Wall clock time and date at job start Tue Mar 31 2020 19:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00281 * 2 1 4 4 C 1.50702 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.99075 * 270.17629 * 4 3 2 6 6 N 1.39926 * 108.89979 * 180.25961 * 5 4 3 7 7 C 1.46500 * 125.75517 * 179.73118 * 6 5 4 8 8 C 1.34259 * 108.49183 * 359.73802 * 6 5 4 9 9 C 1.38046 * 107.41656 * 359.97438 * 8 6 5 10 10 C 1.47430 * 126.41404 * 179.97438 * 9 8 6 11 11 O 1.21605 * 119.99808 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00120 * 0.03559 * 10 9 8 13 13 C 1.46494 * 120.00045 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46269 * 34.96868 * 13 12 10 15 15 C 1.53048 * 109.46146 * 275.00192 * 13 12 10 16 16 C 1.53193 * 109.31372 * 178.61396 * 15 13 12 17 17 N 1.46932 * 108.77300 * 54.62911 * 16 15 13 18 18 C 1.36943 * 120.62677 * 126.41734 * 17 16 15 19 19 H 1.07997 * 119.99795 * 207.66483 * 18 17 16 20 20 C 1.38810 * 119.99973 * 27.65952 * 18 17 16 21 21 N 1.31620 * 120.00304 * 17.36784 * 20 18 17 22 22 Si 1.86807 * 119.99906 * 197.36876 * 20 18 17 23 23 H 1.48498 * 109.46906 * 60.00365 * 22 20 18 24 24 H 1.48501 * 109.46786 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46618 * 300.00052 * 22 20 18 26 26 C 1.46925 * 118.74385 * 306.39277 * 17 16 15 27 27 C 1.53070 * 109.45629 * 154.78734 * 13 12 10 28 28 H 1.09001 * 109.38737 * 61.36293 * 27 13 12 29 29 C 1.53009 * 109.62153 * 301.26263 * 27 13 12 30 30 H 1.09002 * 109.46974 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46682 * 300.00291 * 1 2 3 33 33 H 1.09001 * 109.47368 * 59.99938 * 3 2 1 34 34 H 1.09004 * 109.47247 * 299.99795 * 3 2 1 35 35 H 1.09002 * 109.47214 * 270.00120 * 7 6 5 36 36 H 1.08998 * 109.47274 * 30.00218 * 7 6 5 37 37 H 1.09004 * 109.47235 * 150.00447 * 7 6 5 38 38 H 1.08003 * 126.29319 * 179.97438 * 8 6 5 39 39 H 0.96999 * 119.99987 * 359.97438 * 12 10 9 40 40 H 1.08995 * 109.49824 * 58.65982 * 15 13 12 41 41 H 1.08997 * 109.51797 * 298.57902 * 15 13 12 42 42 H 1.09003 * 109.58442 * 294.84953 * 16 15 13 43 43 H 1.08997 * 109.58823 * 174.41526 * 16 15 13 44 44 H 0.96993 * 120.00122 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58967 * 173.39751 * 26 17 16 46 46 H 1.08996 * 109.58350 * 293.68027 * 26 17 16 47 47 H 1.09001 * 109.46966 * 300.10333 * 29 27 13 48 48 H 1.09001 * 109.46777 * 60.10201 * 29 27 13 49 49 H 1.08991 * 109.47132 * 180.10272 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2761 1.1228 1.0564 6 7 5.6101 1.0243 0.6458 7 6 6.7741 0.9370 1.5311 8 6 5.6436 1.0235 -0.6964 9 6 4.3407 1.1201 -1.1422 10 6 3.8970 1.1550 -2.5477 11 8 2.7127 1.2431 -2.8094 12 7 4.8039 1.0892 -3.5426 13 6 4.3629 1.1233 -4.9392 14 1 3.4962 1.7781 -5.0305 15 6 3.9839 -0.2896 -5.3889 16 6 3.4906 -0.2447 -6.8386 17 7 4.5193 0.3974 -7.6684 18 6 5.0008 -0.2256 -8.7888 19 1 6.0022 -0.0164 -9.1347 20 6 4.2018 -1.1262 -9.4797 21 7 2.9002 -1.1354 -9.2848 22 14 4.9740 -2.3252 -10.6864 23 1 5.9502 -3.1865 -9.9720 24 1 3.9138 -3.1725 -11.2891 25 1 5.6715 -1.5692 -11.7574 26 6 5.0210 1.7207 -7.2737 27 6 5.4962 1.6572 -5.8187 28 1 6.3557 0.9908 -5.7455 29 6 5.8942 3.0582 -5.3499 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 7.1388 1.9403 1.7518 36 1 6.4884 0.4419 2.4592 37 1 7.5613 0.3640 1.0410 38 1 6.5274 0.9591 -1.3138 39 1 5.7485 1.0192 -3.3338 40 1 3.1922 -0.6756 -4.7470 41 1 4.8564 -0.9395 -5.3215 42 1 2.5663 0.3306 -6.8923 43 1 3.3136 -1.2590 -7.1959 44 1 2.3419 -1.7644 -9.7678 45 1 5.8536 2.0030 -7.9181 46 1 4.2222 2.4565 -7.3653 47 1 5.0338 3.7235 -5.4221 48 1 6.2323 3.0125 -4.3146 49 1 6.6999 3.4366 -5.9788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942194464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:40 Heat of formation + Delta-G solvation = 17.784100 kcal Electronic energy + Delta-G solvation = -29934.957678 eV Core-core repulsion = 25899.682304 eV Total energy + Delta-G solvation = -4035.275374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62749 -39.36262 -37.78985 -37.37355 -34.47278 -33.82394 -32.68475 -31.23057 -30.79564 -29.47365 -29.06064 -26.71338 -25.86838 -25.44748 -24.71229 -22.84299 -21.83962 -20.98537 -20.28302 -19.95190 -19.20452 -17.71860 -16.65802 -16.56335 -16.12634 -15.75904 -15.69632 -15.56886 -15.24099 -14.76047 -14.40815 -14.16335 -13.83710 -13.69264 -13.50883 -13.25777 -13.10353 -12.92555 -12.71712 -12.58110 -12.39048 -12.19606 -12.02297 -11.44891 -11.44714 -11.27205 -11.09369 -11.00522 -10.75704 -10.62763 -10.29041 -10.20440 -9.97638 -9.85429 -9.73392 -9.72960 -9.57490 -9.31260 -8.89646 -8.56176 -8.35000 -6.65054 -5.75158 -3.17773 1.33188 1.88034 2.06228 3.40033 3.46537 3.46995 3.48287 3.59626 3.91001 4.18808 4.37450 4.51799 4.68806 4.71693 4.93553 4.98291 5.10409 5.19726 5.29522 5.32666 5.35246 5.38598 5.44374 5.47554 5.53820 5.67534 5.68215 5.72738 5.96516 6.02331 6.14925 6.18767 6.29803 6.32290 6.46984 6.49683 6.52637 6.68651 6.72156 6.85906 7.00377 7.03998 7.10614 7.32685 7.43615 7.72714 7.82466 7.86711 8.48201 8.58257 9.24285 9.87919 10.44508 11.33257 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.002853 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.776871 B = 9811.128625 C =10764.726483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.142 3.858 4 C 0.129 3.871 5 N -0.283 5.283 6 N -0.360 5.360 7 C 0.097 3.903 8 C 0.094 3.906 9 C -0.265 4.265 10 C 0.590 3.410 11 O -0.537 6.537 12 N -0.721 5.721 13 C 0.160 3.840 14 H 0.082 0.918 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.155 3.845 27 C -0.115 4.115 28 H 0.070 0.930 29 C -0.141 4.141 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.184 0.816 39 H 0.389 0.611 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.089 0.911 44 H 0.255 0.745 45 H 0.056 0.944 46 H 0.020 0.980 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 6.464 21.815 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.063 3.937 4 C -0.039 4.039 5 N -0.106 5.106 6 N -0.139 5.139 7 C -0.044 4.044 8 C -0.057 4.057 9 C -0.280 4.280 10 C 0.376 3.624 11 O -0.414 6.414 12 N -0.370 5.370 13 C 0.057 3.943 14 H 0.100 0.900 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.028 3.972 27 C -0.136 4.136 28 H 0.088 0.912 29 C -0.199 4.199 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.201 0.799 39 H 0.222 0.778 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.789 6.229 22.876 24.405 hybrid contribution 0.874 -0.553 -1.294 1.657 sum 6.664 5.676 21.582 23.289 Atomic orbital electron populations 1.22732 0.80448 1.02860 1.00096 1.87901 1.19955 1.26507 1.95475 1.20687 0.84798 0.86043 1.02129 1.21954 0.95696 0.97078 0.89158 1.77149 0.86345 1.24542 1.22611 1.48285 1.06245 1.54548 1.04866 1.22003 0.83879 1.03724 0.94772 1.23085 0.99000 0.98494 0.85128 1.20395 0.91982 1.20692 0.94958 1.17174 0.85833 0.76174 0.83216 1.90750 1.16375 1.50245 1.84039 1.46101 1.09155 1.75001 1.06761 1.21028 0.97376 0.98227 0.77688 0.89975 1.22567 1.00663 0.95061 1.00439 1.20763 0.89578 0.99948 0.84947 1.44099 1.46058 1.14635 1.26686 1.19121 0.95985 1.20788 1.02569 0.91735 1.25039 0.94867 1.01603 0.98056 1.70027 1.02642 1.37591 1.44201 0.86384 0.78224 0.81321 0.80909 1.21076 1.21648 1.20932 1.20873 0.96893 0.88625 0.90802 1.21970 0.97644 0.95775 0.98174 0.91204 1.21760 1.01100 0.97049 0.99963 0.93366 0.89570 0.94306 0.92272 0.89113 0.90189 0.88840 0.88928 0.79877 0.77762 0.92632 0.92808 0.96160 0.89304 0.93532 0.92513 0.96235 0.92870 0.93547 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.68 10.69 -35.23 -0.38 -6.06 16 3 C 0.14 1.94 5.97 36.01 0.21 2.15 16 4 C 0.13 1.84 6.89 -82.02 -0.57 1.28 16 5 N -0.28 -3.74 12.50 33.90 0.42 -3.32 16 6 N -0.36 -3.52 3.98 -67.60 -0.27 -3.78 16 7 C 0.10 0.45 11.44 59.85 0.68 1.13 16 8 C 0.09 0.91 10.99 -16.56 -0.18 0.72 16 9 C -0.27 -3.61 6.13 -105.07 -0.64 -4.25 16 10 C 0.59 9.38 7.78 -12.52 -0.10 9.29 16 11 O -0.54 -10.46 14.58 5.27 0.08 -10.38 16 12 N -0.72 -10.22 4.36 -54.82 -0.24 -10.46 16 13 C 0.16 2.78 1.88 -67.87 -0.13 2.65 16 14 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 15 C -0.15 -2.98 5.66 -26.61 -0.15 -3.13 16 16 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 17 N -0.59 -14.76 3.00 -172.32 -0.52 -15.28 16 18 C -0.26 -6.96 9.59 -15.06 -0.14 -7.10 16 19 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 22 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.16 3.17 5.79 -3.71 -0.02 3.15 16 27 C -0.11 -1.87 2.46 -90.48 -0.22 -2.09 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 C -0.14 -1.83 9.03 37.16 0.34 -1.49 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.31 6.56 -51.93 -0.34 0.97 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.18 1.00 7.46 -52.48 -0.39 0.61 16 39 H 0.39 4.25 7.25 -40.82 -0.30 3.96 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.51 7.38 -51.93 -0.38 0.13 16 49 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -35.52 396.41 -7.25 -42.76 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.00 Total: 1.61 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.09 Total: 8.06 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.02 Total: -58.63 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.30 Total: -16.44 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.52 -7.25 -42.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.545 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds