Wall clock time and date at job start Tue Mar 31 2020 20:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34753 * 117.00044 * 2 1 4 4 O 1.21521 * 119.99926 * 0.02562 * 3 2 1 5 5 C 1.47380 * 120.00288 * 179.97438 * 3 2 1 6 6 C 1.36665 * 125.78588 * 180.24481 * 5 3 2 7 7 N 1.34784 * 106.84005 * 180.17956 * 6 5 3 8 8 C 1.46497 * 126.58764 * 179.90722 * 7 6 5 9 9 C 1.53123 * 109.51994 * 84.71034 * 8 7 6 10 10 C 1.53038 * 109.27863 * 182.43907 * 9 8 7 11 11 N 1.46848 * 109.51321 * 59.18668 * 10 9 8 12 12 C 1.46895 * 110.99950 * 174.15758 * 11 10 9 13 13 C 1.53000 * 109.47098 * 294.09550 * 12 11 10 14 14 H 1.08998 * 109.47179 * 56.88169 * 13 12 11 15 15 C 1.53004 * 109.47009 * 296.88225 * 13 12 11 16 16 C 1.53004 * 109.47217 * 176.88683 * 13 12 11 17 17 C 1.50700 * 109.47230 * 184.99846 * 16 13 12 18 18 H 1.08001 * 119.99649 * 0.02562 * 17 16 13 19 19 C 1.37874 * 119.99959 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99467 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00049 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46666 * 90.00028 * 21 19 17 23 23 H 1.48500 * 109.47049 * 209.99826 * 21 19 17 24 24 H 1.48498 * 109.47122 * 330.00423 * 21 19 17 25 25 C 1.46853 * 111.19376 * 298.24193 * 11 10 9 26 26 C 1.53031 * 109.51550 * 61.76289 * 25 11 10 27 27 N 1.40212 * 106.82316 * 359.64449 * 7 6 5 28 28 N 1.28755 * 108.38755 * 0.22866 * 27 7 6 29 29 H 1.09004 * 109.46909 * 299.99895 * 1 2 3 30 30 H 1.08997 * 109.47229 * 59.99672 * 1 2 3 31 31 H 1.08993 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.08003 * 126.58000 * 0.05292 * 6 5 3 33 33 H 1.08997 * 109.52252 * 204.83237 * 8 7 6 34 34 H 1.09004 * 109.50416 * 62.49907 * 9 8 7 35 35 H 1.08997 * 109.50495 * 302.38341 * 9 8 7 36 36 H 1.09000 * 109.46374 * 179.19703 * 10 9 8 37 37 H 1.08998 * 109.46279 * 299.17611 * 10 9 8 38 38 H 1.09002 * 109.47457 * 54.09874 * 12 11 10 39 39 H 1.09003 * 109.46911 * 174.09322 * 12 11 10 40 40 H 1.08994 * 109.46962 * 184.85808 * 15 13 12 41 41 H 1.08997 * 109.47032 * 304.86568 * 15 13 12 42 42 H 1.09001 * 109.46508 * 64.85821 * 15 13 12 43 43 H 1.08996 * 109.46820 * 304.99836 * 16 13 12 44 44 H 1.09000 * 109.46905 * 64.99753 * 16 13 12 45 45 H 0.97005 * 120.00076 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.47342 * 301.74052 * 25 11 10 47 47 H 1.09000 * 109.45202 * 181.76678 * 25 11 10 48 48 H 1.08998 * 109.50185 * 180.87419 * 26 25 11 49 49 H 1.09000 * 109.51042 * 60.75258 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5356 1.2778 0.0006 6 6 4.2755 2.4268 0.0054 7 7 5.5715 2.0566 0.0000 8 6 6.7343 2.9478 0.0004 9 6 7.0636 3.3586 1.4383 10 6 8.2403 4.3370 1.4273 11 7 7.8881 5.5189 0.6301 12 6 8.9401 6.5409 0.7108 13 6 9.0234 7.0752 2.1420 14 1 9.2042 6.2481 2.8286 15 6 7.7062 7.7627 2.5072 16 6 10.1701 8.0830 2.2443 17 6 10.3312 8.5169 3.6785 18 1 9.6809 8.1138 4.4408 19 6 11.3092 9.4276 4.0175 20 7 11.4500 9.8058 5.2691 21 14 12.4352 10.1231 2.6992 22 1 11.8319 11.3563 2.1332 23 1 13.7556 10.4471 3.2966 24 1 12.6131 9.1188 1.6199 25 6 7.6140 5.1551 -0.7660 26 6 6.4186 4.2012 -0.8205 27 7 5.5931 0.6546 0.0002 28 7 4.3777 0.2298 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8949 3.4375 0.0102 33 1 7.5893 2.4312 -0.4357 34 1 7.3308 2.4745 2.0172 35 1 6.1946 3.8394 1.8875 36 1 8.4681 4.6425 2.4485 37 1 9.1126 3.8510 0.9905 38 1 9.8971 6.1002 0.4311 39 1 8.7045 7.3594 0.0305 40 1 7.7954 8.2180 3.4935 41 1 7.4821 8.5335 1.7699 42 1 6.9029 7.0260 2.5183 43 1 11.0938 7.6184 1.8993 44 1 9.9468 8.9515 1.6248 45 1 12.1378 10.4468 5.5077 46 1 8.4893 4.6652 -1.1925 47 1 7.3869 6.0549 -1.3377 48 1 6.2250 3.9191 -1.8554 49 1 5.5394 4.6953 -0.4069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:54 Heat of formation + Delta-G solvation = -14.605468 kcal Electronic energy + Delta-G solvation = -28789.344715 eV Core-core repulsion = 24752.664823 eV Total energy + Delta-G solvation = -4036.679891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.45873 -41.23550 -40.31436 -37.60445 -37.56600 -35.67478 -34.20022 -32.51750 -32.13972 -31.92043 -29.40190 -28.76438 -27.42411 -25.72820 -25.02258 -24.32346 -23.96294 -22.75773 -22.01219 -20.77493 -20.41476 -19.41222 -18.91164 -18.17463 -17.66760 -17.52477 -16.77868 -16.72420 -16.13095 -16.05622 -15.83047 -15.72738 -15.18897 -14.90608 -14.85706 -14.69048 -14.59582 -14.20608 -14.04948 -13.51997 -13.46475 -13.31498 -13.13883 -12.94645 -12.77159 -12.63316 -12.56636 -12.45540 -12.25123 -12.18821 -12.12841 -11.89809 -11.82759 -11.69312 -11.68518 -11.40771 -11.19996 -11.11816 -10.91978 -10.71664 -10.50969 -9.20770 -8.24318 -6.26436 -0.04587 0.33159 0.84932 1.37232 1.38828 1.50067 1.62444 1.85057 2.38918 2.90852 3.05832 3.11311 3.20372 3.51893 3.65411 3.74023 3.81974 3.97350 4.11733 4.18082 4.20328 4.29988 4.33538 4.35384 4.36909 4.45666 4.52865 4.56088 4.65030 4.73564 4.75558 4.85269 4.90638 4.94519 4.97876 5.01330 5.04836 5.13460 5.18401 5.19556 5.33579 5.45323 5.46793 5.59762 5.74769 5.76816 6.09736 6.23175 6.37384 6.47369 6.81950 6.83706 7.37124 8.92419 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.001907 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.691659 B =14676.138221 C =15010.333671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.561 3.439 4 O -0.521 6.521 5 C -0.115 4.115 6 C 0.126 3.874 7 N -0.338 5.338 8 C 0.149 3.851 9 C -0.117 4.117 10 C 0.057 3.943 11 N -0.540 5.540 12 C 0.072 3.928 13 C -0.070 4.070 14 H 0.050 0.950 15 C -0.114 4.114 16 C -0.007 4.007 17 C -0.516 4.516 18 H 0.033 0.967 19 C -0.001 4.001 20 N -0.955 5.955 21 Si 0.948 3.052 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.244 1.244 25 C 0.059 3.941 26 C -0.119 4.119 27 N -0.082 5.082 28 N -0.208 5.208 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.236 0.764 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.082 0.918 40 H 0.022 0.978 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.015 0.985 44 H 0.018 0.982 45 H 0.263 0.737 46 H 0.045 0.955 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.921 -17.351 -17.806 30.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.404 3.596 4 O -0.410 6.410 5 C -0.252 4.252 6 C -0.033 4.033 7 N -0.121 5.121 8 C 0.049 3.951 9 C -0.156 4.156 10 C -0.071 4.071 11 N -0.265 5.265 12 C -0.056 4.056 13 C -0.089 4.089 14 H 0.068 0.932 15 C -0.171 4.171 16 C -0.045 4.045 17 C -0.555 4.555 18 H 0.051 0.949 19 C -0.197 4.197 20 N -0.597 5.597 21 Si 0.772 3.228 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.168 1.168 25 C -0.069 4.069 26 C -0.158 4.158 27 N -0.062 5.062 28 N -0.082 5.082 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.252 0.748 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.567 -18.027 -17.525 30.109 hybrid contribution 0.794 1.161 0.128 1.413 sum -15.773 -16.865 -17.396 28.911 Atomic orbital electron populations 1.23669 0.73639 1.06031 1.03117 1.86631 1.25615 1.31266 1.83406 1.19476 0.86257 0.81908 0.71979 1.90878 1.66027 1.36359 1.47688 1.20405 0.92634 0.90317 1.21851 1.23743 0.83419 1.01897 0.94223 1.50938 1.06934 1.07186 1.47016 1.22060 0.84784 0.89333 0.98894 1.21953 1.00072 0.99312 0.94245 1.22039 0.95642 0.89990 0.99471 1.61915 1.43226 1.10285 1.11088 1.22061 0.92167 0.94529 0.96829 1.20929 0.95390 0.97057 0.95521 0.93178 1.21475 0.96530 0.99542 0.99600 1.19571 0.95114 0.95360 0.94491 1.21472 1.15834 1.23970 0.94189 0.94870 1.26025 0.99262 0.96944 0.97498 1.70082 1.35466 1.34604 1.19518 0.85685 0.77782 0.79538 0.79768 1.19372 1.21549 1.16781 1.22084 0.96610 0.99437 0.88755 1.22049 1.00548 0.92445 1.00778 1.82048 1.13274 0.87774 1.23087 1.74757 0.97166 1.26780 1.09497 0.91382 0.91179 0.85036 0.74764 0.86045 0.90431 0.90104 0.90702 0.93787 0.94904 0.89956 0.95917 0.93414 0.91749 0.96657 0.96395 0.92806 0.93656 0.88466 0.88378 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.35 -6.88 10.57 -56.63 -0.60 -7.48 16 3 C 0.56 11.86 7.96 70.23 0.56 12.42 16 4 O -0.52 -12.06 16.65 19.77 0.33 -11.73 16 5 C -0.11 -2.37 7.02 40.78 0.29 -2.08 16 6 C 0.13 1.91 10.40 83.87 0.87 2.78 16 7 N -0.34 -5.43 3.55 -326.13 -1.16 -6.58 16 8 C 0.15 1.83 3.30 45.07 0.15 1.98 16 9 C -0.12 -1.76 5.70 30.65 0.17 -1.59 16 10 C 0.06 1.07 5.30 86.33 0.46 1.53 16 11 N -0.54 -10.35 4.12 -896.36 -3.69 -14.04 16 12 C 0.07 1.80 4.37 86.30 0.38 2.18 16 13 C -0.07 -2.44 2.24 -10.79 -0.02 -2.46 16 14 H 0.05 1.85 6.30 -2.39 -0.02 1.84 16 15 C -0.11 -3.93 8.89 71.98 0.64 -3.29 16 16 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 17 C -0.52 -28.84 8.89 25.60 0.23 -28.62 16 18 H 0.03 2.06 7.32 -2.91 -0.02 2.04 16 19 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 20 N -0.96 -59.71 13.96 21.45 0.30 -59.41 16 21 Si 0.95 43.46 27.47 68.60 1.88 45.34 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 25 C 0.06 0.74 5.46 86.32 0.47 1.22 16 26 C -0.12 -1.10 5.08 30.64 0.16 -0.94 16 27 N -0.08 -1.83 13.78 37.02 0.51 -1.32 16 28 N -0.21 -5.04 12.39 -50.04 -0.62 -5.66 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.24 2.04 7.28 -2.91 -0.02 2.02 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.76 6.16 -2.39 -0.01 1.75 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.08 1.93 7.98 -2.39 -0.02 1.92 16 40 H 0.02 0.92 6.82 -2.39 -0.02 0.91 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.91 7.84 -2.39 -0.02 1.89 16 43 H 0.02 0.66 7.20 -2.39 -0.02 0.64 16 44 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 45 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 46 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.10 1.10 8.01 -2.39 -0.02 1.08 16 48 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.09 0.80 7.11 -2.39 -0.02 0.78 16 Total: -1.00 -72.87 394.84 3.95 -68.92 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.88 Total: 7.18 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 6.11 Total: -15.21 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.66 Total: -87.02 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.27 Total: -19.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -72.87 3.95 -68.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.310 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds