Wall clock time and date at job start Tue Mar 31 2020 19:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99838 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46890 * 179.97438 * 4 3 2 6 6 N 1.28446 * 125.18987 * 86.38516 * 5 4 3 7 7 C 1.30858 * 110.92841 * 179.97438 * 6 5 4 8 8 C 1.39674 * 107.86361 * 0.02562 * 7 6 5 9 9 C 1.36606 * 125.19414 * 266.07680 * 5 4 3 10 10 C 1.47164 * 126.88003 * 359.97438 * 9 5 4 11 11 O 1.21627 * 119.99930 * 5.38916 * 10 9 5 12 12 N 1.34776 * 119.99557 * 185.39238 * 10 9 5 13 13 C 1.46502 * 119.99424 * 184.89979 * 12 10 9 14 14 H 1.08992 * 109.46332 * 324.99887 * 13 12 10 15 15 C 1.53041 * 109.45964 * 84.97248 * 13 12 10 16 16 C 1.53194 * 109.31627 * 58.65360 * 15 13 12 17 17 N 1.46924 * 108.77477 * 54.63066 * 16 15 13 18 18 C 1.36941 * 120.62441 * 126.37353 * 17 16 15 19 19 H 1.07996 * 120.00271 * 332.47180 * 18 17 16 20 20 C 1.38814 * 119.99685 * 152.48253 * 18 17 16 21 21 N 1.31611 * 120.00125 * 160.34510 * 20 18 17 22 22 Si 1.86804 * 119.99944 * 340.34321 * 20 18 17 23 23 H 1.48502 * 109.47406 * 95.07970 * 22 20 18 24 24 H 1.48501 * 109.47249 * 215.08129 * 22 20 18 25 25 H 1.48500 * 109.47004 * 335.07741 * 22 20 18 26 26 C 1.46924 * 118.74127 * 306.39436 * 17 16 15 27 27 C 1.53043 * 109.45879 * 205.02169 * 13 12 10 28 28 H 1.08995 * 109.49815 * 181.39586 * 27 13 12 29 29 C 1.53005 * 109.49191 * 61.29802 * 27 13 12 30 30 H 1.08996 * 109.47342 * 300.00994 * 1 2 3 31 31 H 1.09003 * 109.46506 * 60.00405 * 1 2 3 32 32 H 1.08997 * 109.47135 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47695 * 60.00031 * 3 2 1 34 34 H 1.09002 * 109.46895 * 299.98740 * 3 2 1 35 35 H 1.09005 * 109.46810 * 59.99874 * 4 3 2 36 36 H 1.09001 * 109.47451 * 299.99857 * 4 3 2 37 37 H 1.08005 * 126.06890 * 179.97438 * 7 6 5 38 38 H 1.08001 * 127.32171 * 179.97438 * 8 7 6 39 39 H 0.96992 * 120.00623 * 4.89741 * 12 10 9 40 40 H 1.09003 * 109.49836 * 178.60399 * 15 13 12 41 41 H 1.09002 * 109.49916 * 298.66629 * 15 13 12 42 42 H 1.08994 * 109.58684 * 174.42667 * 16 15 13 43 43 H 1.09004 * 109.58256 * 294.85162 * 16 15 13 44 44 H 0.97007 * 120.00301 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.58535 * 173.39045 * 26 17 16 46 46 H 1.08992 * 109.58742 * 293.68064 * 26 17 16 47 47 H 1.08994 * 109.46913 * 60.00269 * 29 27 13 48 48 H 1.09004 * 109.46800 * 179.97438 * 29 27 13 49 49 H 1.09000 * 109.47271 * 299.99732 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0000 6 7 4.3715 3.2267 1.0473 7 6 4.9066 4.3766 0.7251 8 6 5.0229 4.4203 -0.6661 9 6 4.5218 3.2104 -1.1140 10 6 4.4260 2.7566 -2.5106 11 8 3.8705 1.7067 -2.7722 12 7 4.9541 3.5043 -3.4998 13 6 4.7660 3.1081 -4.8976 14 1 4.7715 2.0207 -4.9708 15 6 3.4259 3.6464 -5.4042 16 6 3.4086 5.1722 -5.2681 17 7 4.5811 5.7222 -5.9620 18 6 4.4350 6.6953 -6.9144 19 1 3.5182 6.7630 -7.4811 20 6 5.4656 7.5945 -7.1516 21 7 5.5077 8.2634 -8.2842 22 14 6.7928 7.8551 -5.8630 23 1 7.9578 6.9868 -6.1697 24 1 7.2194 9.2775 -5.8725 25 1 6.2561 7.5083 -4.5226 26 6 5.9130 5.2080 -5.6151 27 6 5.9020 3.6822 -5.7475 28 1 5.7493 3.4086 -6.7915 29 6 7.2386 3.1182 -5.2613 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8574 0.6434 -0.8891 36 1 3.8568 0.6438 0.8909 37 1 5.2045 5.1543 1.4128 38 1 5.4230 5.2252 -1.2648 39 1 5.4586 4.3047 -3.2863 40 1 3.2966 3.3731 -6.4515 41 1 2.6155 3.2188 -4.8139 42 1 2.4984 5.5688 -5.7176 43 1 3.4469 5.4453 -4.2135 44 1 6.2277 8.8921 -8.4498 45 1 6.6550 5.6284 -6.2938 46 1 6.1563 5.4863 -4.5898 47 1 7.2296 2.0322 -5.3530 48 1 8.0473 3.5269 -5.8671 49 1 7.3911 3.3935 -4.2177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942163729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:21 Heat of formation + Delta-G solvation = 25.797176 kcal Electronic energy + Delta-G solvation = -30630.816201 eV Core-core repulsion = 26595.888300 eV Total energy + Delta-G solvation = -4034.927901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.72212 -39.98060 -38.28028 -37.88464 -34.66141 -33.99240 -32.64447 -32.03525 -31.14165 -29.92770 -29.54218 -26.62230 -26.30584 -25.41712 -24.03153 -23.33672 -22.50096 -21.60694 -21.01477 -20.05659 -18.97031 -18.27673 -17.00023 -16.87292 -16.38421 -16.36658 -15.91476 -15.57599 -15.17656 -15.03419 -14.77882 -14.35030 -14.26223 -14.07827 -13.73539 -13.69671 -13.47455 -13.34722 -13.06766 -12.81955 -12.39200 -12.28533 -12.00797 -11.83120 -11.64975 -11.59606 -11.42333 -11.25722 -10.99577 -10.76562 -10.58765 -10.31654 -10.13952 -10.04988 -9.98470 -9.76173 -9.53261 -9.42376 -9.23971 -8.87051 -8.68461 -7.04271 -6.00248 -3.37512 1.10729 2.03851 2.44435 3.12429 3.14974 3.24786 3.39857 3.43448 3.65704 4.29425 4.45591 4.51421 4.59113 4.74836 4.84738 4.92433 4.96002 4.99428 5.03750 5.05944 5.23542 5.24236 5.33119 5.34608 5.39477 5.40728 5.51617 5.59393 5.61492 5.79568 5.84275 5.90422 5.97053 6.09729 6.20330 6.29195 6.30605 6.33198 6.48683 6.52799 6.56699 6.61236 6.64388 6.72592 6.85433 7.47317 7.86459 7.89554 8.12725 8.27448 8.87239 9.65386 10.02055 11.15700 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.003306 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.457466 B = 8467.974221 C = 9051.645929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.121 3.879 5 N -0.257 5.257 6 N -0.280 5.280 7 C 0.001 3.999 8 C -0.186 4.186 9 C -0.031 4.031 10 C 0.588 3.412 11 O -0.543 6.543 12 N -0.696 5.696 13 C 0.160 3.840 14 H 0.084 0.916 15 C -0.147 4.147 16 C 0.150 3.850 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.086 0.914 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.882 3.118 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.132 3.868 27 C -0.119 4.119 28 H 0.091 0.909 29 C -0.146 4.146 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.188 0.812 38 H 0.162 0.838 39 H 0.404 0.596 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.263 0.737 45 H 0.076 0.924 46 H 0.021 0.979 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -13.096 16.502 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.022 4.022 4 C 0.000 4.000 5 N -0.046 5.046 6 N -0.111 5.111 7 C -0.175 4.175 8 C -0.215 4.215 9 C -0.160 4.160 10 C 0.373 3.627 11 O -0.422 6.422 12 N -0.348 5.348 13 C 0.057 3.943 14 H 0.102 0.898 15 C -0.187 4.187 16 C 0.024 3.976 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.713 3.287 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.006 3.994 27 C -0.140 4.140 28 H 0.109 0.891 29 C -0.204 4.204 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.205 0.795 38 H 0.180 0.820 39 H 0.240 0.760 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.599 -14.645 17.079 22.785 hybrid contribution 1.111 1.539 0.109 1.901 sum -2.488 -13.106 17.188 21.758 Atomic orbital electron populations 1.22779 0.80079 1.03062 1.00321 1.87783 1.20424 1.26578 1.95549 1.22622 0.92464 0.85662 1.01450 1.21829 0.92624 0.78419 1.07129 1.45467 1.42629 1.14449 1.02079 1.73207 1.18207 1.06014 1.13712 1.23598 1.03270 0.95642 0.95027 1.22357 1.05964 0.97379 0.95756 1.21554 1.09191 0.95217 0.89992 1.16884 0.79030 0.83838 0.82929 1.90778 1.44561 1.22880 1.83976 1.45882 1.54255 1.28464 1.06193 1.21001 0.95676 0.99285 0.78362 0.89811 1.22401 0.95909 0.98941 1.01454 1.20887 0.91068 0.90614 0.94988 1.44350 1.00213 1.43330 1.44867 1.18925 1.03932 1.05517 1.10468 0.89643 1.25294 0.98264 0.97049 0.96989 1.69822 1.33552 1.29271 1.22424 0.86952 0.81863 0.76164 0.83725 1.21650 1.23164 1.19465 1.21369 0.89305 0.90793 0.97970 1.21972 0.93335 0.98494 1.00152 0.89071 1.21800 0.97194 1.00410 1.00950 0.93939 0.93646 0.89171 0.92585 0.92121 0.85520 0.87735 0.79517 0.82033 0.75958 0.90657 0.92205 0.91847 0.96040 0.92728 0.90619 0.96098 0.92851 0.92383 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.27 10.70 -35.23 -0.38 -4.65 16 3 C 0.06 0.62 6.26 37.16 0.23 0.85 16 4 C 0.12 1.36 6.22 -4.04 -0.03 1.34 16 5 N -0.26 -3.27 3.35 -57.13 -0.19 -3.46 16 6 N -0.28 -3.51 11.90 30.59 0.36 -3.14 16 7 C 0.00 0.01 12.03 -17.43 -0.21 -0.20 16 8 C -0.19 -2.16 10.50 -38.99 -0.41 -2.56 16 9 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 10 C 0.59 8.44 7.75 -12.64 -0.10 8.35 16 11 O -0.54 -8.79 14.31 5.25 0.08 -8.72 16 12 N -0.70 -9.74 3.58 -54.92 -0.20 -9.93 16 13 C 0.16 2.40 2.25 -67.89 -0.15 2.25 16 14 H 0.08 1.25 7.51 -51.93 -0.39 0.86 16 15 C -0.15 -2.35 5.77 -26.61 -0.15 -2.51 16 16 C 0.15 2.80 6.26 -3.71 -0.02 2.78 16 17 N -0.60 -13.29 2.77 -172.34 -0.48 -13.77 16 18 C -0.26 -6.94 10.04 -15.06 -0.15 -7.09 16 19 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 20 C 0.02 0.64 5.25 -17.43 -0.09 0.55 16 21 N -0.91 -27.08 13.97 55.49 0.78 -26.31 16 22 Si 0.88 21.20 24.34 -169.99 -4.14 17.06 16 23 H -0.29 -6.68 6.72 56.52 0.38 -6.30 16 24 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 25 H -0.27 -6.15 6.40 56.52 0.36 -5.79 16 26 C 0.13 2.57 3.17 -3.73 -0.01 2.56 16 27 C -0.12 -1.88 2.67 -90.51 -0.24 -2.13 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 29 C -0.15 -1.96 9.05 37.16 0.34 -1.62 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.13 1.57 6.21 -51.93 -0.32 1.25 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.19 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.16 1.63 7.62 -52.49 -0.40 1.23 16 39 H 0.40 5.47 5.81 -40.82 -0.24 5.24 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 1.67 4.50 -51.93 -0.23 1.44 16 46 H 0.02 0.40 5.44 -51.93 -0.28 0.11 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -31.48 384.63 -6.59 -38.07 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.76 Total: 6.09 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.46 Total: 2.96 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.27 Total: -56.60 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.30 Total: -13.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.14 Total: 17.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.48 -6.59 -38.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942163729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds