Wall clock time and date at job start Tue Mar 31 2020 19:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47322 * 2 1 4 4 N 1.46900 * 109.47416 * 120.00647 * 2 1 3 5 5 C 1.46893 * 110.99795 * 274.99886 * 4 2 1 6 6 C 1.50701 * 109.47344 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99876 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00412 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00313 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47073 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00539 * 0.02562 * 10 9 8 12 12 C 1.37888 * 119.99682 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00040 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99535 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46927 * 90.00668 * 14 12 10 16 16 H 1.48505 * 109.47124 * 210.00161 * 14 12 10 17 17 H 1.48492 * 109.47604 * 330.00183 * 14 12 10 18 18 C 1.50707 * 109.46956 * 240.00231 * 2 1 3 19 19 N 1.31134 * 126.54877 * 104.99687 * 18 2 1 20 20 C 1.34495 * 105.61390 * 179.97438 * 19 18 2 21 21 C 1.50697 * 126.28745 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47466 * 119.99716 * 21 20 19 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47233 * 299.99657 * 23 22 21 25 25 C 1.52997 * 109.46817 * 60.00194 * 24 23 22 26 26 C 1.52999 * 109.46961 * 240.00067 * 21 20 19 27 27 N 1.29943 * 107.42603 * 0.24171 * 20 19 18 28 28 O 1.21303 * 110.24941 * 359.58050 * 27 20 19 29 29 H 1.08998 * 109.47593 * 59.99906 * 1 2 3 30 30 H 1.09001 * 109.46802 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46829 * 299.99553 * 1 2 3 32 32 H 1.00902 * 111.00100 * 38.94947 * 4 2 1 33 33 H 1.09003 * 109.47130 * 299.99657 * 5 4 2 34 34 H 1.09003 * 109.47785 * 59.99767 * 5 4 2 35 35 H 0.97001 * 120.00107 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46976 * 300.00295 * 9 8 6 37 37 H 1.09005 * 109.46856 * 59.99927 * 9 8 6 38 38 H 0.96999 * 119.99488 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.47120 * 359.97438 * 21 20 19 40 40 H 1.09002 * 109.47153 * 59.99773 * 22 21 20 41 41 H 1.09001 * 109.46832 * 299.99964 * 22 21 20 42 42 H 1.08992 * 109.47399 * 59.99823 * 23 22 21 43 43 H 1.09004 * 109.46724 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47662 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47075 * 300.00932 * 24 23 22 46 46 H 1.09002 * 109.47153 * 60.00231 * 25 24 23 47 47 H 1.09001 * 109.47289 * 180.02562 * 25 24 23 48 48 H 1.09000 * 109.47486 * 59.99568 * 26 21 20 49 49 H 1.09002 * 109.46716 * 299.99650 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2223 2.3468 6 6 2.5887 -0.5218 3.5556 7 8 2.8690 -1.6987 3.4697 8 7 2.7289 0.1202 4.7323 9 6 3.2204 -0.6034 5.9075 10 6 3.2849 0.3353 7.0846 11 1 2.9890 1.3676 6.9691 12 6 3.7208 -0.1240 8.3095 13 7 4.0806 -1.3811 8.4504 14 14 3.8001 1.0395 9.7688 15 1 2.5060 1.0094 10.4967 16 1 4.8915 0.6147 10.6818 17 1 4.0657 2.4191 9.2881 18 6 2.0323 -0.7104 -1.2306 19 7 2.5496 -0.1518 -2.2983 20 6 2.8516 -1.1667 -3.1275 21 6 3.4727 -1.0463 -4.4953 22 6 4.8033 -1.8009 -4.5195 23 6 5.4341 -1.6780 -5.9080 24 6 4.4894 -2.2765 -6.9522 25 6 3.1587 -1.5218 -6.9279 26 6 2.5276 -1.6450 -5.5390 27 7 2.5042 -2.2698 -2.5351 28 8 2.0362 -2.0300 -1.4420 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.4496 -1.4981 1.4099 33 1 2.7590 1.0460 2.1182 34 1 1.0872 0.6161 2.5526 35 1 2.5044 1.0613 4.8011 36 1 2.5442 -1.4273 6.1359 37 1 4.2159 -0.9967 5.7019 38 1 4.3876 -1.7040 9.3120 39 1 3.6467 0.0052 -4.7240 40 1 4.6289 -2.8524 -4.2909 41 1 5.4765 -1.3743 -3.7759 42 1 5.6085 -0.6266 -6.1361 43 1 6.3819 -2.2161 -5.9253 44 1 4.9389 -2.1894 -7.9413 45 1 4.3149 -3.3280 -6.7240 46 1 3.3331 -0.4703 -7.1561 47 1 2.4854 -1.9484 -7.6715 48 1 1.5796 -1.1074 -5.5217 49 1 2.3533 -2.6964 -5.3104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755077025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:24 Heat of formation + Delta-G solvation = 3.370868 kcal Electronic energy + Delta-G solvation = -28158.293003 eV Core-core repulsion = 24122.392625 eV Total energy + Delta-G solvation = -4035.900379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.65765 -39.11623 -39.03295 -37.17097 -35.78349 -34.20365 -33.04455 -32.34870 -31.19127 -31.09743 -30.12967 -27.80049 -25.94775 -24.84640 -24.40509 -23.01823 -22.83600 -22.32684 -20.91882 -19.89888 -19.70917 -18.15446 -17.86337 -17.15415 -16.21837 -16.04314 -15.79054 -15.45408 -15.03680 -14.80854 -14.61211 -14.58158 -14.48610 -14.23500 -13.96623 -13.26593 -13.20793 -12.98965 -12.80720 -12.71865 -12.63355 -12.56786 -12.24330 -11.96384 -11.86265 -11.67045 -11.63947 -11.54387 -11.50781 -11.14467 -10.99980 -10.92295 -10.89648 -10.71369 -10.61935 -10.33786 -9.95458 -9.42057 -9.18853 -8.76067 -8.69102 -7.91180 -6.18332 -4.25554 1.06201 2.08471 2.69879 3.16743 3.22868 3.29311 3.31137 3.31562 3.65617 3.95480 4.23682 4.30492 4.32723 4.39813 4.43961 4.56669 4.60714 4.82080 4.82406 4.93137 5.03257 5.04257 5.08649 5.14470 5.17487 5.17886 5.23111 5.32875 5.36630 5.41902 5.51635 5.58774 5.60624 5.67135 5.69952 5.70563 5.73741 5.82735 5.87143 5.89534 6.05456 6.52268 7.07847 7.28983 7.39851 7.49802 7.64115 7.95054 8.09232 8.58665 8.75651 9.06278 9.41119 10.91787 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025504 B = 0.001678 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.613950 B =16684.386426 C =17212.042030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.178 3.822 3 H 0.125 0.875 4 N -0.666 5.666 5 C 0.041 3.959 6 C 0.496 3.504 7 O -0.541 6.541 8 N -0.712 5.712 9 C 0.250 3.750 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.205 3.795 19 N -0.484 5.484 20 C 0.172 3.828 21 C 0.008 3.992 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.111 4.111 27 N -0.381 5.381 28 O 0.088 5.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.363 0.637 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 4.302 -29.314 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.065 3.935 3 H 0.143 0.857 4 N -0.300 5.300 5 C -0.091 4.091 6 C 0.280 3.720 7 O -0.419 6.419 8 N -0.362 5.362 9 C 0.130 3.870 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.016 4.016 19 N -0.218 5.218 20 C -0.101 4.101 21 C -0.013 4.013 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.150 4.150 27 N -0.088 5.088 28 O 0.030 5.970 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.223 0.777 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.397 2.905 -29.968 30.428 hybrid contribution -0.963 1.159 1.393 2.052 sum -5.360 4.064 -28.575 29.356 Atomic orbital electron populations 1.22565 0.93882 1.03955 1.04039 1.19955 0.93617 0.96689 0.83235 0.85699 1.59942 1.58230 1.09633 1.02240 1.21904 1.01474 0.95856 0.89853 1.20230 0.79644 0.87909 0.84254 1.90695 1.50566 1.16010 1.84611 1.46432 1.65373 1.13901 1.10459 1.19108 0.95074 0.92456 0.80399 1.21224 1.46233 0.96515 0.94328 0.91875 1.24959 0.94785 0.95338 0.98942 1.69976 1.42834 1.14356 1.25021 0.86410 0.77841 0.80716 0.81898 1.20473 1.21005 1.19755 1.28635 0.94876 0.81229 0.96904 1.71849 1.17097 1.30799 1.02056 1.25757 1.00757 0.83772 0.99850 1.19574 0.94654 1.02328 0.84698 1.21595 0.94709 1.00960 0.97852 1.21519 0.98481 1.01481 0.93959 1.21576 0.95467 0.99985 0.98971 1.21527 0.96784 1.00955 0.96153 1.21596 0.97752 1.01690 0.93914 1.74592 1.15713 1.23985 0.94504 1.85314 1.58115 1.26838 1.26746 0.90960 0.91092 0.90083 0.81547 0.87995 0.91857 0.77719 0.95514 0.95479 0.92422 0.88226 0.91077 0.91471 0.91622 0.91433 0.91775 0.91784 0.91627 0.91540 0.91716 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.14 37.16 0.34 -0.96 16 2 C 0.18 1.69 3.13 -68.86 -0.22 1.48 16 3 H 0.13 1.03 7.80 -51.93 -0.40 0.62 16 4 N -0.67 -8.21 5.86 -109.22 -0.64 -8.85 16 5 C 0.04 0.50 5.96 -4.98 -0.03 0.47 16 6 C 0.50 9.22 7.87 -10.99 -0.09 9.13 16 7 O -0.54 -12.58 16.20 5.55 0.09 -12.49 16 8 N -0.71 -14.16 5.55 -61.47 -0.34 -14.50 16 9 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16 10 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 11 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.74 5.46 -17.81 -0.10 1.64 16 13 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 14 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 18 C 0.21 2.49 7.35 -13.05 -0.10 2.39 16 19 N -0.48 -6.18 11.55 -9.87 -0.11 -6.30 16 20 C 0.17 2.12 6.72 -156.38 -1.05 1.07 16 21 C 0.01 0.07 2.66 -91.78 -0.24 -0.17 16 22 C -0.11 -0.98 5.19 -26.73 -0.14 -1.12 16 23 C -0.12 -0.76 5.92 -26.73 -0.16 -0.91 16 24 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 25 C -0.12 -0.69 5.92 -26.70 -0.16 -0.85 16 26 C -0.11 -0.87 5.19 -26.70 -0.14 -1.01 16 27 N -0.38 -5.23 12.16 30.90 0.38 -4.86 16 28 O 0.09 1.21 11.31 18.11 0.20 1.41 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.08 0.48 7.45 -51.93 -0.39 0.09 16 32 H 0.36 4.61 8.17 -39.29 -0.32 4.29 16 33 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 34 H 0.06 0.58 7.44 -51.93 -0.39 0.20 16 35 H 0.39 6.46 8.32 -40.82 -0.34 6.12 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -33.55 403.18 -9.34 -42.89 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.13 Total: 4.26 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.58 Total: 1.93 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.02 Total: -59.62 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.29 Total: -11.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.55 -9.34 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755077025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.262 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds