Wall clock time and date at job start Tue Mar 31 2020 19:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00412 * 2 1 4 4 C 1.52996 * 109.47895 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47083 * 64.99270 * 4 3 2 6 6 C 1.46495 * 120.00570 * 270.00487 * 5 4 3 7 7 C 1.50694 * 109.47480 * 270.00210 * 6 5 4 8 8 H 1.08005 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00409 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99666 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00263 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47694 * 89.99540 * 11 9 7 13 13 H 1.48506 * 109.47038 * 209.99782 * 11 9 7 14 14 H 1.48502 * 109.46944 * 329.99150 * 11 9 7 15 15 C 1.34776 * 119.99601 * 90.00524 * 5 4 3 16 16 O 1.21604 * 120.00026 * 180.02562 * 15 5 4 17 17 N 1.34776 * 120.00152 * 359.97438 * 15 5 4 18 18 C 1.40850 * 120.00145 * 179.97438 * 17 15 5 19 19 C 1.40237 * 126.07311 * 0.03062 * 18 17 15 20 20 N 1.30844 * 108.34079 * 179.97438 * 19 18 17 21 21 N 1.40074 * 108.36206 * 0.02562 * 20 19 18 22 22 C 1.46499 * 126.05621 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47496 * 25.02880 * 22 21 20 24 24 C 1.53000 * 109.46736 * 145.02720 * 22 21 20 25 25 C 1.53001 * 109.47375 * 265.02509 * 22 21 20 26 26 C 1.53000 * 117.50223 * 180.02562 * 25 22 21 27 27 C 1.52997 * 117.49889 * 111.37624 * 25 22 21 28 28 C 1.35725 * 126.07454 * 180.28919 * 18 17 15 29 29 H 1.08999 * 109.47301 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47668 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46951 * 300.00323 * 1 2 3 32 32 H 1.09002 * 109.47142 * 59.99760 * 3 2 1 33 33 H 1.09005 * 109.47078 * 300.00248 * 3 2 1 34 34 H 1.09006 * 109.46803 * 305.00090 * 4 3 2 35 35 H 1.08998 * 109.47765 * 184.99833 * 4 3 2 36 36 H 1.09004 * 109.47232 * 30.00484 * 6 5 4 37 37 H 1.09008 * 109.47481 * 149.99615 * 6 5 4 38 38 H 0.97000 * 119.99817 * 180.02562 * 10 9 7 39 39 H 0.97001 * 120.00197 * 0.02562 * 17 15 5 40 40 H 1.07995 * 125.83008 * 359.97438 * 19 18 17 41 41 H 1.08997 * 109.47409 * 299.99589 * 24 22 21 42 42 H 1.09007 * 109.47169 * 60.00268 * 24 22 21 43 43 H 1.09005 * 109.47267 * 179.97438 * 24 22 21 44 44 H 1.09002 * 115.55911 * 325.69052 * 25 22 21 45 45 H 1.08990 * 117.49990 * 145.01974 * 26 25 22 46 46 H 1.09004 * 117.49237 * 359.97438 * 26 25 22 47 47 H 1.08999 * 117.49685 * 0.02562 * 27 25 22 48 48 H 1.08997 * 117.50044 * 214.98097 * 27 25 22 49 49 H 1.07997 * 126.21913 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2979 -0.9448 8 1 6.2198 -0.5460 -0.6544 9 6 5.8606 -2.6289 -0.9526 10 7 4.9853 -3.5445 -1.3068 11 14 7.5904 -3.1319 -0.4587 12 1 7.6339 -3.3851 1.0039 13 1 7.9732 -4.3684 -1.1867 14 1 8.5395 -2.0422 -0.8009 15 6 4.2615 1.3336 -2.3218 16 8 4.6265 0.8187 -3.3612 17 7 4.1418 2.6735 -2.2392 18 6 4.4411 3.4775 -3.3563 19 6 4.8712 3.0212 -4.6106 20 7 5.0459 4.0587 -5.3885 21 7 4.7347 5.2138 -4.6599 22 6 4.7975 6.5902 -5.1575 23 1 4.6847 6.5902 -6.2416 24 6 3.6713 7.4122 -4.5276 25 6 6.1478 7.2060 -4.7854 26 6 6.4094 8.6498 -5.2188 27 6 7.1290 7.4970 -5.9227 28 6 4.3691 4.8318 -3.4085 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9785 2.1765 0.0889 36 1 3.3852 -1.3630 -0.6734 37 1 3.9119 -1.2115 -2.3668 38 1 5.2382 -4.4809 -1.3119 39 1 3.8504 3.0843 -1.4102 40 1 5.0309 1.9896 -4.8873 41 1 2.7093 6.9736 -4.7927 42 1 3.7842 7.4123 -3.4434 43 1 3.7183 8.4365 -4.8975 44 1 6.5647 6.8838 -3.8312 45 1 6.9985 9.2771 -4.5499 46 1 5.6196 9.1609 -5.7694 47 1 6.8124 7.2501 -6.9361 48 1 8.1914 7.3663 -5.7167 49 1 4.0730 5.4867 -2.6024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614698568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:12 Heat of formation + Delta-G solvation = 46.764740 kcal Electronic energy + Delta-G solvation = -29417.136777 eV Core-core repulsion = 25383.118098 eV Total energy + Delta-G solvation = -4034.018679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16194 -39.44300 -38.13263 -37.52089 -34.97128 -34.32935 -33.31834 -32.44575 -29.63580 -29.51846 -28.71650 -26.79002 -25.92122 -24.67795 -22.91693 -22.72313 -22.63729 -21.82549 -20.89558 -19.98666 -18.99478 -17.64824 -17.31336 -16.38924 -16.14876 -15.97122 -15.57533 -15.37800 -15.29271 -14.84923 -14.61441 -14.36887 -14.01307 -13.86900 -13.73688 -13.41227 -13.20309 -12.78240 -12.56695 -12.34532 -12.25249 -12.11141 -11.91420 -11.79306 -11.65644 -11.45901 -11.19288 -10.88200 -10.84143 -10.81965 -10.60270 -10.37438 -10.35884 -10.28758 -10.03730 -9.52309 -9.44299 -9.14752 -9.13408 -8.30144 -7.74348 -7.23507 -5.91321 -3.95077 1.99109 2.44742 3.08422 3.34860 3.37780 3.42104 3.44334 3.50035 3.98281 4.13329 4.20207 4.41316 4.46333 4.57403 4.59314 4.72272 4.80698 4.82398 5.00101 5.17834 5.26612 5.27202 5.29532 5.38727 5.42369 5.46003 5.51195 5.53085 5.54820 5.56079 5.58631 5.66309 5.74823 5.80682 5.85696 5.87196 5.94421 6.20492 6.60935 6.92732 7.13963 7.31845 7.40759 7.60736 7.67864 7.78629 7.98548 8.08320 8.38391 8.71970 9.05641 9.36325 9.69086 11.16412 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.002917 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.491685 B = 9595.801302 C =11332.189936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.112 3.888 5 N -0.599 5.599 6 C 0.265 3.735 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.702 3.298 16 O -0.571 6.571 17 N -0.672 5.672 18 C 0.044 3.956 19 C 0.054 3.946 20 N -0.288 5.288 21 N -0.372 5.372 22 C 0.201 3.799 23 H 0.099 0.901 24 C -0.160 4.160 25 C -0.170 4.170 26 C -0.171 4.171 27 C -0.171 4.171 28 C -0.007 4.007 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.397 0.603 40 H 0.209 0.791 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 24.619 -0.750 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.334 5.334 6 C 0.146 3.854 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.403 3.597 16 O -0.448 6.448 17 N -0.323 5.323 18 C -0.062 4.062 19 C -0.134 4.134 20 N -0.109 5.109 21 N -0.158 5.158 22 C 0.098 3.902 23 H 0.117 0.883 24 C -0.218 4.218 25 C -0.189 4.189 26 C -0.209 4.209 27 C -0.208 4.208 28 C -0.154 4.154 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.232 0.768 40 H 0.225 0.775 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.439 24.257 -2.687 25.004 hybrid contribution 0.382 -0.133 1.779 1.824 sum -5.058 24.124 -0.909 24.665 Atomic orbital electron populations 1.22699 0.82023 1.02648 0.99066 1.88105 1.18715 1.26708 1.95116 1.23133 0.95360 0.85653 0.99452 1.21447 0.91161 0.98523 0.90155 1.47493 1.67848 1.09448 1.08572 1.19260 0.96588 0.70571 0.99025 1.21501 0.97570 0.92161 1.45122 0.92679 1.24898 0.97256 0.96432 0.95460 1.69946 1.34275 1.00924 1.48166 0.86551 0.84875 0.78044 0.78228 1.20807 1.21204 1.20006 1.15862 0.79148 0.79809 0.84844 1.90762 1.53088 1.71976 1.28933 1.42288 1.71903 1.05230 1.12844 1.17559 1.09757 0.88978 0.89929 1.24659 0.98740 0.99670 0.90303 1.77367 1.22656 0.90549 1.20299 1.48291 1.53929 1.05373 1.08242 1.20593 0.93681 0.76255 0.99656 0.88304 1.22135 0.97564 1.00127 1.01979 1.22706 0.96900 0.98788 1.00491 1.22979 1.03488 0.90520 1.03870 1.23040 0.98290 1.02261 0.97239 1.21536 1.09239 0.94034 0.90570 0.94612 0.89709 0.94724 0.93112 0.93747 0.88581 0.90830 0.93499 0.94074 0.92893 0.76768 0.77469 0.91417 0.91438 0.90249 0.87290 0.88475 0.88483 0.88399 0.88622 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.25 9.53 -35.23 -0.34 -6.59 16 3 C 0.04 0.58 6.28 37.16 0.23 0.82 16 4 C 0.11 1.77 5.58 -4.04 -0.02 1.75 16 5 N -0.60 -12.77 2.42 -180.80 -0.44 -13.20 16 6 C 0.26 7.06 4.98 -5.20 -0.03 7.03 16 7 C -0.52 -15.12 9.39 -34.44 -0.32 -15.45 16 8 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 11 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 C 0.70 14.99 8.25 -86.92 -0.72 14.28 16 16 O -0.57 -14.54 13.08 5.27 0.07 -14.47 16 17 N -0.67 -10.92 5.34 -14.39 -0.08 -11.00 16 18 C 0.04 0.71 6.90 -83.86 -0.58 0.13 16 19 C 0.05 0.99 10.84 -17.22 -0.19 0.81 16 20 N -0.29 -4.83 12.57 30.70 0.39 -4.45 16 21 N -0.37 -4.84 3.55 -54.53 -0.19 -5.03 16 22 C 0.20 1.84 3.55 -67.93 -0.24 1.60 16 23 H 0.10 0.92 7.90 -51.93 -0.41 0.51 16 24 C -0.16 -1.02 8.68 37.16 0.32 -0.69 16 25 C -0.17 -1.43 5.45 -90.62 -0.49 -1.92 16 26 C -0.17 -1.05 9.74 -26.71 -0.26 -1.31 16 27 C -0.17 -1.37 10.18 -26.71 -0.27 -1.64 16 28 C -0.01 -0.09 10.65 -16.67 -0.18 -0.27 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 35 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 36 H 0.05 1.30 7.12 -51.93 -0.37 0.93 16 37 H 0.04 1.25 7.42 -51.92 -0.39 0.86 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.40 4.95 6.56 -40.82 -0.27 4.68 16 40 H 0.21 4.31 5.91 -52.49 -0.31 4.00 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.39 7.17 -51.92 -0.37 0.02 16 43 H 0.08 0.36 7.29 -51.93 -0.38 -0.02 16 44 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.47 7.61 -51.93 -0.39 0.08 16 47 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.17 1.44 7.29 -52.49 -0.38 1.06 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -36.18 403.71 -8.31 -44.49 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.79 Total: 4.88 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.73 Total: 8.34 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.41 Total: -60.08 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.27 Total: -21.06 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.18 -8.31 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614698568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.251 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds