Wall clock time and date at job start Tue Mar 31 2020 19:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00412 * 2 1 4 4 C 1.52996 * 109.47895 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47083 * 64.99270 * 4 3 2 6 6 C 1.46495 * 120.00570 * 270.00487 * 5 4 3 7 7 C 1.50694 * 109.47480 * 270.00210 * 6 5 4 8 8 H 1.08005 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00409 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99666 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00263 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47694 * 89.99540 * 11 9 7 13 13 H 1.48506 * 109.47038 * 209.99782 * 11 9 7 14 14 H 1.48502 * 109.46944 * 329.99150 * 11 9 7 15 15 C 1.34776 * 119.99601 * 90.00524 * 5 4 3 16 16 O 1.21604 * 120.00026 * 180.02562 * 15 5 4 17 17 N 1.34776 * 120.00152 * 359.97438 * 15 5 4 18 18 C 1.40850 * 120.00145 * 179.97438 * 17 15 5 19 19 C 1.40237 * 126.07311 * 0.03062 * 18 17 15 20 20 N 1.30844 * 108.34079 * 179.97438 * 19 18 17 21 21 N 1.40074 * 108.36206 * 0.02562 * 20 19 18 22 22 C 1.46499 * 126.05621 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47496 * 25.02880 * 22 21 20 24 24 C 1.53000 * 109.46736 * 145.02720 * 22 21 20 25 25 C 1.53001 * 109.47375 * 265.02509 * 22 21 20 26 26 C 1.53000 * 117.50223 * 180.02562 * 25 22 21 27 27 C 1.52997 * 117.49889 * 111.37624 * 25 22 21 28 28 C 1.35725 * 126.07454 * 180.28919 * 18 17 15 29 29 H 1.08999 * 109.47301 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47668 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46951 * 300.00323 * 1 2 3 32 32 H 1.09002 * 109.47142 * 59.99760 * 3 2 1 33 33 H 1.09005 * 109.47078 * 300.00248 * 3 2 1 34 34 H 1.09006 * 109.46803 * 305.00090 * 4 3 2 35 35 H 1.08998 * 109.47765 * 184.99833 * 4 3 2 36 36 H 1.09004 * 109.47232 * 30.00484 * 6 5 4 37 37 H 1.09008 * 109.47481 * 149.99615 * 6 5 4 38 38 H 0.97000 * 119.99817 * 180.02562 * 10 9 7 39 39 H 0.97001 * 120.00197 * 0.02562 * 17 15 5 40 40 H 1.07995 * 125.83008 * 359.97438 * 19 18 17 41 41 H 1.08997 * 109.47409 * 299.99589 * 24 22 21 42 42 H 1.09007 * 109.47169 * 60.00268 * 24 22 21 43 43 H 1.09005 * 109.47267 * 179.97438 * 24 22 21 44 44 H 1.09002 * 115.55911 * 325.69052 * 25 22 21 45 45 H 1.08990 * 117.49990 * 145.01974 * 26 25 22 46 46 H 1.09004 * 117.49237 * 359.97438 * 26 25 22 47 47 H 1.08999 * 117.49685 * 0.02562 * 27 25 22 48 48 H 1.08997 * 117.50044 * 214.98097 * 27 25 22 49 49 H 1.07997 * 126.21913 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2979 -0.9448 8 1 6.2198 -0.5460 -0.6544 9 6 5.8606 -2.6289 -0.9526 10 7 4.9853 -3.5445 -1.3068 11 14 7.5904 -3.1319 -0.4587 12 1 7.6339 -3.3851 1.0039 13 1 7.9732 -4.3684 -1.1867 14 1 8.5395 -2.0422 -0.8009 15 6 4.2615 1.3336 -2.3218 16 8 4.6265 0.8187 -3.3612 17 7 4.1418 2.6735 -2.2392 18 6 4.4411 3.4775 -3.3563 19 6 4.8712 3.0212 -4.6106 20 7 5.0459 4.0587 -5.3885 21 7 4.7347 5.2138 -4.6599 22 6 4.7975 6.5902 -5.1575 23 1 4.6847 6.5902 -6.2416 24 6 3.6713 7.4122 -4.5276 25 6 6.1478 7.2060 -4.7854 26 6 6.4094 8.6498 -5.2188 27 6 7.1290 7.4970 -5.9227 28 6 4.3691 4.8318 -3.4085 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9785 2.1765 0.0889 36 1 3.3852 -1.3630 -0.6734 37 1 3.9119 -1.2115 -2.3668 38 1 5.2382 -4.4809 -1.3119 39 1 3.8504 3.0843 -1.4102 40 1 5.0309 1.9896 -4.8873 41 1 2.7093 6.9736 -4.7927 42 1 3.7842 7.4123 -3.4434 43 1 3.7183 8.4365 -4.8975 44 1 6.5647 6.8838 -3.8312 45 1 6.9985 9.2771 -4.5499 46 1 5.6196 9.1609 -5.7694 47 1 6.8124 7.2501 -6.9361 48 1 8.1914 7.3663 -5.7167 49 1 4.0730 5.4867 -2.6024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614698568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:11 Heat of formation + Delta-G solvation = 21.886120 kcal Electronic energy + Delta-G solvation = -29418.215595 eV Core-core repulsion = 25383.118098 eV Total energy + Delta-G solvation = -4035.097497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.36653 -40.94206 -38.90786 -38.66618 -36.58743 -35.79602 -34.68361 -34.10808 -31.09116 -30.62568 -29.90342 -28.50545 -27.08063 -25.56245 -24.78806 -23.99824 -23.19868 -22.88704 -22.17647 -21.02436 -20.29784 -18.98666 -18.59977 -18.48457 -17.38941 -17.07226 -16.73203 -16.57559 -16.36815 -16.27933 -16.04567 -15.56840 -15.45688 -15.03714 -14.91056 -14.66056 -14.28998 -14.08114 -13.78189 -13.56139 -13.35034 -13.28485 -13.03636 -12.90558 -12.82506 -12.73867 -12.50368 -12.35509 -12.19509 -12.14137 -11.95218 -11.75900 -11.70904 -11.59068 -11.38420 -11.00849 -10.89863 -10.57589 -10.50502 -10.28354 -9.47400 -8.55734 -8.13101 -6.28480 0.86595 1.37642 1.41310 1.42330 1.51763 1.69264 1.91699 2.40962 2.54286 2.83049 2.98817 3.10208 3.16576 3.56020 3.77106 3.87737 4.02568 4.05653 4.11629 4.17643 4.26066 4.28300 4.35417 4.40130 4.47801 4.55930 4.57888 4.64547 4.70544 4.74705 4.81796 4.88610 4.94606 4.96501 5.00101 5.16363 5.17866 5.22105 5.25343 5.29323 5.36432 5.64477 5.88696 5.90434 6.13188 6.16181 6.22644 6.40004 6.73270 6.81692 7.20957 7.37822 7.76553 8.92341 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.002917 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.491685 B = 9595.801302 C =11332.189936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.045 3.955 4 C 0.105 3.895 5 N -0.606 5.606 6 C 0.289 3.711 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.275 1.275 15 C 0.695 3.305 16 O -0.625 6.625 17 N -0.647 5.647 18 C 0.006 3.994 19 C 0.023 3.977 20 N -0.314 5.314 21 N -0.358 5.358 22 C 0.190 3.810 23 H 0.095 0.905 24 C -0.154 4.154 25 C -0.180 4.180 26 C -0.139 4.139 27 C -0.192 4.192 28 C 0.036 3.964 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.032 0.968 37 H -0.011 1.011 38 H 0.265 0.735 39 H 0.418 0.582 40 H 0.171 0.829 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 29.002 1.376 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.033 4.033 4 C -0.018 4.018 5 N -0.340 5.340 6 C 0.168 3.832 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.397 3.603 16 O -0.505 6.505 17 N -0.298 5.298 18 C -0.099 4.099 19 C -0.163 4.163 20 N -0.136 5.136 21 N -0.144 5.144 22 C 0.090 3.910 23 H 0.113 0.887 24 C -0.212 4.212 25 C -0.199 4.199 26 C -0.177 4.177 27 C -0.230 4.230 28 C -0.112 4.112 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.007 0.993 38 H 0.074 0.926 39 H 0.258 0.742 40 H 0.188 0.812 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.135 0.865 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.719 28.730 -0.533 29.298 hybrid contribution 0.432 -1.316 1.030 1.726 sum -5.287 27.414 0.497 27.924 Atomic orbital electron populations 1.22838 0.80124 1.03027 1.00720 1.88045 1.21044 1.28912 1.95504 1.23202 0.93399 0.84931 1.01734 1.21838 0.93247 0.99881 0.86859 1.47269 1.68328 1.07598 1.10760 1.18551 0.95343 0.74124 0.95226 1.21781 0.98390 0.92499 1.45176 0.93029 1.25832 1.01674 0.96435 0.95273 1.70079 1.36477 1.01340 1.48980 0.85444 0.79261 0.77439 0.78782 1.18756 1.20791 1.19984 1.16040 0.78914 0.81387 0.83992 1.90749 1.55274 1.73491 1.30977 1.41750 1.71100 1.03113 1.13880 1.17715 1.12655 0.90336 0.89224 1.24213 1.01033 0.98797 0.92298 1.77298 1.23795 0.91522 1.21033 1.48810 1.51452 1.05922 1.08205 1.21054 0.95656 0.74400 0.99929 0.88728 1.22164 0.95657 1.00675 1.02710 1.22608 0.96309 1.01023 1.00002 1.23087 1.02890 0.89178 1.02509 1.23106 0.98180 1.04536 0.97131 1.22206 1.05128 0.92900 0.91005 0.94069 0.90190 0.91766 0.88575 0.93291 0.89916 0.86426 0.94989 0.99275 0.92611 0.74227 0.81239 0.91832 0.89987 0.87686 0.88235 0.87179 0.86548 0.88829 0.89187 0.76271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -14.07 9.53 -148.98 -1.42 -15.49 16 3 C 0.04 1.14 6.28 71.98 0.45 1.59 16 4 C 0.10 3.18 5.58 86.38 0.48 3.66 16 5 N -0.61 -26.67 2.42 -844.19 -2.04 -28.71 16 6 C 0.29 16.41 4.98 85.63 0.43 16.84 16 7 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 9 C 0.01 0.38 5.46 84.65 0.46 0.85 16 10 N -0.93 -58.54 13.29 21.45 0.28 -58.25 16 11 Si 0.97 46.79 29.54 68.60 2.03 48.81 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 14 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 15 C 0.70 30.91 8.25 179.05 1.48 32.38 16 16 O -0.62 -34.40 13.08 -4.04 -0.05 -34.46 16 17 N -0.65 -20.54 5.34 -317.70 -1.70 -22.24 16 18 C 0.01 0.18 6.90 37.59 0.26 0.44 16 19 C 0.02 0.88 10.84 85.33 0.92 1.81 16 20 N -0.31 -10.84 12.57 -56.78 -0.71 -11.55 16 21 N -0.36 -8.71 3.55 -326.43 -1.16 -9.87 16 22 C 0.19 2.97 3.55 44.99 0.16 3.13 16 23 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 24 C -0.15 -1.25 8.68 71.98 0.63 -0.63 16 25 C -0.18 -2.55 5.45 -10.79 -0.06 -2.61 16 26 C -0.14 -1.19 9.74 30.61 0.30 -0.89 16 27 C -0.19 -2.78 10.18 30.61 0.31 -2.47 16 28 C 0.04 0.80 10.65 83.49 0.89 1.69 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 2.75 8.07 -2.38 -0.02 2.73 16 35 H 0.12 2.45 6.36 -2.39 -0.02 2.44 16 36 H 0.03 1.89 7.12 -2.38 -0.02 1.87 16 37 H -0.01 -0.72 7.42 -2.38 -0.02 -0.74 16 38 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 39 H 0.42 9.19 6.56 -92.71 -0.61 8.58 16 40 H 0.17 7.93 5.91 -2.91 -0.02 7.91 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.47 7.17 -2.38 -0.02 0.45 16 43 H 0.10 0.38 7.29 -2.38 -0.02 0.36 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.12 0.58 7.61 -2.38 -0.02 0.56 16 47 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 48 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.22 2.43 7.29 -2.91 -0.02 2.41 16 Total: -1.00 -87.79 403.71 3.77 -84.02 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.35 Total: 22.13 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 8.20 Total: 25.60 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -5.33 Total: -130.62 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.47 Total: -49.95 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -87.79 3.77 -84.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614698568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.906 kcal (2) G-P(sol) polarization free energy of solvation -87.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds