Wall clock time and date at job start Tue Mar 31 2020 20:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52995 * 109.47236 * 119.99637 * 2 1 3 5 5 C 1.52998 * 109.47525 * 185.00240 * 4 2 1 6 6 C 1.52995 * 109.47525 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47191 * 59.99961 * 6 5 4 8 8 C 1.52998 * 109.47206 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47163 * 299.99678 * 6 5 4 10 10 N 1.46501 * 109.47509 * 240.00009 * 2 1 3 11 11 C 1.34769 * 120.00313 * 84.99457 * 10 2 1 12 12 O 1.21366 * 119.99965 * 0.02562 * 11 10 2 13 13 C 1.49311 * 120.00061 * 180.02562 * 11 10 2 14 14 O 1.21397 * 119.99795 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.40291 * 119.99916 * 179.97438 * 15 13 11 17 17 C 1.40728 * 126.10043 * 359.97438 * 16 15 13 18 18 N 1.30869 * 108.37411 * 179.77351 * 17 16 15 19 19 N 1.40064 * 108.43837 * 0.38012 * 18 17 16 20 20 C 1.37301 * 126.05474 * 179.87893 * 19 18 17 21 21 H 1.08002 * 119.99622 * 179.68469 * 20 19 18 22 22 C 1.39003 * 119.99972 * 359.96620 * 20 19 18 23 23 N 1.31284 * 120.00043 * 359.72316 * 22 20 19 24 24 Si 1.86801 * 119.99884 * 179.72361 * 22 20 19 25 25 H 1.48504 * 109.46920 * 59.99981 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47038 * 299.99751 * 24 22 20 28 28 C 1.35786 * 126.10040 * 179.97438 * 16 15 13 29 29 H 1.09010 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47055 * 300.00148 * 1 2 3 31 31 H 1.08995 * 109.47197 * 60.00269 * 1 2 3 32 32 H 1.09004 * 109.47514 * 304.99972 * 4 2 1 33 33 H 1.09004 * 109.47471 * 65.00294 * 4 2 1 34 34 H 1.09004 * 109.47029 * 300.00379 * 5 4 2 35 35 H 1.09009 * 109.47151 * 59.99690 * 5 4 2 36 36 H 1.09005 * 109.47234 * 60.00272 * 7 6 5 37 37 H 1.08995 * 109.47288 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46878 * 300.00200 * 7 6 5 39 39 H 1.09001 * 109.47663 * 59.99951 * 8 6 5 40 40 H 1.09007 * 109.47505 * 180.02562 * 8 6 5 41 41 H 1.09005 * 109.47045 * 299.99621 * 8 6 5 42 42 H 1.09006 * 109.46684 * 60.00433 * 9 6 5 43 43 H 1.09003 * 109.46935 * 179.97438 * 9 6 5 44 44 H 1.08996 * 109.47360 * 300.00219 * 9 6 5 45 45 H 0.97001 * 119.99297 * 265.00255 * 10 2 1 46 46 H 0.97005 * 120.00098 * 0.02562 * 15 13 11 47 47 H 1.07994 * 125.80713 * 0.02562 * 17 16 15 48 48 H 0.97004 * 119.99619 * 180.02562 * 23 22 20 49 49 H 1.08006 * 126.25004 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3338 2.5633 7 6 3.6700 -2.8080 2.5028 8 6 5.5995 -1.2252 2.6281 9 6 3.4647 -0.6881 3.8091 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0184 -2.3571 12 8 1.8588 1.1593 -2.4116 13 6 2.6444 -0.7224 -3.5763 14 8 2.9332 -1.9002 -3.5217 15 7 2.7735 -0.0499 -4.7372 16 6 3.2412 -0.7113 -5.8826 17 6 3.6112 -2.0666 -5.9646 18 7 3.9894 -2.3175 -7.1920 19 7 3.8852 -1.1365 -7.9378 20 6 4.1930 -0.9909 -9.2680 21 1 4.0705 -0.0316 -9.7487 22 6 4.6567 -2.0797 -9.9972 23 7 4.8055 -3.2458 -9.4129 24 14 5.0681 -1.8834 -11.8088 25 1 6.1371 -0.8647 -11.9661 26 1 5.5390 -3.1825 -12.3530 27 1 3.8558 -1.4471 -12.5472 28 6 3.4177 -0.1579 -7.1100 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0727 0.4260 35 1 3.8532 0.4372 1.3573 36 1 4.1048 -3.2680 1.6153 37 1 4.0337 -3.3215 3.3928 38 1 2.5838 -2.8849 2.4569 39 1 5.8876 -0.1748 2.6715 40 1 5.9629 -1.7390 3.5182 41 1 6.0345 -1.6849 1.7407 42 1 2.3783 -0.7651 3.7632 43 1 3.8277 -1.2018 4.6993 44 1 3.7530 0.3621 3.8522 45 1 2.2491 -1.6318 -1.1525 46 1 2.5438 0.8915 -4.7805 47 1 3.5835 -2.7793 -5.1536 48 1 5.1295 -4.0054 -9.9218 49 1 3.2243 0.8695 -7.3811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746411522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:13 Heat of formation + Delta-G solvation = -12.411973 kcal Electronic energy + Delta-G solvation = -28749.275131 eV Core-core repulsion = 24712.690357 eV Total energy + Delta-G solvation = -4036.584774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56129 -39.61331 -38.64084 -37.84331 -35.96974 -34.33673 -33.18674 -31.75715 -30.31931 -29.40243 -28.03773 -27.58430 -27.55002 -25.55592 -24.49900 -23.68965 -21.31012 -20.87731 -20.33508 -19.46279 -18.87294 -18.12542 -17.45443 -16.66226 -15.70924 -15.52457 -15.37451 -15.22969 -15.02211 -14.85430 -14.55321 -14.08744 -13.93901 -13.82956 -13.53697 -13.48814 -13.13970 -12.98160 -12.73584 -12.61364 -12.33088 -12.20286 -11.95548 -11.83521 -11.73300 -11.56309 -11.46705 -11.27375 -11.26403 -11.16175 -10.86000 -10.74849 -10.69236 -10.59497 -10.58129 -10.27953 -9.26665 -9.21912 -9.09687 -8.87147 -8.12760 -6.77452 -6.60199 -4.27552 1.68420 2.63529 2.94582 3.03645 3.07326 3.34409 3.72650 3.76347 3.99320 4.25825 4.37646 4.48481 4.52870 4.61264 4.75043 4.87066 4.89657 4.98295 5.03490 5.16865 5.25806 5.31762 5.35742 5.41830 5.44540 5.50991 5.51291 5.62933 5.65552 5.69069 5.79899 5.82285 5.87993 5.99448 6.05114 6.13245 6.15913 6.20310 6.32007 6.36423 6.76511 6.88781 6.93185 7.16581 7.26418 7.77557 7.88268 8.12191 8.18887 8.49736 8.70096 9.31424 9.60119 10.35531 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.002048 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.821197 B =13668.966498 C =14470.957710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.130 4.130 5 C -0.112 4.112 6 C -0.070 4.070 7 C -0.145 4.145 8 C -0.143 4.143 9 C -0.143 4.143 10 N -0.698 5.698 11 C 0.516 3.484 12 O -0.530 6.530 13 C 0.482 3.518 14 O -0.523 6.523 15 N -0.584 5.584 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.078 4.078 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.412 0.588 46 H 0.409 0.591 47 H 0.178 0.822 48 H 0.276 0.724 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 4.890 21.819 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.168 4.168 5 C -0.149 4.149 6 C -0.070 4.070 7 C -0.202 4.202 8 C -0.200 4.200 9 C -0.200 4.200 10 N -0.352 5.352 11 C 0.297 3.703 12 O -0.406 6.406 13 C 0.263 3.737 14 O -0.401 6.401 15 N -0.227 5.227 16 C -0.175 4.175 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.248 0.752 46 H 0.244 0.756 47 H 0.194 0.806 48 H 0.087 0.913 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.676 3.768 20.969 21.620 hybrid contribution -0.172 0.842 -0.214 0.886 sum -3.848 4.611 20.755 21.606 Atomic orbital electron populations 1.22192 0.95028 1.02412 1.02685 1.21094 0.94129 0.97678 0.83555 0.89186 1.22056 0.96389 1.01473 0.96883 1.21683 0.94880 1.00746 0.97630 1.20548 0.95552 0.95675 0.95252 1.21949 1.01442 0.95017 1.01836 1.21878 0.94669 1.01670 1.01789 1.21935 1.00771 1.00421 0.96914 1.45835 1.65701 1.14935 1.08723 1.20281 0.78396 0.86814 0.84792 1.90723 1.49213 1.15589 1.85067 1.19705 0.82485 0.87286 0.84195 1.90650 1.49931 1.15236 1.84285 1.42156 1.60138 1.13224 1.07132 1.17256 1.19874 0.94097 0.86263 1.24141 1.05242 0.94196 0.96675 1.78257 1.25193 1.04123 1.01563 1.44556 1.34242 1.04632 1.07076 1.19874 1.45523 0.98798 0.81231 0.86491 1.25666 0.95727 0.94592 1.01164 1.70200 1.32596 1.00038 1.36573 0.85872 0.79450 0.78449 0.80262 1.19091 1.20100 1.19099 1.21306 1.15381 0.95710 0.90518 0.92242 0.91538 0.91864 0.89964 0.90783 0.91386 0.91814 0.92390 0.92929 0.92342 0.92752 0.92816 0.92477 0.92376 0.92935 0.92746 0.75166 0.75624 0.80575 0.91308 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.28 2.57 -67.93 -0.17 1.10 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -0.90 4.05 -26.73 -0.11 -1.00 16 5 C -0.11 -0.87 4.16 -26.73 -0.11 -0.98 16 6 C -0.07 -0.49 0.80 -154.51 -0.12 -0.61 16 7 C -0.15 -1.00 8.12 37.16 0.30 -0.70 16 8 C -0.14 -1.05 8.47 37.16 0.31 -0.73 16 9 C -0.14 -0.87 8.12 37.16 0.30 -0.57 16 10 N -0.70 -8.06 4.52 -54.29 -0.25 -8.30 16 11 C 0.52 7.73 7.85 -11.65 -0.09 7.64 16 12 O -0.53 -8.67 16.14 5.48 0.09 -8.58 16 13 C 0.48 8.72 7.85 -11.65 -0.09 8.63 16 14 O -0.52 -10.54 13.62 5.46 0.07 -10.46 16 15 N -0.58 -11.07 5.45 -10.45 -0.06 -11.13 16 16 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 17 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 19 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 20 C -0.32 -8.43 10.25 -14.82 -0.15 -8.59 16 21 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.19 11.81 55.50 0.66 -20.54 16 24 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.47 6.43 -51.93 -0.33 0.14 16 33 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 34 H 0.07 0.63 7.75 -51.93 -0.40 0.22 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.41 4.49 8.07 -40.82 -0.33 4.16 16 46 H 0.41 6.71 8.29 -40.82 -0.34 6.38 16 47 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 48 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -31.89 400.09 -6.56 -38.45 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.73 Total: 12.68 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.63 Total: -0.85 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.63 Total: -50.95 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.89 -6.56 -38.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.036 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds