Wall clock time and date at job start Tue Mar 31 2020 20:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34753 * 117.00044 * 2 1 4 4 O 1.21521 * 119.99926 * 0.02562 * 3 2 1 5 5 C 1.47380 * 120.00288 * 179.97438 * 3 2 1 6 6 C 1.36665 * 125.78588 * 180.24481 * 5 3 2 7 7 N 1.34784 * 106.84005 * 180.17956 * 6 5 3 8 8 C 1.46497 * 126.58764 * 179.90722 * 7 6 5 9 9 C 1.53123 * 109.51994 * 84.71034 * 8 7 6 10 10 C 1.53038 * 109.27863 * 182.43907 * 9 8 7 11 11 N 1.46848 * 109.51321 * 59.18668 * 10 9 8 12 12 C 1.46895 * 110.99950 * 174.15758 * 11 10 9 13 13 C 1.53000 * 109.47098 * 294.09550 * 12 11 10 14 14 H 1.08998 * 109.47179 * 56.88169 * 13 12 11 15 15 C 1.53004 * 109.47009 * 296.88225 * 13 12 11 16 16 C 1.53004 * 109.47217 * 176.88683 * 13 12 11 17 17 C 1.50700 * 109.47230 * 184.99846 * 16 13 12 18 18 H 1.08001 * 119.99649 * 0.02562 * 17 16 13 19 19 C 1.37874 * 119.99959 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99467 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00049 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46666 * 90.00028 * 21 19 17 23 23 H 1.48500 * 109.47049 * 209.99826 * 21 19 17 24 24 H 1.48498 * 109.47122 * 330.00423 * 21 19 17 25 25 C 1.46853 * 111.19376 * 298.24193 * 11 10 9 26 26 C 1.53031 * 109.51550 * 61.76289 * 25 11 10 27 27 N 1.40212 * 106.82316 * 359.64449 * 7 6 5 28 28 N 1.28755 * 108.38755 * 0.22866 * 27 7 6 29 29 H 1.09004 * 109.46909 * 299.99895 * 1 2 3 30 30 H 1.08997 * 109.47229 * 59.99672 * 1 2 3 31 31 H 1.08993 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.08003 * 126.58000 * 0.05292 * 6 5 3 33 33 H 1.08997 * 109.52252 * 204.83237 * 8 7 6 34 34 H 1.09004 * 109.50416 * 62.49907 * 9 8 7 35 35 H 1.08997 * 109.50495 * 302.38341 * 9 8 7 36 36 H 1.09000 * 109.46374 * 179.19703 * 10 9 8 37 37 H 1.08998 * 109.46279 * 299.17611 * 10 9 8 38 38 H 1.09002 * 109.47457 * 54.09874 * 12 11 10 39 39 H 1.09003 * 109.46911 * 174.09322 * 12 11 10 40 40 H 1.08994 * 109.46962 * 184.85808 * 15 13 12 41 41 H 1.08997 * 109.47032 * 304.86568 * 15 13 12 42 42 H 1.09001 * 109.46508 * 64.85821 * 15 13 12 43 43 H 1.08996 * 109.46820 * 304.99836 * 16 13 12 44 44 H 1.09000 * 109.46905 * 64.99753 * 16 13 12 45 45 H 0.97005 * 120.00076 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.47342 * 301.74052 * 25 11 10 47 47 H 1.09000 * 109.45202 * 181.76678 * 25 11 10 48 48 H 1.08998 * 109.50185 * 180.87419 * 26 25 11 49 49 H 1.09000 * 109.51042 * 60.75258 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5356 1.2778 0.0006 6 6 4.2755 2.4268 0.0054 7 7 5.5715 2.0566 0.0000 8 6 6.7343 2.9478 0.0004 9 6 7.0636 3.3586 1.4383 10 6 8.2403 4.3370 1.4273 11 7 7.8881 5.5189 0.6301 12 6 8.9401 6.5409 0.7108 13 6 9.0234 7.0752 2.1420 14 1 9.2042 6.2481 2.8286 15 6 7.7062 7.7627 2.5072 16 6 10.1701 8.0830 2.2443 17 6 10.3312 8.5169 3.6785 18 1 9.6809 8.1138 4.4408 19 6 11.3092 9.4276 4.0175 20 7 11.4500 9.8058 5.2691 21 14 12.4352 10.1231 2.6992 22 1 11.8319 11.3563 2.1332 23 1 13.7556 10.4471 3.2966 24 1 12.6131 9.1188 1.6199 25 6 7.6140 5.1551 -0.7660 26 6 6.4186 4.2012 -0.8205 27 7 5.5931 0.6546 0.0002 28 7 4.3777 0.2298 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8949 3.4375 0.0102 33 1 7.5893 2.4312 -0.4357 34 1 7.3308 2.4745 2.0172 35 1 6.1946 3.8394 1.8875 36 1 8.4681 4.6425 2.4485 37 1 9.1126 3.8510 0.9905 38 1 9.8971 6.1002 0.4311 39 1 8.7045 7.3594 0.0305 40 1 7.7954 8.2180 3.4935 41 1 7.4821 8.5335 1.7699 42 1 6.9029 7.0260 2.5183 43 1 11.0938 7.6184 1.8993 44 1 9.9468 8.9515 1.6248 45 1 12.1378 10.4468 5.5077 46 1 8.4893 4.6652 -1.1925 47 1 7.3869 6.0549 -1.3377 48 1 6.2250 3.9191 -1.8554 49 1 5.5394 4.6953 -0.4069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:54 Heat of formation + Delta-G solvation = 6.543180 kcal Electronic energy + Delta-G solvation = -28788.427640 eV Core-core repulsion = 24752.664823 eV Total energy + Delta-G solvation = -4035.762817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.69684 -40.47050 -39.50496 -36.80224 -36.45995 -34.43814 -32.39373 -31.71607 -31.28830 -31.08024 -28.23871 -27.59285 -26.37931 -24.71842 -24.12521 -23.60223 -22.66617 -21.68841 -21.26957 -20.05362 -18.99818 -18.68870 -17.42778 -16.94836 -16.90760 -16.69813 -16.03574 -15.75302 -15.22677 -15.11196 -14.72814 -14.41223 -14.23513 -14.05047 -13.89225 -13.74177 -13.51026 -13.08044 -12.77736 -12.61969 -12.40406 -12.34106 -12.16781 -11.81931 -11.71862 -11.65749 -11.55421 -11.37927 -11.16727 -11.10853 -11.01528 -10.99978 -10.76647 -10.60588 -10.47787 -9.80295 -9.79002 -9.71053 -9.49076 -9.12331 -8.56140 -8.34145 -6.06259 -4.03618 0.66831 1.16447 1.53062 2.30215 2.64691 3.27317 3.35282 3.37321 3.74710 3.78913 3.81498 4.16489 4.28264 4.40696 4.42316 4.48053 4.70386 4.74261 4.78589 4.82955 4.90329 4.96199 5.08899 5.14864 5.21448 5.25891 5.27965 5.35281 5.44450 5.50873 5.59378 5.65019 5.77194 5.85386 5.90556 5.92584 6.00078 6.17410 6.29381 6.49322 6.73767 6.90168 7.01241 7.09093 7.13628 7.24366 7.25293 7.41130 7.62371 7.77716 8.52280 8.99122 9.56378 11.07066 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.001907 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.691659 B =14676.138221 C =15010.333671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.559 3.441 4 O -0.505 6.505 5 C -0.098 4.098 6 C 0.111 3.889 7 N -0.346 5.346 8 C 0.147 3.853 9 C -0.125 4.125 10 C 0.055 3.945 11 N -0.536 5.536 12 C 0.059 3.941 13 C -0.073 4.073 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.009 4.009 17 C -0.514 4.514 18 H 0.074 0.926 19 C 0.065 3.935 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.060 3.940 26 C -0.128 4.128 27 N -0.060 5.060 28 N -0.186 5.186 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.208 0.792 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.037 0.963 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.451 -17.099 -14.719 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.402 3.598 4 O -0.392 6.392 5 C -0.235 4.235 6 C -0.047 4.047 7 N -0.128 5.128 8 C 0.046 3.954 9 C -0.164 4.164 10 C -0.073 4.073 11 N -0.260 5.260 12 C -0.068 4.068 13 C -0.092 4.092 14 H 0.080 0.920 15 C -0.181 4.181 16 C -0.047 4.047 17 C -0.552 4.552 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.192 1.192 25 C -0.069 4.069 26 C -0.167 4.167 27 N -0.040 5.040 28 N -0.060 5.060 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.224 0.776 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.086 -17.735 -14.417 27.949 hybrid contribution 0.742 1.135 -0.928 1.643 sum -15.344 -16.601 -15.345 27.322 Atomic orbital electron populations 1.23356 0.75593 1.04060 1.02778 1.86642 1.23578 1.31604 1.83765 1.19421 0.86148 0.81851 0.72416 1.90898 1.65677 1.35938 1.46637 1.20178 0.92515 0.89802 1.20997 1.23306 0.83968 1.01314 0.96137 1.50874 1.06377 1.07834 1.47752 1.21971 0.84957 0.88985 0.99481 1.22078 1.00964 0.99966 0.93415 1.22108 0.94634 0.89846 1.00718 1.61996 1.44572 1.10471 1.08997 1.22359 0.90963 0.93364 1.00093 1.21059 0.97126 0.98487 0.92541 0.91967 1.21594 0.95820 0.99024 1.01711 1.19610 0.93104 0.93999 0.97999 1.21107 1.17107 1.24712 0.92255 0.90827 1.25032 0.97190 0.96240 0.95120 1.69911 1.34163 1.33261 1.16953 0.86806 0.80403 0.79722 0.82468 1.20372 1.21490 1.19181 1.21997 0.95682 0.98521 0.90736 1.22075 1.01064 0.93629 0.99887 1.82101 1.13411 0.86386 1.22088 1.74782 0.96685 1.25747 1.08781 0.91578 0.91652 0.87726 0.77580 0.86783 0.90161 0.89803 0.88412 0.94383 0.95060 0.90945 0.92019 0.94268 0.93865 0.96977 0.97050 0.92794 0.94457 0.89462 0.90252 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.34 -3.43 10.57 -40.63 -0.43 -3.86 16 3 C 0.56 6.15 7.96 34.45 0.27 6.42 16 4 O -0.50 -6.12 16.65 -19.28 -0.32 -6.44 16 5 C -0.10 -1.07 7.02 -83.57 -0.59 -1.65 16 6 C 0.11 0.97 10.40 -16.82 -0.17 0.79 16 7 N -0.35 -3.15 3.55 -54.43 -0.19 -3.34 16 8 C 0.15 1.10 3.30 -67.81 -0.22 0.88 16 9 C -0.13 -1.06 5.70 -26.65 -0.15 -1.22 16 10 C 0.06 0.57 5.30 -3.83 -0.02 0.55 16 11 N -0.54 -5.88 4.12 -234.67 -0.97 -6.85 16 12 C 0.06 0.82 4.37 -3.83 -0.02 0.80 16 13 C -0.07 -1.30 2.24 -90.62 -0.20 -1.50 16 14 H 0.06 1.14 6.30 -51.93 -0.33 0.81 16 15 C -0.12 -2.17 8.89 37.16 0.33 -1.84 16 16 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 17 C -0.51 -13.98 8.89 -34.44 -0.31 -14.29 16 18 H 0.07 2.16 7.32 -52.49 -0.38 1.77 16 19 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 20 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 21 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 25 C 0.06 0.49 5.46 -3.83 -0.02 0.47 16 26 C -0.13 -0.84 5.08 -26.65 -0.14 -0.97 16 27 N -0.06 -0.70 13.78 60.35 0.83 0.13 16 28 N -0.19 -2.30 12.39 32.83 0.41 -1.90 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.21 1.24 7.28 -52.48 -0.38 0.86 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.17 6.16 -51.93 -0.32 0.85 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 39 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 40 H 0.06 1.24 6.82 -51.93 -0.35 0.89 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.67 7.84 -51.93 -0.41 0.26 16 43 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 44 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.69 8.01 -51.93 -0.42 0.28 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.56 7.11 -51.93 -0.37 0.19 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -32.50 394.84 -6.94 -39.43 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -7.96 Total: -4.29 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.36 Total: -8.82 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.85 Total: -38.53 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.75 Total: -10.30 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.50 -6.94 -39.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.976 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds