Wall clock time and date at job start Tue Mar 31 2020 20:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52995 * 109.47236 * 119.99637 * 2 1 3 5 5 C 1.52998 * 109.47525 * 185.00240 * 4 2 1 6 6 C 1.52995 * 109.47525 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47191 * 59.99961 * 6 5 4 8 8 C 1.52998 * 109.47206 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47163 * 299.99678 * 6 5 4 10 10 N 1.46501 * 109.47509 * 240.00009 * 2 1 3 11 11 C 1.34769 * 120.00313 * 84.99457 * 10 2 1 12 12 O 1.21366 * 119.99965 * 0.02562 * 11 10 2 13 13 C 1.49311 * 120.00061 * 180.02562 * 11 10 2 14 14 O 1.21397 * 119.99795 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.40291 * 119.99916 * 179.97438 * 15 13 11 17 17 C 1.40728 * 126.10043 * 359.97438 * 16 15 13 18 18 N 1.30869 * 108.37411 * 179.77351 * 17 16 15 19 19 N 1.40064 * 108.43837 * 0.38012 * 18 17 16 20 20 C 1.37301 * 126.05474 * 179.87893 * 19 18 17 21 21 H 1.08002 * 119.99622 * 179.68469 * 20 19 18 22 22 C 1.39003 * 119.99972 * 359.96620 * 20 19 18 23 23 N 1.31284 * 120.00043 * 359.72316 * 22 20 19 24 24 Si 1.86801 * 119.99884 * 179.72361 * 22 20 19 25 25 H 1.48504 * 109.46920 * 59.99981 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47038 * 299.99751 * 24 22 20 28 28 C 1.35786 * 126.10040 * 179.97438 * 16 15 13 29 29 H 1.09010 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47055 * 300.00148 * 1 2 3 31 31 H 1.08995 * 109.47197 * 60.00269 * 1 2 3 32 32 H 1.09004 * 109.47514 * 304.99972 * 4 2 1 33 33 H 1.09004 * 109.47471 * 65.00294 * 4 2 1 34 34 H 1.09004 * 109.47029 * 300.00379 * 5 4 2 35 35 H 1.09009 * 109.47151 * 59.99690 * 5 4 2 36 36 H 1.09005 * 109.47234 * 60.00272 * 7 6 5 37 37 H 1.08995 * 109.47288 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46878 * 300.00200 * 7 6 5 39 39 H 1.09001 * 109.47663 * 59.99951 * 8 6 5 40 40 H 1.09007 * 109.47505 * 180.02562 * 8 6 5 41 41 H 1.09005 * 109.47045 * 299.99621 * 8 6 5 42 42 H 1.09006 * 109.46684 * 60.00433 * 9 6 5 43 43 H 1.09003 * 109.46935 * 179.97438 * 9 6 5 44 44 H 1.08996 * 109.47360 * 300.00219 * 9 6 5 45 45 H 0.97001 * 119.99297 * 265.00255 * 10 2 1 46 46 H 0.97005 * 120.00098 * 0.02562 * 15 13 11 47 47 H 1.07994 * 125.80713 * 0.02562 * 17 16 15 48 48 H 0.97004 * 119.99619 * 180.02562 * 23 22 20 49 49 H 1.08006 * 126.25004 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3338 2.5633 7 6 3.6700 -2.8080 2.5028 8 6 5.5995 -1.2252 2.6281 9 6 3.4647 -0.6881 3.8091 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0184 -2.3571 12 8 1.8588 1.1593 -2.4116 13 6 2.6444 -0.7224 -3.5763 14 8 2.9332 -1.9002 -3.5217 15 7 2.7735 -0.0499 -4.7372 16 6 3.2412 -0.7113 -5.8826 17 6 3.6112 -2.0666 -5.9646 18 7 3.9894 -2.3175 -7.1920 19 7 3.8852 -1.1365 -7.9378 20 6 4.1930 -0.9909 -9.2680 21 1 4.0705 -0.0316 -9.7487 22 6 4.6567 -2.0797 -9.9972 23 7 4.8055 -3.2458 -9.4129 24 14 5.0681 -1.8834 -11.8088 25 1 6.1371 -0.8647 -11.9661 26 1 5.5390 -3.1825 -12.3530 27 1 3.8558 -1.4471 -12.5472 28 6 3.4177 -0.1579 -7.1100 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0727 0.4260 35 1 3.8532 0.4372 1.3573 36 1 4.1048 -3.2680 1.6153 37 1 4.0337 -3.3215 3.3928 38 1 2.5838 -2.8849 2.4569 39 1 5.8876 -0.1748 2.6715 40 1 5.9629 -1.7390 3.5182 41 1 6.0345 -1.6849 1.7407 42 1 2.3783 -0.7651 3.7632 43 1 3.8277 -1.2018 4.6993 44 1 3.7530 0.3621 3.8522 45 1 2.2491 -1.6318 -1.1525 46 1 2.5438 0.8915 -4.7805 47 1 3.5835 -2.7793 -5.1536 48 1 5.1295 -4.0054 -9.9218 49 1 3.2243 0.8695 -7.3811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746411522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:12 Heat of formation + Delta-G solvation = -33.047825 kcal Electronic energy + Delta-G solvation = -28750.169969 eV Core-core repulsion = 24712.690357 eV Total energy + Delta-G solvation = -4037.479612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04155 -41.23572 -39.72656 -38.96193 -36.93798 -35.99023 -34.99250 -32.70089 -32.29131 -30.11100 -29.83427 -28.12166 -28.07526 -27.25983 -25.81865 -24.62897 -22.95647 -22.12671 -21.59392 -21.23574 -19.62586 -19.43412 -19.13909 -17.81972 -17.44877 -16.95904 -16.79304 -16.60746 -15.82838 -15.67693 -15.54521 -15.46434 -15.23414 -15.01574 -14.86078 -14.74650 -14.35626 -14.14637 -13.58065 -13.51192 -13.38444 -13.22659 -13.04888 -12.94319 -12.88686 -12.73245 -12.51373 -12.49240 -12.38853 -12.13470 -12.09246 -11.96221 -11.81035 -11.32796 -11.28791 -11.22463 -11.05647 -10.87621 -10.54895 -10.25087 -10.14406 -8.62527 -8.49012 -6.26856 0.30739 1.30583 1.33329 1.42625 1.57032 1.73115 2.05383 2.12417 2.54042 2.60044 2.95310 3.07391 3.52934 3.63534 3.89374 3.95170 4.12337 4.22373 4.27226 4.39206 4.51448 4.52156 4.64775 4.72540 4.77050 4.83348 4.84878 4.89020 4.95194 4.97049 4.97473 5.00130 5.11232 5.11924 5.15594 5.21605 5.25433 5.28076 5.30437 5.33341 5.40454 5.45526 5.58772 5.61955 5.90314 6.04118 6.25676 6.50150 6.67448 6.83891 7.08266 7.40872 7.62438 8.49969 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.002048 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.821197 B =13668.966498 C =14470.957710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.069 4.069 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.141 4.141 10 N -0.681 5.681 11 C 0.525 3.475 12 O -0.542 6.542 13 C 0.484 3.516 14 O -0.544 6.544 15 N -0.583 5.583 16 C -0.056 4.056 17 C -0.049 4.049 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.253 1.253 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.076 4.076 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.416 0.584 46 H 0.423 0.577 47 H 0.176 0.824 48 H 0.278 0.722 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 6.412 22.922 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.202 4.202 8 C -0.202 4.202 9 C -0.198 4.198 10 N -0.334 5.334 11 C 0.305 3.695 12 O -0.420 6.420 13 C 0.266 3.734 14 O -0.422 6.422 15 N -0.228 5.228 16 C -0.163 4.163 17 C -0.224 4.224 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.177 1.177 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.227 4.227 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.253 0.747 46 H 0.260 0.740 47 H 0.192 0.808 48 H 0.088 0.912 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.665 5.313 22.133 23.235 hybrid contribution 0.088 0.398 -0.335 0.528 sum -4.578 5.711 21.798 22.994 Atomic orbital electron populations 1.22170 0.94015 1.02949 1.02821 1.21338 0.94833 0.97281 0.83124 0.90051 1.22029 0.95578 1.01897 0.96305 1.21655 0.95548 1.00361 0.97294 1.20536 0.95176 0.95770 0.95406 1.21950 1.01977 0.94827 1.01465 1.21895 0.95210 1.01577 1.01476 1.21915 1.01319 1.00299 0.96268 1.45910 1.64048 1.15094 1.08349 1.19634 0.78846 0.86460 0.84582 1.90728 1.50276 1.15855 1.85129 1.20387 0.81089 0.87090 0.84857 1.90640 1.50327 1.16425 1.84785 1.42104 1.60540 1.13849 1.06332 1.17300 1.18246 0.93171 0.87545 1.24243 1.06247 0.95703 0.96205 1.78153 1.26881 1.06094 1.02802 1.44837 1.35541 1.04859 1.07854 1.20619 1.46202 1.00284 0.81365 0.84110 1.26894 0.94738 0.93770 1.06374 1.70374 1.34374 1.01229 1.38859 0.84642 0.79704 0.78466 0.73345 1.17746 1.20191 1.17756 1.22001 1.13711 0.96832 0.90117 0.91502 0.89097 0.94051 0.87747 0.89906 0.93292 0.92256 0.93610 0.92521 0.91397 0.92804 0.92214 0.93717 0.91336 0.92614 0.92736 0.74657 0.73978 0.80769 0.91228 0.79539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 71.98 0.68 -1.69 16 2 C 0.14 2.24 2.57 44.99 0.12 2.35 16 3 H 0.08 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.12 -1.35 4.05 30.59 0.12 -1.22 16 5 C -0.11 -1.57 4.16 30.59 0.13 -1.44 16 6 C -0.07 -0.85 0.80 -52.18 -0.04 -0.90 16 7 C -0.15 -1.77 8.12 71.98 0.58 -1.19 16 8 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 9 C -0.14 -1.36 8.12 71.98 0.58 -0.78 16 10 N -0.68 -14.89 4.52 -444.02 -2.01 -16.90 16 11 C 0.52 15.25 7.85 87.23 0.68 15.94 16 12 O -0.54 -17.09 16.14 -3.30 -0.05 -17.15 16 13 C 0.48 17.35 7.85 87.23 0.69 18.04 16 14 O -0.54 -22.09 13.62 -3.39 -0.05 -22.14 16 15 N -0.58 -21.80 5.45 -305.33 -1.66 -23.47 16 16 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 17 C -0.05 -2.61 10.85 85.44 0.93 -1.68 16 18 N -0.31 -18.34 10.39 -56.44 -0.59 -18.93 16 19 N -0.16 -9.02 3.73 -189.97 -0.71 -9.73 16 20 C -0.35 -18.61 10.25 84.02 0.86 -17.75 16 21 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 22 C -0.01 -0.29 5.50 84.96 0.47 0.18 16 23 N -0.82 -46.84 11.81 21.66 0.26 -46.58 16 24 Si 1.02 38.20 29.55 68.60 2.03 40.23 16 25 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 26 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 28 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.79 6.43 -2.39 -0.02 0.78 16 33 H 0.08 0.83 6.43 -2.38 -0.02 0.82 16 34 H 0.05 0.88 7.75 -2.38 -0.02 0.86 16 35 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.69 6.43 -2.39 -0.02 0.68 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.07 0.52 6.43 -2.38 -0.02 0.51 16 43 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.42 8.62 8.07 -92.71 -0.75 7.87 16 46 H 0.42 13.36 8.29 -92.70 -0.77 12.59 16 47 H 0.18 9.17 5.92 -2.91 -0.02 9.15 16 48 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -71.58 400.09 4.31 -67.27 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -0.54 Total: 43.89 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 7.63 Total: 3.50 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.71 Total: -115.60 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.10 Total: -39.28 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -71.58 4.31 -67.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.221 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds