 sum -0.082 7.363 -12.512 14.518 Atomic orbital electron populations 1.22857 0.80167 1.03262 1.00512 1.88002 1.21006 1.28358 1.95469 1.22975 0.93836 0.84668 1.00785 1.21387 0.92568 0.99301 0.85625 1.47262 1.68043 1.08137 1.10612 1.18924 0.95775 0.74472 0.96559 1.21718 0.97953 0.92429 1.46530 0.93303 1.25584 1.00734 0.96302 0.94862 1.70023 1.35889 1.01481 1.48079 0.85614 0.80284 0.77617 0.78439 1.20188 1.20388 1.20071 1.15850 0.78134 0.84670 0.80684 1.90653 1.63230 1.13046 1.84065 1.42062 1.69440 1.10034 1.08658 1.17831 1.12188 0.91229 0.88621 1.24276 1.01337 0.94207 0.95540 1.77220 1.21782 1.09565 1.04290 1.48733 1.52094 1.02540 1.10994 1.21029 0.92385 1.02186 0.75172 0.87875 1.22172 1.01415 0.95612 1.02285 1.22598 0.93253 1.04515 1.00176 1.23106 1.02260 0.92366 1.04247 1.23089 1.02716 0.99594 0.92574 1.22065 1.05681 0.95137 0.89738 0.89310 0.92368 0.94232 0.89933 0.94320 0.90001 0.88732 0.95088 0.96536 0.92352 0.74666 0.79432 0.91072 0.91797 0.87408 0.88990 0.88224 0.89051 0.87497 0.86386 0.78341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -14.66 9.53 -148.98 -1.42 -16.08 16 3 C 0.05 1.80 6.28 71.98 0.45 2.25 16 4 C 0.13 5.06 5.81 86.38 0.50 5.57 16 5 N -0.61 -26.61 2.42 -844.17 -2.04 -28.65 16 6 C 0.26 12.92 4.75 85.63 0.41 13.33 16 7 C -0.55 -28.81 9.39 25.60 0.24 -28.57 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 9 C 0.03 1.36 5.46 84.66 0.46 1.82 16 10 N -0.92 -50.16 13.29 21.45 0.28 -49.87 16 11 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 15 C 0.70 31.20 8.25 179.05 1.48 32.68 16 16 O -0.63 -28.73 13.08 -4.04 -0.05 -28.78 16 17 N -0.65 -26.68 5.34 -317.70 -1.70 -28.37 16 18 C 0.01 0.24 6.90 37.59 0.26 0.50 16 19 C 0.03 1.26 10.84 85.33 0.92 2.18 16 20 N -0.31 -10.69 12.57 -56.79 -0.71 -11.41 16 21 N -0.36 -10.14 3.55 -326.41 -1.16 -11.30 16 22 C 0.19 3.74 3.56 44.99 0.16 3.90 16 23 H 0.10 1.92 7.90 -2.38 -0.02 1.90 16 24 C -0.16 -2.16 8.68 71.98 0.62 -1.54 16 25 C -0.19 -3.37 5.45 -10.79 -0.06 -3.43 16 26 C -0.18 -2.96 10.18 30.61 0.31 -2.65 16 27 C -0.14 -1.67 9.74 30.61 0.30 -1.38 16 28 C 0.02 0.66 10.65 83.49 0.89 1.55 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 3.11 8.07 -2.39 -0.02 3.09 16 35 H 0.09 3.39 7.42 -2.38 -0.02 3.37 16 36 H 0.03 1.66 7.11 -2.39 -0.02 1.64 16 37 H 0.02 0.84 6.36 -2.39 -0.02 0.83 16 38 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.42 16.95 6.55 -92.71 -0.61 16.34 16 40 H 0.19 7.76 5.91 -2.92 -0.02 7.74 16 41 H 0.07 0.99 7.17 -2.39 -0.02 0.97 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 0.89 7.28 -2.39 -0.02 0.88 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.55 8.05 -2.39 -0.02 1.53 16 46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.12 0.92 7.60 -2.39 -0.02 0.90 16 49 H 0.20 4.68 7.29 -2.91 -0.02 4.66 16 Total: -1.00 -66.98 403.69 3.77 -63.21 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.35 Total: 38.95 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 8.20 Total: 28.21 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -5.33 Total: -129.60 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.47 Total: -44.86 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.98 3.77 -63.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614698565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.714 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds