Wall clock time and date at job start Tue Mar 31 2020 19:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99721 * 2 1 4 4 C 1.50703 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98695 * 270.03963 * 4 3 2 6 6 N 1.39935 * 108.89430 * 179.97438 * 5 4 3 7 7 C 1.46499 * 125.75017 * 180.02562 * 6 5 4 8 8 C 1.34254 * 108.49442 * 359.72620 * 6 5 4 9 9 C 1.38047 * 107.41673 * 0.43246 * 8 6 5 10 10 C 1.47422 * 126.41545 * 179.82969 * 9 8 6 11 11 O 1.21603 * 120.00183 * 179.68892 * 10 9 8 12 12 N 1.34780 * 120.00135 * 359.96714 * 10 9 8 13 13 C 1.46503 * 120.00164 * 179.71949 * 12 10 9 14 14 H 1.09001 * 109.45941 * 325.03277 * 13 12 10 15 15 C 1.53042 * 109.45612 * 84.99815 * 13 12 10 16 16 C 1.53192 * 109.31142 * 181.38535 * 15 13 12 17 17 N 1.46926 * 108.77586 * 305.36680 * 16 15 13 18 18 C 1.36941 * 120.63299 * 233.63099 * 17 16 15 19 19 H 1.08002 * 119.99908 * 27.67740 * 18 17 16 20 20 C 1.38809 * 119.99974 * 207.67703 * 18 17 16 21 21 N 1.31622 * 119.99869 * 17.35362 * 20 18 17 22 22 Si 1.86800 * 120.00195 * 197.34883 * 20 18 17 23 23 H 1.48501 * 109.46858 * 59.99816 * 22 20 18 24 24 H 1.48495 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46933 * 300.00567 * 22 20 18 26 26 C 1.46929 * 118.74016 * 53.60897 * 17 16 15 27 27 C 1.53034 * 109.46116 * 205.06881 * 13 12 10 28 28 H 1.09002 * 109.49887 * 298.56757 * 27 13 12 29 29 C 1.52999 * 109.49850 * 58.66767 * 27 13 12 30 30 H 1.08998 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46857 * 299.99874 * 1 2 3 32 32 H 1.08999 * 109.47454 * 59.99775 * 1 2 3 33 33 H 1.08999 * 109.47293 * 60.00458 * 3 2 1 34 34 H 1.08999 * 109.47200 * 300.00183 * 3 2 1 35 35 H 1.08996 * 109.47385 * 89.97494 * 7 6 5 36 36 H 1.08999 * 109.47137 * 209.97225 * 7 6 5 37 37 H 1.09006 * 109.47092 * 329.96890 * 7 6 5 38 38 H 1.08000 * 126.29209 * 180.30240 * 8 6 5 39 39 H 0.96992 * 119.99639 * 359.71975 * 12 10 9 40 40 H 1.08992 * 109.50327 * 301.34073 * 15 13 12 41 41 H 1.09007 * 109.49407 * 61.43722 * 15 13 12 42 42 H 1.08993 * 109.58749 * 65.15477 * 16 15 13 43 43 H 1.09001 * 109.58517 * 185.58593 * 16 15 13 44 44 H 0.97003 * 119.99644 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58004 * 66.17613 * 26 17 16 46 46 H 1.08990 * 109.59013 * 186.60321 * 26 17 16 47 47 H 1.08991 * 109.47230 * 59.99709 * 29 27 13 48 48 H 1.08999 * 109.47237 * 180.02562 * 29 27 13 49 49 H 1.09003 * 109.46644 * 299.99589 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2770 1.1251 1.0546 6 7 5.6102 1.0193 0.6427 7 6 6.7743 0.9256 1.5271 8 6 5.6419 1.0114 -0.6994 9 6 4.3397 1.1214 -1.1442 10 6 3.8949 1.1577 -2.5493 11 8 2.7109 1.2520 -2.8100 12 7 4.8001 1.0806 -3.5449 13 6 4.3576 1.1105 -4.9412 14 1 3.4006 0.5963 -5.0299 15 6 4.1996 2.5636 -5.3949 16 6 3.7037 2.5907 -6.8441 17 7 4.6207 1.7962 -7.6726 18 6 5.1917 2.3349 -8.7946 19 1 5.3564 3.4004 -8.8582 20 6 5.5589 1.5117 -9.8502 21 7 5.0670 0.2939 -9.9369 22 14 6.7510 2.1320 -11.1477 23 1 8.0413 2.4879 -10.5046 24 1 6.9782 1.0693 -12.1597 25 1 6.1806 3.3324 -11.8104 26 6 4.9138 0.4126 -7.2743 27 6 5.3960 0.4098 -5.8202 28 1 6.3470 0.9382 -5.7514 29 6 5.5772 -1.0332 -5.3451 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 6.9812 -0.1219 1.7458 36 1 7.6396 1.3722 1.0372 37 1 6.5685 1.4571 2.4563 38 1 6.5243 0.9354 -1.3176 39 1 5.7445 1.0054 -3.3369 40 1 3.4772 3.0684 -4.7536 41 1 5.1619 3.0716 -5.3300 42 1 2.7021 2.1641 -6.8956 43 1 3.6841 3.6193 -7.2043 44 1 5.3239 -0.2815 -10.6743 45 1 4.0107 -0.1916 -7.3609 46 1 5.6924 0.0040 -7.9183 47 1 4.6262 -1.5610 -5.4156 48 1 6.3172 -1.5317 -5.9712 49 1 5.9177 -1.0347 -4.3096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942194463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:34 Heat of formation + Delta-G solvation = 17.225507 kcal Electronic energy + Delta-G solvation = -29916.668989 eV Core-core repulsion = 25881.369393 eV Total energy + Delta-G solvation = -4035.299596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63755 -39.36928 -37.82093 -37.37133 -34.46056 -33.83137 -32.42166 -31.80810 -30.71243 -29.24621 -29.01009 -26.73305 -25.90893 -25.47170 -24.73795 -22.89224 -21.86259 -20.86847 -20.29297 -19.95470 -19.18881 -17.74091 -16.70958 -16.59951 -16.11610 -15.78169 -15.70769 -15.57813 -15.25811 -14.78522 -14.47093 -14.11791 -13.80069 -13.67774 -13.54985 -13.22383 -13.05389 -12.91732 -12.79785 -12.50046 -12.39340 -12.21648 -12.00289 -11.48478 -11.43428 -11.27467 -11.10872 -11.03073 -10.72661 -10.61766 -10.32036 -10.14196 -9.97638 -9.92860 -9.73860 -9.71324 -9.55208 -9.33148 -8.90888 -8.56603 -8.40820 -6.66512 -5.77873 -3.19519 1.32392 1.86101 2.05800 3.38514 3.44626 3.45589 3.48578 3.56038 3.89284 4.17105 4.37147 4.50493 4.66512 4.73019 4.92335 4.98137 5.11430 5.21573 5.28745 5.31679 5.34583 5.38123 5.45429 5.49368 5.62829 5.63442 5.70784 5.73284 5.93777 6.13502 6.15694 6.21020 6.30069 6.40800 6.51134 6.52251 6.57497 6.65078 6.74112 6.83449 7.03043 7.03662 7.06799 7.31564 7.36553 7.65003 7.79822 7.87236 8.46160 8.56199 9.22459 9.85931 10.43029 11.30805 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002697 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.618278 B =10380.033673 C =11200.001175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.142 3.858 4 C 0.129 3.871 5 N -0.283 5.283 6 N -0.360 5.360 7 C 0.097 3.903 8 C 0.094 3.906 9 C -0.266 4.266 10 C 0.590 3.410 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.159 3.841 14 H 0.083 0.917 15 C -0.139 4.139 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.181 3.819 27 C -0.122 4.122 28 H 0.066 0.934 29 C -0.138 4.138 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.185 0.815 39 H 0.390 0.610 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 0.040 23.061 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.063 3.937 4 C -0.039 4.039 5 N -0.107 5.107 6 N -0.139 5.139 7 C -0.044 4.044 8 C -0.056 4.056 9 C -0.281 4.281 10 C 0.377 3.623 11 O -0.417 6.417 12 N -0.369 5.369 13 C 0.056 3.944 14 H 0.101 0.899 15 C -0.180 4.180 16 C 0.020 3.980 17 N -0.316 5.316 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.055 3.945 27 C -0.143 4.143 28 H 0.084 0.916 29 C -0.196 4.196 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.202 0.798 39 H 0.223 0.777 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.550 -0.193 24.074 24.125 hybrid contribution 1.165 0.392 -1.372 1.842 sum 2.714 0.200 22.702 22.865 Atomic orbital electron populations 1.22728 0.80484 1.02798 1.00128 1.87894 1.19926 1.26595 1.95487 1.20688 0.84820 0.85959 1.02188 1.21944 0.95667 0.97126 0.89170 1.77151 0.86377 1.24536 1.22596 1.48288 1.06312 1.54437 1.04874 1.22008 0.83768 1.03896 0.94728 1.23098 0.99050 0.98343 0.85133 1.20389 0.92036 1.20748 0.94952 1.17180 0.85806 0.76123 0.83231 1.90736 1.16458 1.50408 1.84104 1.46116 1.09305 1.74747 1.06738 1.21033 0.98797 0.96729 0.77836 0.89916 1.22387 1.01007 0.95676 0.98900 1.20879 0.92469 0.95873 0.88730 1.44098 1.50219 1.10725 1.26510 1.19148 1.33568 0.92773 0.92698 0.91713 1.25032 1.00574 0.97061 0.96971 1.70025 1.43930 1.08599 1.32125 0.86380 0.81480 0.77789 0.81183 1.21102 1.21662 1.20910 1.20799 0.99358 0.85902 0.88460 1.22159 0.98207 0.94641 0.99281 0.91552 1.21719 1.01604 0.96844 0.99468 0.89615 0.94267 0.93401 0.92236 0.89077 0.90137 0.88923 0.88841 0.79838 0.77652 0.92607 0.92448 0.96160 0.92647 0.93573 0.96132 0.89057 0.92943 0.92718 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.48 10.69 -35.23 -0.38 -5.85 16 3 C 0.14 1.89 5.97 36.01 0.22 2.11 16 4 C 0.13 1.81 6.89 -82.02 -0.57 1.25 16 5 N -0.28 -3.70 12.50 33.90 0.42 -3.28 16 6 N -0.36 -3.50 3.98 -67.60 -0.27 -3.77 16 7 C 0.10 0.45 11.44 59.85 0.68 1.13 16 8 C 0.09 0.91 10.99 -16.56 -0.18 0.73 16 9 C -0.27 -3.58 6.13 -105.07 -0.64 -4.23 16 10 C 0.59 9.25 7.78 -12.52 -0.10 9.15 16 11 O -0.54 -10.24 14.58 5.27 0.08 -10.16 16 12 N -0.72 -10.22 4.35 -54.84 -0.24 -10.46 16 13 C 0.16 2.77 1.88 -67.89 -0.13 2.64 16 14 H 0.08 1.65 7.57 -51.93 -0.39 1.25 16 15 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 16 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 17 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 18 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 19 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 22 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.18 4.20 4.59 -3.71 -0.02 4.19 16 27 C -0.12 -2.19 2.46 -90.50 -0.22 -2.41 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 C -0.14 -2.14 9.03 37.16 0.34 -1.80 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.29 6.55 -51.93 -0.34 0.95 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.18 1.03 7.46 -52.49 -0.39 0.64 16 39 H 0.39 4.36 7.23 -40.82 -0.30 4.07 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 2.36 6.03 -51.93 -0.31 2.05 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.04 0.55 7.36 -51.93 -0.38 0.17 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -34.87 396.35 -7.24 -42.11 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.00 Total: 1.89 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 0.09 Total: 7.66 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.02 Total: -58.02 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.30 Total: -16.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.87 -7.24 -42.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.337 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds