Wall clock time and date at job start Tue Mar 31 2020 20:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 10 10 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 11 11 C 1.34775 * 120.00290 * 275.00553 * 10 2 1 12 12 O 1.21366 * 120.00204 * 0.02562 * 11 10 2 13 13 C 1.49314 * 119.99841 * 179.97438 * 11 10 2 14 14 O 1.21403 * 120.00115 * 359.97438 * 13 11 10 15 15 N 1.34775 * 119.99841 * 179.97438 * 13 11 10 16 16 C 1.40292 * 120.00068 * 180.02562 * 15 13 11 17 17 C 1.40724 * 126.09946 * 359.68654 * 16 15 13 18 18 N 1.30875 * 108.37578 * 179.85546 * 17 16 15 19 19 N 1.40065 * 108.43720 * 0.40897 * 18 17 16 20 20 C 1.37292 * 126.05503 * 179.74340 * 19 18 17 21 21 H 1.07998 * 119.99597 * 180.02562 * 20 19 18 22 22 C 1.39008 * 120.00130 * 359.97438 * 20 19 18 23 23 N 1.31279 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47460 * 60.00159 * 24 22 20 26 26 H 1.48502 * 109.46951 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.46942 * 299.99949 * 24 22 20 28 28 C 1.35790 * 126.10171 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 31 31 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 37 37 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46870 * 299.99783 * 7 6 5 39 39 H 1.09002 * 109.47508 * 59.99571 * 8 6 5 40 40 H 1.09000 * 109.47437 * 180.02562 * 8 6 5 41 41 H 1.09001 * 109.47109 * 299.99380 * 8 6 5 42 42 H 1.09000 * 109.46986 * 60.00203 * 9 6 5 43 43 H 1.08993 * 109.47662 * 180.02562 * 9 6 5 44 44 H 1.09002 * 109.47075 * 300.00932 * 9 6 5 45 45 H 0.97003 * 119.99849 * 95.00425 * 10 2 1 46 46 H 0.97003 * 119.99861 * 359.97438 * 15 13 11 47 47 H 1.08007 * 125.80934 * 359.97438 * 17 16 15 48 48 H 0.96999 * 120.00057 * 179.97438 * 23 22 20 49 49 H 1.07998 * 126.25126 * 359.92901 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0749 -1.3338 -2.5631 7 6 3.4649 -0.6882 -3.8089 8 6 5.5998 -1.2263 -2.6272 9 6 3.6702 -2.8081 -2.5025 10 7 2.0183 -0.6905 1.1962 11 6 2.1469 -0.0182 2.3572 12 8 1.8578 1.1593 2.4118 13 6 2.6441 -0.7222 3.5765 14 8 2.9320 -1.9003 3.5222 15 7 2.7732 -0.0497 4.7373 16 6 3.2408 -0.7110 5.8828 17 6 3.6044 -2.0679 5.9665 18 7 3.9923 -2.3163 7.1915 19 7 3.8838 -1.1363 7.9384 20 6 4.1920 -0.9906 9.2683 21 1 4.0703 -0.0310 9.7487 22 6 4.6596 -2.0783 9.9967 23 7 4.8070 -3.2448 9.4128 24 14 5.0782 -1.8801 11.8063 25 1 3.8687 -1.4441 12.5494 26 1 5.5524 -3.1782 12.3497 27 1 6.1469 -0.8604 11.9583 28 6 3.4172 -0.1575 7.1102 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7531 0.3620 -3.8521 37 1 3.8286 -1.2014 -4.6992 38 1 2.3786 -0.7652 -3.7630 39 1 6.0341 -1.6864 -1.7396 40 1 5.9632 -1.7393 -3.5176 41 1 5.8885 -0.1761 -2.6702 42 1 2.5839 -2.8851 -2.4567 43 1 4.0339 -3.3216 -3.3925 44 1 4.1048 -3.2679 -1.6149 45 1 2.2490 -1.6317 1.1527 46 1 2.5435 0.8917 4.7805 47 1 3.5709 -2.7822 5.1570 48 1 5.1336 -4.0037 9.9209 49 1 3.2245 0.8700 7.3811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746411521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:08 Heat of formation + Delta-G solvation = -12.418223 kcal Electronic energy + Delta-G solvation = -28749.229294 eV Core-core repulsion = 24712.644249 eV Total energy + Delta-G solvation = -4036.585045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.56064 -39.61276 -38.64054 -37.84266 -35.96987 -34.33673 -33.18734 -31.75699 -30.31969 -29.40260 -28.03746 -27.58654 -27.54836 -25.55586 -24.49904 -23.68976 -21.31002 -20.87738 -20.33505 -19.46255 -18.87329 -18.12536 -17.45443 -16.66221 -15.70933 -15.52569 -15.37316 -15.22967 -15.02228 -14.85484 -14.55279 -14.08696 -13.94023 -13.82948 -13.53667 -13.48738 -13.13980 -12.98158 -12.73580 -12.61338 -12.33100 -12.20296 -11.95589 -11.83541 -11.73350 -11.56291 -11.46733 -11.27353 -11.26423 -11.16143 -10.86001 -10.74949 -10.69182 -10.59493 -10.58146 -10.27943 -9.26675 -9.21883 -9.09692 -8.87131 -8.12747 -6.77450 -6.60219 -4.27548 1.68414 2.63528 2.94574 3.03660 3.07317 3.34406 3.72645 3.76346 3.99318 4.25819 4.37663 4.48481 4.52892 4.61268 4.75035 4.87069 4.89676 4.98304 5.03483 5.16898 5.25781 5.31740 5.35775 5.41848 5.44563 5.51048 5.51277 5.62930 5.65591 5.69061 5.79918 5.82301 5.88009 5.99467 6.05134 6.13262 6.15915 6.20366 6.32032 6.36424 6.76519 6.88782 6.93191 7.16566 7.26404 7.77552 7.88268 8.12194 8.18893 8.49729 8.70089 9.31448 9.60119 10.35523 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.002048 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.854835 B =13667.453676 C =14470.039483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.130 4.130 5 C -0.112 4.112 6 C -0.070 4.070 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.145 4.145 10 N -0.698 5.698 11 C 0.516 3.484 12 O -0.530 6.530 13 C 0.482 3.518 14 O -0.524 6.524 15 N -0.584 5.584 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.078 4.078 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.412 0.588 46 H 0.409 0.591 47 H 0.178 0.822 48 H 0.276 0.724 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 4.886 -21.817 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.168 4.168 5 C -0.149 4.149 6 C -0.070 4.070 7 C -0.200 4.200 8 C -0.200 4.200 9 C -0.202 4.202 10 N -0.352 5.352 11 C 0.297 3.703 12 O -0.406 6.406 13 C 0.263 3.737 14 O -0.401 6.401 15 N -0.226 5.226 16 C -0.175 4.175 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.248 0.752 46 H 0.244 0.756 47 H 0.194 0.806 48 H 0.087 0.913 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.672 3.766 -20.968 21.618 hybrid contribution -0.169 0.844 0.214 0.887 sum -3.841 4.610 -20.755 21.604 Atomic orbital electron populations 1.22191 0.95029 1.02412 1.02684 1.21093 0.94130 0.97678 0.83555 0.89188 1.22054 0.96389 1.01474 0.96883 1.21682 0.94879 1.00745 0.97630 1.20550 0.95551 0.95674 0.95253 1.21932 1.00770 1.00424 0.96910 1.21877 0.94669 1.01676 1.01784 1.21950 1.01442 0.95020 1.01835 1.45836 1.65705 1.14933 1.08723 1.20283 0.78399 0.86809 0.84790 1.90723 1.49198 1.15605 1.85063 1.19707 0.82482 0.87290 0.84195 1.90651 1.49944 1.15214 1.84296 1.42155 1.60140 1.13225 1.07126 1.17255 1.19957 0.93987 0.86288 1.24144 1.05224 0.94153 0.96735 1.78260 1.25019 1.04236 1.01628 1.44554 1.34221 1.04706 1.07017 1.19873 1.45478 0.98830 0.81248 0.86491 1.25666 0.95730 0.94593 1.01157 1.70195 1.32577 1.00048 1.36582 0.85870 0.79450 0.78449 0.80259 1.19096 1.20102 1.19096 1.21305 1.15494 0.95671 0.90451 0.92244 0.91862 0.91540 0.89965 0.90783 0.91385 0.91814 0.92753 0.92935 0.92368 0.92467 0.92816 0.92762 0.92346 0.92928 0.92390 0.75166 0.75625 0.80573 0.91305 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.28 2.57 -67.94 -0.17 1.10 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -0.90 4.05 -26.74 -0.11 -1.00 16 5 C -0.11 -0.87 4.16 -26.73 -0.11 -0.98 16 6 C -0.07 -0.49 0.80 -154.51 -0.12 -0.61 16 7 C -0.14 -0.87 8.12 37.16 0.30 -0.56 16 8 C -0.14 -1.05 8.47 37.16 0.31 -0.73 16 9 C -0.15 -1.00 8.12 37.16 0.30 -0.70 16 10 N -0.70 -8.06 4.52 -54.29 -0.25 -8.30 16 11 C 0.52 7.74 7.85 -11.65 -0.09 7.64 16 12 O -0.53 -8.67 16.14 5.48 0.09 -8.58 16 13 C 0.48 8.72 7.85 -11.65 -0.09 8.63 16 14 O -0.52 -10.54 13.62 5.45 0.07 -10.46 16 15 N -0.58 -11.07 5.45 -10.45 -0.06 -11.13 16 16 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 17 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 19 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 20 C -0.32 -8.43 10.25 -14.82 -0.15 -8.59 16 21 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.19 11.81 55.50 0.66 -20.54 16 24 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.08 -1.84 11.50 -16.38 -0.19 -2.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.47 6.43 -51.93 -0.33 0.14 16 33 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 34 H 0.07 0.63 7.75 -51.93 -0.40 0.22 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.41 4.49 8.07 -40.82 -0.33 4.16 16 46 H 0.41 6.71 8.29 -40.82 -0.34 6.38 16 47 H 0.18 4.44 5.92 -52.48 -0.31 4.13 16 48 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -31.89 400.08 -6.56 -38.45 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.73 Total: 12.68 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.63 Total: -0.86 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.63 Total: -50.95 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.89 -6.56 -38.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.028 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds