Wall clock time and date at job start Tue Mar 31 2020 19:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47322 * 2 1 4 4 N 1.46900 * 109.47416 * 120.00647 * 2 1 3 5 5 C 1.46893 * 110.99795 * 274.99886 * 4 2 1 6 6 C 1.50701 * 109.47344 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99876 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00412 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00313 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47073 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00539 * 0.02562 * 10 9 8 12 12 C 1.37888 * 119.99682 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00040 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99535 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46927 * 90.00668 * 14 12 10 16 16 H 1.48505 * 109.47124 * 210.00161 * 14 12 10 17 17 H 1.48492 * 109.47604 * 330.00183 * 14 12 10 18 18 C 1.50707 * 109.46956 * 240.00231 * 2 1 3 19 19 N 1.31134 * 126.54877 * 104.99687 * 18 2 1 20 20 C 1.34495 * 105.61390 * 179.97438 * 19 18 2 21 21 C 1.50697 * 126.28745 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47466 * 119.99716 * 21 20 19 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47233 * 299.99657 * 23 22 21 25 25 C 1.52997 * 109.46817 * 60.00194 * 24 23 22 26 26 C 1.52999 * 109.46961 * 240.00067 * 21 20 19 27 27 N 1.29943 * 107.42603 * 0.24171 * 20 19 18 28 28 O 1.21303 * 110.24941 * 359.58050 * 27 20 19 29 29 H 1.08998 * 109.47593 * 59.99906 * 1 2 3 30 30 H 1.09001 * 109.46802 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46829 * 299.99553 * 1 2 3 32 32 H 1.00902 * 111.00100 * 38.94947 * 4 2 1 33 33 H 1.09003 * 109.47130 * 299.99657 * 5 4 2 34 34 H 1.09003 * 109.47785 * 59.99767 * 5 4 2 35 35 H 0.97001 * 120.00107 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46976 * 300.00295 * 9 8 6 37 37 H 1.09005 * 109.46856 * 59.99927 * 9 8 6 38 38 H 0.96999 * 119.99488 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.47120 * 359.97438 * 21 20 19 40 40 H 1.09002 * 109.47153 * 59.99773 * 22 21 20 41 41 H 1.09001 * 109.46832 * 299.99964 * 22 21 20 42 42 H 1.08992 * 109.47399 * 59.99823 * 23 22 21 43 43 H 1.09004 * 109.46724 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47662 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47075 * 300.00932 * 24 23 22 46 46 H 1.09002 * 109.47153 * 60.00231 * 25 24 23 47 47 H 1.09001 * 109.47289 * 180.02562 * 25 24 23 48 48 H 1.09000 * 109.47486 * 59.99568 * 26 21 20 49 49 H 1.09002 * 109.46716 * 299.99650 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2223 2.3468 6 6 2.5887 -0.5218 3.5556 7 8 2.8690 -1.6987 3.4697 8 7 2.7289 0.1202 4.7323 9 6 3.2204 -0.6034 5.9075 10 6 3.2849 0.3353 7.0846 11 1 2.9890 1.3676 6.9691 12 6 3.7208 -0.1240 8.3095 13 7 4.0806 -1.3811 8.4504 14 14 3.8001 1.0395 9.7688 15 1 2.5060 1.0094 10.4967 16 1 4.8915 0.6147 10.6818 17 1 4.0657 2.4191 9.2881 18 6 2.0323 -0.7104 -1.2306 19 7 2.5496 -0.1518 -2.2983 20 6 2.8516 -1.1667 -3.1275 21 6 3.4727 -1.0463 -4.4953 22 6 4.8033 -1.8009 -4.5195 23 6 5.4341 -1.6780 -5.9080 24 6 4.4894 -2.2765 -6.9522 25 6 3.1587 -1.5218 -6.9279 26 6 2.5276 -1.6450 -5.5390 27 7 2.5042 -2.2698 -2.5351 28 8 2.0362 -2.0300 -1.4420 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.4496 -1.4981 1.4099 33 1 2.7590 1.0460 2.1182 34 1 1.0872 0.6161 2.5526 35 1 2.5044 1.0613 4.8011 36 1 2.5442 -1.4273 6.1359 37 1 4.2159 -0.9967 5.7019 38 1 4.3876 -1.7040 9.3120 39 1 3.6467 0.0052 -4.7240 40 1 4.6289 -2.8524 -4.2909 41 1 5.4765 -1.3743 -3.7759 42 1 5.6085 -0.6266 -6.1361 43 1 6.3819 -2.2161 -5.9253 44 1 4.9389 -2.1894 -7.9413 45 1 4.3149 -3.3280 -6.7240 46 1 3.3331 -0.4703 -7.1561 47 1 2.4854 -1.9484 -7.6715 48 1 1.5796 -1.1074 -5.5217 49 1 2.3533 -2.6964 -5.3104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755077025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:23 Heat of formation + Delta-G solvation = -22.481422 kcal Electronic energy + Delta-G solvation = -28159.414043 eV Core-core repulsion = 24122.392625 eV Total energy + Delta-G solvation = -4037.021418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.62631 -40.56104 -39.70786 -38.17590 -36.69312 -36.07691 -34.33548 -33.92873 -31.89964 -31.77391 -30.99866 -29.52246 -27.15437 -25.70087 -25.43940 -24.25325 -23.59729 -23.52764 -21.61794 -21.40614 -20.48266 -19.26695 -19.04709 -18.45179 -17.65765 -17.24547 -16.80162 -16.71260 -16.50524 -15.75915 -15.64365 -15.43945 -15.35423 -15.21559 -15.02850 -14.41702 -14.11425 -14.04922 -13.89583 -13.82130 -13.63491 -13.58709 -13.21960 -13.21526 -12.90870 -12.83317 -12.67432 -12.62807 -12.43958 -12.34976 -12.21080 -12.12541 -12.00359 -11.47797 -11.46685 -11.31259 -11.28891 -10.82738 -10.78524 -10.74734 -9.81501 -9.59761 -8.27459 -6.43930 0.11098 1.14541 1.44824 1.47057 1.58223 1.82400 1.82624 2.18542 2.38691 2.62117 2.97709 3.07755 3.30647 3.60686 3.71453 3.77253 3.84365 3.98018 4.00231 4.17364 4.23345 4.27014 4.36460 4.38556 4.46909 4.50099 4.50813 4.56634 4.62031 4.70610 4.79893 4.83772 5.00999 5.01448 5.10257 5.13993 5.16622 5.16682 5.18904 5.27086 5.29335 5.32553 5.49961 5.51220 5.63831 5.77460 5.87322 6.12040 6.68093 6.97207 7.13250 7.25973 7.56283 8.84647 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025504 B = 0.001678 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.613950 B =16684.386426 C =17212.042030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.183 3.817 3 H 0.146 0.854 4 N -0.690 5.690 5 C 0.060 3.940 6 C 0.491 3.509 7 O -0.595 6.595 8 N -0.707 5.707 9 C 0.266 3.734 10 C -0.555 4.555 11 H 0.087 0.913 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.985 3.015 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.254 1.254 18 C 0.205 3.795 19 N -0.497 5.497 20 C 0.171 3.829 21 C 0.007 3.993 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.106 4.106 27 N -0.405 5.405 28 O 0.068 5.932 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.358 0.642 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.410 0.590 36 H -0.012 1.012 37 H -0.017 1.017 38 H 0.268 0.732 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 7.618 -30.457 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 H 0.164 0.836 4 N -0.324 5.324 5 C -0.072 4.072 6 C 0.278 3.722 7 O -0.476 6.476 8 N -0.357 5.357 9 C 0.143 3.857 10 C -0.593 4.593 11 H 0.105 0.895 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.808 3.192 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.178 1.178 18 C -0.016 4.016 19 N -0.231 5.231 20 C -0.102 4.102 21 C -0.013 4.013 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.149 4.149 26 C -0.145 4.145 27 N -0.115 5.115 28 O 0.013 5.987 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.179 0.821 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.247 0.753 36 H 0.006 0.994 37 H 0.001 0.999 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.336 6.279 -31.133 32.205 hybrid contribution -0.671 0.075 1.692 1.822 sum -6.007 6.354 -29.441 30.712 Atomic orbital electron populations 1.22535 0.91623 1.04082 1.05484 1.20176 0.95200 0.96632 0.80848 0.83622 1.59841 1.59300 1.10137 1.03152 1.21840 1.03981 0.94960 0.86370 1.21434 0.77922 0.87516 0.85335 1.90674 1.52564 1.18829 1.85524 1.46130 1.65485 1.14638 1.09497 1.18510 0.92011 0.92165 0.83032 1.21651 1.45719 0.97476 0.94413 0.89521 1.26082 0.94094 0.97018 1.02548 1.70148 1.44106 1.16877 1.25952 0.85155 0.77858 0.78781 0.77401 1.19577 1.21276 1.17790 1.29302 0.93936 0.80796 0.97571 1.71865 1.17756 1.31018 1.02488 1.26370 0.99813 0.83385 1.00681 1.19769 0.94925 1.03046 0.83574 1.21562 0.94424 0.99689 0.99164 1.21512 0.98623 1.02345 0.92520 1.21582 0.95372 0.99458 0.99495 1.21523 0.96807 1.01762 0.94852 1.21559 0.97604 1.00547 0.94742 1.74589 1.17061 1.24946 0.94951 1.85282 1.58707 1.27754 1.26951 0.89986 0.91716 0.88037 0.82147 0.85236 0.87462 0.75349 0.99446 0.99870 0.92360 0.87258 0.92722 0.92687 0.90540 0.90940 0.90142 0.92541 0.90525 0.90485 0.91784 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.14 71.98 0.66 -1.36 16 2 C 0.18 3.09 3.13 44.17 0.14 3.23 16 3 H 0.15 1.86 7.80 -2.39 -0.02 1.85 16 4 N -0.69 -16.02 5.86 -499.47 -2.92 -18.95 16 5 C 0.06 1.27 5.96 85.56 0.51 1.78 16 6 C 0.49 18.10 7.87 87.66 0.69 18.79 16 7 O -0.59 -28.73 16.20 -3.04 -0.05 -28.78 16 8 N -0.71 -27.88 5.55 -466.79 -2.59 -30.47 16 9 C 0.27 14.33 5.43 85.63 0.46 14.79 16 10 C -0.55 -29.53 9.28 25.60 0.24 -29.29 16 11 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 12 C 0.00 0.11 5.46 84.66 0.46 0.57 16 13 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 14 Si 0.98 41.71 29.54 68.60 2.03 43.74 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 18 C 0.21 4.85 7.35 88.38 0.65 5.50 16 19 N -0.50 -12.39 11.55 -303.20 -3.50 -15.89 16 20 C 0.17 4.25 6.72 138.46 0.93 5.18 16 21 C 0.01 0.12 2.66 -11.54 -0.03 0.09 16 22 C -0.11 -1.92 5.19 30.59 0.16 -1.76 16 23 C -0.11 -1.32 5.92 30.60 0.18 -1.14 16 24 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 25 C -0.11 -1.13 5.92 30.61 0.18 -0.95 16 26 C -0.11 -1.60 5.19 30.61 0.16 -1.44 16 27 N -0.41 -11.52 12.16 -60.33 -0.73 -12.25 16 28 O 0.07 1.90 11.31 74.85 0.85 2.75 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.10 0.77 7.45 -2.39 -0.02 0.75 16 32 H 0.36 8.96 8.17 -89.69 -0.73 8.22 16 33 H 0.13 2.16 8.06 -2.39 -0.02 2.14 16 34 H 0.11 1.45 7.44 -2.39 -0.02 1.43 16 35 H 0.41 12.73 8.32 -92.71 -0.77 11.96 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 37 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 38 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.86 403.18 -1.61 -79.47 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.54 Total: 23.26 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.57 Total: 12.94 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -9.47 Total: -133.38 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.80 Total: -26.03 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -77.86 -1.61 -79.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755077025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.992 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds