Wall clock time and date at job start Tue Mar 31 2020 19:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99721 * 2 1 4 4 C 1.50703 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98695 * 270.03963 * 4 3 2 6 6 N 1.39935 * 108.89430 * 179.97438 * 5 4 3 7 7 C 1.46499 * 125.75017 * 180.02562 * 6 5 4 8 8 C 1.34254 * 108.49442 * 359.72620 * 6 5 4 9 9 C 1.38047 * 107.41673 * 0.43246 * 8 6 5 10 10 C 1.47422 * 126.41545 * 179.82969 * 9 8 6 11 11 O 1.21603 * 120.00183 * 179.68892 * 10 9 8 12 12 N 1.34780 * 120.00135 * 359.96714 * 10 9 8 13 13 C 1.46503 * 120.00164 * 179.71949 * 12 10 9 14 14 H 1.09001 * 109.45941 * 325.03277 * 13 12 10 15 15 C 1.53042 * 109.45612 * 84.99815 * 13 12 10 16 16 C 1.53192 * 109.31142 * 181.38535 * 15 13 12 17 17 N 1.46926 * 108.77586 * 305.36680 * 16 15 13 18 18 C 1.36941 * 120.63299 * 233.63099 * 17 16 15 19 19 H 1.08002 * 119.99908 * 27.67740 * 18 17 16 20 20 C 1.38809 * 119.99974 * 207.67703 * 18 17 16 21 21 N 1.31622 * 119.99869 * 17.35362 * 20 18 17 22 22 Si 1.86800 * 120.00195 * 197.34883 * 20 18 17 23 23 H 1.48501 * 109.46858 * 59.99816 * 22 20 18 24 24 H 1.48495 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46933 * 300.00567 * 22 20 18 26 26 C 1.46929 * 118.74016 * 53.60897 * 17 16 15 27 27 C 1.53034 * 109.46116 * 205.06881 * 13 12 10 28 28 H 1.09002 * 109.49887 * 298.56757 * 27 13 12 29 29 C 1.52999 * 109.49850 * 58.66767 * 27 13 12 30 30 H 1.08998 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46857 * 299.99874 * 1 2 3 32 32 H 1.08999 * 109.47454 * 59.99775 * 1 2 3 33 33 H 1.08999 * 109.47293 * 60.00458 * 3 2 1 34 34 H 1.08999 * 109.47200 * 300.00183 * 3 2 1 35 35 H 1.08996 * 109.47385 * 89.97494 * 7 6 5 36 36 H 1.08999 * 109.47137 * 209.97225 * 7 6 5 37 37 H 1.09006 * 109.47092 * 329.96890 * 7 6 5 38 38 H 1.08000 * 126.29209 * 180.30240 * 8 6 5 39 39 H 0.96992 * 119.99639 * 359.71975 * 12 10 9 40 40 H 1.08992 * 109.50327 * 301.34073 * 15 13 12 41 41 H 1.09007 * 109.49407 * 61.43722 * 15 13 12 42 42 H 1.08993 * 109.58749 * 65.15477 * 16 15 13 43 43 H 1.09001 * 109.58517 * 185.58593 * 16 15 13 44 44 H 0.97003 * 119.99644 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58004 * 66.17613 * 26 17 16 46 46 H 1.08990 * 109.59013 * 186.60321 * 26 17 16 47 47 H 1.08991 * 109.47230 * 59.99709 * 29 27 13 48 48 H 1.08999 * 109.47237 * 180.02562 * 29 27 13 49 49 H 1.09003 * 109.46644 * 299.99589 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2770 1.1251 1.0546 6 7 5.6102 1.0193 0.6427 7 6 6.7743 0.9256 1.5271 8 6 5.6419 1.0114 -0.6994 9 6 4.3397 1.1214 -1.1442 10 6 3.8949 1.1577 -2.5493 11 8 2.7109 1.2520 -2.8100 12 7 4.8001 1.0806 -3.5449 13 6 4.3576 1.1105 -4.9412 14 1 3.4006 0.5963 -5.0299 15 6 4.1996 2.5636 -5.3949 16 6 3.7037 2.5907 -6.8441 17 7 4.6207 1.7962 -7.6726 18 6 5.1917 2.3349 -8.7946 19 1 5.3564 3.4004 -8.8582 20 6 5.5589 1.5117 -9.8502 21 7 5.0670 0.2939 -9.9369 22 14 6.7510 2.1320 -11.1477 23 1 8.0413 2.4879 -10.5046 24 1 6.9782 1.0693 -12.1597 25 1 6.1806 3.3324 -11.8104 26 6 4.9138 0.4126 -7.2743 27 6 5.3960 0.4098 -5.8202 28 1 6.3470 0.9382 -5.7514 29 6 5.5772 -1.0332 -5.3451 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 6.9812 -0.1219 1.7458 36 1 7.6396 1.3722 1.0372 37 1 6.5685 1.4571 2.4563 38 1 6.5243 0.9354 -1.3176 39 1 5.7445 1.0054 -3.3369 40 1 3.4772 3.0684 -4.7536 41 1 5.1619 3.0716 -5.3300 42 1 2.7021 2.1641 -6.8956 43 1 3.6841 3.6193 -7.2043 44 1 5.3239 -0.2815 -10.6743 45 1 4.0107 -0.1916 -7.3609 46 1 5.6924 0.0040 -7.9183 47 1 4.6262 -1.5610 -5.4156 48 1 6.3172 -1.5317 -5.9712 49 1 5.9177 -1.0347 -4.3096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942194463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:33 Heat of formation + Delta-G solvation = -7.501727 kcal Electronic energy + Delta-G solvation = -29917.741242 eV Core-core repulsion = 25881.369393 eV Total energy + Delta-G solvation = -4036.371850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50103 -40.69600 -38.99841 -38.69455 -36.08377 -34.58387 -34.00883 -33.46525 -31.92313 -30.66674 -29.89190 -27.55805 -27.51443 -26.87094 -25.96653 -24.22906 -23.08923 -22.47578 -21.31934 -21.24183 -20.54198 -18.98406 -18.39686 -17.54168 -17.23775 -16.93449 -16.69918 -16.57703 -16.43753 -16.12912 -15.70818 -15.54448 -15.43171 -15.04038 -14.72985 -14.54750 -14.39886 -14.15123 -13.67156 -13.55335 -13.42055 -13.24024 -13.14926 -13.06424 -12.88933 -12.82410 -12.51562 -12.42109 -12.35520 -12.01992 -11.97138 -11.80477 -11.70003 -11.51492 -11.22009 -10.93316 -10.54995 -10.52728 -10.52540 -10.00880 -9.62609 -8.68488 -7.85170 -5.30669 0.52786 0.87278 1.40371 1.50386 1.51714 1.59212 2.29706 2.43450 2.53911 3.01337 3.29712 3.39851 3.66798 3.70784 3.82511 3.99726 4.08627 4.17249 4.25423 4.27558 4.39235 4.41318 4.42213 4.46790 4.51987 4.58180 4.61779 4.73041 4.74307 4.78086 4.83136 4.84164 4.90086 4.98276 5.06689 5.13086 5.20250 5.26246 5.34836 5.38568 5.54196 5.63873 5.68731 5.77397 5.87653 6.14454 6.40932 6.43856 6.75584 7.16700 7.41469 7.86528 8.39681 9.21471 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002697 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.618278 B =10380.033673 C =11200.001175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.142 3.858 4 C 0.108 3.892 5 N -0.307 5.307 6 N -0.352 5.352 7 C 0.084 3.916 8 C 0.124 3.876 9 C -0.302 4.302 10 C 0.591 3.409 11 O -0.582 6.582 12 N -0.704 5.704 13 C 0.173 3.827 14 H 0.053 0.947 15 C -0.124 4.124 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.274 1.274 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.189 3.811 27 C -0.106 4.106 28 H 0.078 0.922 29 C -0.132 4.132 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.410 0.590 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.004 0.996 43 H 0.057 0.943 44 H 0.250 0.750 45 H -0.012 1.012 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.057 0.943 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 0.521 25.105 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.064 3.936 4 C -0.059 4.059 5 N -0.131 5.131 6 N -0.130 5.130 7 C -0.054 4.054 8 C -0.029 4.029 9 C -0.318 4.318 10 C 0.380 3.620 11 O -0.463 6.463 12 N -0.355 5.355 13 C 0.068 3.932 14 H 0.071 0.929 15 C -0.164 4.164 16 C 0.018 3.982 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.221 1.221 25 H -0.204 1.204 26 C 0.062 3.938 27 C -0.127 4.127 28 H 0.097 0.903 29 C -0.190 4.190 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.249 0.751 39 H 0.247 0.753 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.022 0.978 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.006 0.994 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.581 0.301 26.187 26.586 hybrid contribution 0.211 0.246 -1.933 1.960 sum 4.792 0.547 24.254 24.729 Atomic orbital electron populations 1.22909 0.78921 1.03893 1.00885 1.87843 1.21829 1.27373 1.95623 1.20655 0.85297 0.85624 1.02014 1.22085 0.96019 0.97903 0.89907 1.77085 0.88080 1.25292 1.22658 1.48737 1.06231 1.52330 1.05688 1.22498 0.82857 1.05382 0.94678 1.23692 0.98925 0.94871 0.85392 1.20236 0.93871 1.24360 0.93289 1.17508 0.85223 0.75032 0.84259 1.90719 1.18390 1.52332 1.84831 1.45743 1.10262 1.74547 1.04900 1.20602 0.97347 0.95603 0.79658 0.92917 1.22183 1.01393 0.96518 0.96326 1.20964 0.91376 0.95321 0.90525 1.44372 1.50921 1.11352 1.26617 1.19491 1.33348 0.93101 0.93503 0.91469 1.25801 1.02218 0.97318 0.99106 1.70194 1.45297 1.09797 1.32787 0.85330 0.79544 0.77002 0.78483 1.19990 1.22136 1.20435 1.20606 0.97051 0.84692 0.91420 1.21886 0.98303 0.96770 0.95704 0.90343 1.21675 1.01182 0.94624 1.01516 0.88400 0.92130 0.93989 0.90692 0.90826 0.88684 0.85355 0.88483 0.75141 0.75313 0.92250 0.91259 0.97809 0.92441 0.94054 0.99364 0.91851 0.94293 0.92417 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -11.97 10.69 -148.98 -1.59 -13.56 16 3 C 0.14 3.89 5.97 71.24 0.43 4.31 16 4 C 0.11 2.97 6.89 43.52 0.30 3.27 16 5 N -0.31 -7.53 12.50 -46.67 -0.58 -8.11 16 6 N -0.35 -5.59 3.98 -367.78 -1.46 -7.05 16 7 C 0.08 0.41 11.44 127.77 1.46 1.87 16 8 C 0.12 1.90 10.99 84.28 0.93 2.82 16 9 C -0.30 -7.62 6.13 -20.15 -0.12 -7.74 16 10 C 0.59 18.00 7.78 86.66 0.67 18.67 16 11 O -0.58 -22.66 14.58 -4.04 -0.06 -22.72 16 12 N -0.70 -18.46 4.35 -445.67 -1.94 -20.40 16 13 C 0.17 5.90 1.88 45.02 0.08 5.98 16 14 H 0.05 2.16 7.57 -2.39 -0.02 2.14 16 15 C -0.12 -4.46 5.65 30.67 0.17 -4.28 16 16 C 0.14 6.33 6.52 86.36 0.56 6.89 16 17 N -0.61 -30.86 2.99 -699.10 -2.09 -32.95 16 18 C -0.26 -14.49 9.59 84.03 0.81 -13.68 16 19 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 20 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 21 N -0.93 -55.11 11.19 21.65 0.24 -54.86 16 22 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.19 8.99 4.59 86.36 0.40 9.39 16 27 C -0.11 -3.71 2.46 -10.72 -0.03 -3.74 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 C -0.13 -3.86 9.03 71.98 0.65 -3.21 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.22 6.55 -2.39 -0.02 2.20 16 35 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.23 1.09 7.46 -2.91 -0.02 1.07 16 39 H 0.41 7.45 7.23 -92.71 -0.67 6.78 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 45 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 46 H 0.06 3.38 6.03 -2.39 -0.01 3.36 16 47 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.08 1.73 7.36 -2.39 -0.02 1.71 16 Total: -1.00 -80.05 396.35 2.79 -77.25 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.28 Total: 16.01 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 7.98 Total: 20.13 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.84 Total: -123.39 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.65 Total: -36.28 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -80.05 2.79 -77.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.750 kcal (2) G-P(sol) polarization free energy of solvation -80.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds