Wall clock time and date at job start Tue Mar 31 2020 20:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 10 10 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 11 11 C 1.34775 * 120.00290 * 275.00553 * 10 2 1 12 12 O 1.21366 * 120.00204 * 0.02562 * 11 10 2 13 13 C 1.49314 * 119.99841 * 179.97438 * 11 10 2 14 14 O 1.21403 * 120.00115 * 359.97438 * 13 11 10 15 15 N 1.34775 * 119.99841 * 179.97438 * 13 11 10 16 16 C 1.40292 * 120.00068 * 180.02562 * 15 13 11 17 17 C 1.40724 * 126.09946 * 359.68654 * 16 15 13 18 18 N 1.30875 * 108.37578 * 179.85546 * 17 16 15 19 19 N 1.40065 * 108.43720 * 0.40897 * 18 17 16 20 20 C 1.37292 * 126.05503 * 179.74340 * 19 18 17 21 21 H 1.07998 * 119.99597 * 180.02562 * 20 19 18 22 22 C 1.39008 * 120.00130 * 359.97438 * 20 19 18 23 23 N 1.31279 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47460 * 60.00159 * 24 22 20 26 26 H 1.48502 * 109.46951 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.46942 * 299.99949 * 24 22 20 28 28 C 1.35790 * 126.10171 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 31 31 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 37 37 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46870 * 299.99783 * 7 6 5 39 39 H 1.09002 * 109.47508 * 59.99571 * 8 6 5 40 40 H 1.09000 * 109.47437 * 180.02562 * 8 6 5 41 41 H 1.09001 * 109.47109 * 299.99380 * 8 6 5 42 42 H 1.09000 * 109.46986 * 60.00203 * 9 6 5 43 43 H 1.08993 * 109.47662 * 180.02562 * 9 6 5 44 44 H 1.09002 * 109.47075 * 300.00932 * 9 6 5 45 45 H 0.97003 * 119.99849 * 95.00425 * 10 2 1 46 46 H 0.97003 * 119.99861 * 359.97438 * 15 13 11 47 47 H 1.08007 * 125.80934 * 359.97438 * 17 16 15 48 48 H 0.96999 * 120.00057 * 179.97438 * 23 22 20 49 49 H 1.07998 * 126.25126 * 359.92901 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0749 -1.3338 -2.5631 7 6 3.4649 -0.6882 -3.8089 8 6 5.5998 -1.2263 -2.6272 9 6 3.6702 -2.8081 -2.5025 10 7 2.0183 -0.6905 1.1962 11 6 2.1469 -0.0182 2.3572 12 8 1.8578 1.1593 2.4118 13 6 2.6441 -0.7222 3.5765 14 8 2.9320 -1.9003 3.5222 15 7 2.7732 -0.0497 4.7373 16 6 3.2408 -0.7110 5.8828 17 6 3.6044 -2.0679 5.9665 18 7 3.9923 -2.3163 7.1915 19 7 3.8838 -1.1363 7.9384 20 6 4.1920 -0.9906 9.2683 21 1 4.0703 -0.0310 9.7487 22 6 4.6596 -2.0783 9.9967 23 7 4.8070 -3.2448 9.4128 24 14 5.0782 -1.8801 11.8063 25 1 3.8687 -1.4441 12.5494 26 1 5.5524 -3.1782 12.3497 27 1 6.1469 -0.8604 11.9583 28 6 3.4172 -0.1575 7.1102 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7531 0.3620 -3.8521 37 1 3.8286 -1.2014 -4.6992 38 1 2.3786 -0.7652 -3.7630 39 1 6.0341 -1.6864 -1.7396 40 1 5.9632 -1.7393 -3.5176 41 1 5.8885 -0.1761 -2.6702 42 1 2.5839 -2.8851 -2.4567 43 1 4.0339 -3.3216 -3.3925 44 1 4.1048 -3.2679 -1.6149 45 1 2.2490 -1.6317 1.1527 46 1 2.5435 0.8917 4.7805 47 1 3.5709 -2.7822 5.1570 48 1 5.1336 -4.0037 9.9209 49 1 3.2245 0.8700 7.3811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746411521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:07 Heat of formation + Delta-G solvation = -33.052509 kcal Electronic energy + Delta-G solvation = -28750.124064 eV Core-core repulsion = 24712.644249 eV Total energy + Delta-G solvation = -4037.479815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04086 -41.23514 -39.72614 -38.96169 -36.93806 -35.99044 -34.99293 -32.70077 -32.29164 -30.11121 -29.83416 -28.12094 -28.07664 -27.25979 -25.81850 -24.62928 -22.95633 -22.12694 -21.59391 -21.23557 -19.62583 -19.43450 -19.13907 -17.81963 -17.44903 -16.95941 -16.79346 -16.60648 -15.82755 -15.67864 -15.54601 -15.46320 -15.23452 -15.01496 -14.86027 -14.74691 -14.35657 -14.14616 -13.58068 -13.51236 -13.38432 -13.22648 -13.04914 -12.94333 -12.88706 -12.73244 -12.51465 -12.49184 -12.38874 -12.13483 -12.09274 -11.96218 -11.80996 -11.32927 -11.28709 -11.22467 -11.05667 -10.87607 -10.54878 -10.25070 -10.14399 -8.62533 -8.49019 -6.26847 0.30730 1.30575 1.33324 1.42638 1.57030 1.73115 2.05376 2.12423 2.54026 2.60065 2.95325 3.07380 3.52926 3.63527 3.89372 3.95192 4.12327 4.22362 4.27242 4.39244 4.51462 4.52155 4.64777 4.72528 4.77055 4.83347 4.84883 4.89025 4.95199 4.97076 4.97474 5.00132 5.11266 5.11919 5.15587 5.21606 5.25446 5.28098 5.30426 5.33355 5.40471 5.45539 5.58758 5.61976 5.90313 6.04110 6.25672 6.50148 6.67430 6.83888 7.08271 7.40896 7.62434 8.49973 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.002048 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.854835 B =13667.453676 C =14470.039483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.069 4.069 7 C -0.141 4.141 8 C -0.144 4.144 9 C -0.145 4.145 10 N -0.681 5.681 11 C 0.525 3.475 12 O -0.542 6.542 13 C 0.484 3.516 14 O -0.544 6.544 15 N -0.583 5.583 16 C -0.056 4.056 17 C -0.049 4.049 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.253 1.253 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.076 4.076 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.416 0.584 46 H 0.423 0.577 47 H 0.176 0.824 48 H 0.278 0.722 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 6.409 -22.920 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.198 4.198 8 C -0.202 4.202 9 C -0.202 4.202 10 N -0.334 5.334 11 C 0.305 3.695 12 O -0.420 6.420 13 C 0.266 3.734 14 O -0.422 6.422 15 N -0.228 5.228 16 C -0.163 4.163 17 C -0.224 4.224 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.177 1.177 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.227 4.227 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.253 0.747 46 H 0.260 0.740 47 H 0.192 0.808 48 H 0.088 0.912 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.657 5.312 -22.133 23.233 hybrid contribution 0.090 0.399 0.335 0.529 sum -4.568 5.711 -21.798 22.992 Atomic orbital electron populations 1.22169 0.94017 1.02949 1.02821 1.21336 0.94833 0.97282 0.83124 0.90052 1.22027 0.95578 1.01897 0.96306 1.21654 0.95547 1.00362 0.97294 1.20537 0.95174 0.95769 0.95407 1.21912 1.01317 1.00302 0.96265 1.21893 0.95211 1.01581 1.01473 1.21951 1.01977 0.94830 1.01464 1.45911 1.64051 1.15092 1.08350 1.19636 0.78848 0.86456 0.84581 1.90728 1.50260 1.15871 1.85126 1.20389 0.81085 0.87095 0.84858 1.90641 1.50340 1.16404 1.84796 1.42103 1.60544 1.13850 1.06323 1.17299 1.18332 0.93060 0.87569 1.24246 1.06224 0.95660 0.96270 1.78155 1.26704 1.06209 1.02866 1.44835 1.35516 1.04939 1.07792 1.20617 1.46158 1.00313 0.81382 0.84110 1.26894 0.94753 0.93771 1.06353 1.70369 1.34353 1.01240 1.38869 0.84640 0.79689 0.78463 0.73362 1.17745 1.20193 1.17760 1.22000 1.13818 0.96795 0.90053 0.91505 0.94049 0.89099 0.87748 0.89908 0.93289 0.92254 0.92744 0.92614 0.91327 0.93705 0.92214 0.92816 0.91403 0.92520 0.93610 0.74657 0.73979 0.80767 0.91224 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 71.98 0.68 -1.69 16 2 C 0.14 2.24 2.57 44.99 0.12 2.35 16 3 H 0.08 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.12 -1.35 4.05 30.59 0.12 -1.22 16 5 C -0.11 -1.57 4.16 30.59 0.13 -1.44 16 6 C -0.07 -0.85 0.80 -52.18 -0.04 -0.90 16 7 C -0.14 -1.36 8.12 71.98 0.58 -0.78 16 8 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 9 C -0.15 -1.78 8.12 71.98 0.58 -1.19 16 10 N -0.68 -14.89 4.52 -444.02 -2.01 -16.90 16 11 C 0.52 15.25 7.85 87.23 0.68 15.94 16 12 O -0.54 -17.09 16.14 -3.30 -0.05 -17.15 16 13 C 0.48 17.35 7.85 87.23 0.69 18.04 16 14 O -0.54 -22.09 13.62 -3.41 -0.05 -22.14 16 15 N -0.58 -21.80 5.45 -305.32 -1.66 -23.47 16 16 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 17 C -0.05 -2.61 10.85 85.44 0.93 -1.68 16 18 N -0.31 -18.34 10.39 -56.43 -0.59 -18.93 16 19 N -0.16 -9.01 3.73 -189.98 -0.71 -9.72 16 20 C -0.35 -18.61 10.25 84.02 0.86 -17.75 16 21 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 22 C -0.01 -0.29 5.50 84.96 0.47 0.18 16 23 N -0.82 -46.83 11.81 21.66 0.26 -46.57 16 24 Si 1.02 38.20 29.55 68.60 2.03 40.23 16 25 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 26 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 28 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.79 6.43 -2.39 -0.02 0.78 16 33 H 0.08 0.83 6.43 -2.39 -0.02 0.82 16 34 H 0.05 0.88 7.75 -2.39 -0.02 0.86 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.07 0.52 6.43 -2.39 -0.02 0.51 16 39 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.69 6.43 -2.39 -0.02 0.68 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.42 8.62 8.07 -92.71 -0.75 7.87 16 46 H 0.42 13.36 8.29 -92.71 -0.77 12.59 16 47 H 0.18 9.17 5.92 -2.91 -0.02 9.15 16 48 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.19 7.00 8.06 -2.91 -0.02 6.97 16 Total: -1.00 -71.57 400.08 4.31 -67.26 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -0.54 Total: 43.89 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 7.63 Total: 3.50 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.71 Total: -115.59 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.10 Total: -39.28 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -71.57 4.31 -67.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.211 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds