Wall clock time and date at job start Tue Mar 31 2020 19:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00281 * 2 1 4 4 C 1.50702 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.99075 * 270.17629 * 4 3 2 6 6 N 1.39926 * 108.89979 * 180.25961 * 5 4 3 7 7 C 1.46500 * 125.75517 * 179.73118 * 6 5 4 8 8 C 1.34259 * 108.49183 * 359.73802 * 6 5 4 9 9 C 1.38046 * 107.41656 * 359.97438 * 8 6 5 10 10 C 1.47430 * 126.41404 * 179.97438 * 9 8 6 11 11 O 1.21605 * 119.99808 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00120 * 0.03559 * 10 9 8 13 13 C 1.46494 * 120.00045 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46269 * 34.96868 * 13 12 10 15 15 C 1.53048 * 109.46146 * 275.00192 * 13 12 10 16 16 C 1.53193 * 109.31372 * 178.61396 * 15 13 12 17 17 N 1.46932 * 108.77300 * 54.62911 * 16 15 13 18 18 C 1.36943 * 120.62677 * 126.41734 * 17 16 15 19 19 H 1.07997 * 119.99795 * 207.66483 * 18 17 16 20 20 C 1.38810 * 119.99973 * 27.65952 * 18 17 16 21 21 N 1.31620 * 120.00304 * 17.36784 * 20 18 17 22 22 Si 1.86807 * 119.99906 * 197.36876 * 20 18 17 23 23 H 1.48498 * 109.46906 * 60.00365 * 22 20 18 24 24 H 1.48501 * 109.46786 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46618 * 300.00052 * 22 20 18 26 26 C 1.46925 * 118.74385 * 306.39277 * 17 16 15 27 27 C 1.53070 * 109.45629 * 154.78734 * 13 12 10 28 28 H 1.09001 * 109.38737 * 61.36293 * 27 13 12 29 29 C 1.53009 * 109.62153 * 301.26263 * 27 13 12 30 30 H 1.09002 * 109.46974 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46682 * 300.00291 * 1 2 3 33 33 H 1.09001 * 109.47368 * 59.99938 * 3 2 1 34 34 H 1.09004 * 109.47247 * 299.99795 * 3 2 1 35 35 H 1.09002 * 109.47214 * 270.00120 * 7 6 5 36 36 H 1.08998 * 109.47274 * 30.00218 * 7 6 5 37 37 H 1.09004 * 109.47235 * 150.00447 * 7 6 5 38 38 H 1.08003 * 126.29319 * 179.97438 * 8 6 5 39 39 H 0.96999 * 119.99987 * 359.97438 * 12 10 9 40 40 H 1.08995 * 109.49824 * 58.65982 * 15 13 12 41 41 H 1.08997 * 109.51797 * 298.57902 * 15 13 12 42 42 H 1.09003 * 109.58442 * 294.84953 * 16 15 13 43 43 H 1.08997 * 109.58823 * 174.41526 * 16 15 13 44 44 H 0.96993 * 120.00122 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58967 * 173.39751 * 26 17 16 46 46 H 1.08996 * 109.58350 * 293.68027 * 26 17 16 47 47 H 1.09001 * 109.46966 * 300.10333 * 29 27 13 48 48 H 1.09001 * 109.46777 * 60.10201 * 29 27 13 49 49 H 1.08991 * 109.47132 * 180.10272 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2761 1.1228 1.0564 6 7 5.6101 1.0243 0.6458 7 6 6.7741 0.9370 1.5311 8 6 5.6436 1.0235 -0.6964 9 6 4.3407 1.1201 -1.1422 10 6 3.8970 1.1550 -2.5477 11 8 2.7127 1.2431 -2.8094 12 7 4.8039 1.0892 -3.5426 13 6 4.3629 1.1233 -4.9392 14 1 3.4962 1.7781 -5.0305 15 6 3.9839 -0.2896 -5.3889 16 6 3.4906 -0.2447 -6.8386 17 7 4.5193 0.3974 -7.6684 18 6 5.0008 -0.2256 -8.7888 19 1 6.0022 -0.0164 -9.1347 20 6 4.2018 -1.1262 -9.4797 21 7 2.9002 -1.1354 -9.2848 22 14 4.9740 -2.3252 -10.6864 23 1 5.9502 -3.1865 -9.9720 24 1 3.9138 -3.1725 -11.2891 25 1 5.6715 -1.5692 -11.7574 26 6 5.0210 1.7207 -7.2737 27 6 5.4962 1.6572 -5.8187 28 1 6.3557 0.9908 -5.7455 29 6 5.8942 3.0582 -5.3499 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 7.1388 1.9403 1.7518 36 1 6.4884 0.4419 2.4592 37 1 7.5613 0.3640 1.0410 38 1 6.5274 0.9591 -1.3138 39 1 5.7485 1.0192 -3.3338 40 1 3.1922 -0.6756 -4.7470 41 1 4.8564 -0.9395 -5.3215 42 1 2.5663 0.3306 -6.8923 43 1 3.3136 -1.2590 -7.1959 44 1 2.3419 -1.7644 -9.7678 45 1 5.8536 2.0030 -7.9181 46 1 4.2222 2.4565 -7.3653 47 1 5.0338 3.7235 -5.4221 48 1 6.2323 3.0125 -4.3146 49 1 6.6999 3.4366 -5.9788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942194464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:39 Heat of formation + Delta-G solvation = -7.954441 kcal Electronic energy + Delta-G solvation = -29936.073785 eV Core-core repulsion = 25899.682304 eV Total energy + Delta-G solvation = -4036.391481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50484 -40.69917 -39.00362 -38.70426 -36.13150 -34.58971 -34.20461 -32.89711 -32.18137 -30.85717 -29.89992 -27.56620 -27.37713 -26.87431 -25.96038 -24.18406 -23.08111 -22.61500 -21.32506 -21.26414 -20.52518 -18.88704 -18.45426 -17.55287 -17.20721 -16.98836 -16.69171 -16.58569 -16.45737 -16.13274 -15.69177 -15.55628 -15.46383 -15.05445 -14.75993 -14.50623 -14.40571 -14.16237 -13.68790 -13.56720 -13.45415 -13.24072 -13.07471 -13.02183 -12.96505 -12.68555 -12.54011 -12.36863 -12.30338 -12.04349 -12.01588 -11.96618 -11.62299 -11.52865 -11.24195 -10.93141 -10.56029 -10.53609 -10.53278 -10.01467 -9.62752 -8.69234 -7.85172 -5.31291 0.52758 0.86655 1.40178 1.48674 1.51617 1.58340 2.27929 2.44602 2.53337 3.00856 3.30327 3.39330 3.66400 3.70450 3.80491 3.99252 4.09671 4.16089 4.22220 4.26460 4.40006 4.40912 4.43635 4.47516 4.50431 4.56909 4.65075 4.73751 4.77043 4.77937 4.82094 4.84300 4.90592 4.97077 5.08198 5.16016 5.19866 5.26055 5.34430 5.43370 5.56195 5.63600 5.66341 5.72861 5.87842 6.13740 6.39930 6.43406 6.75494 7.14964 7.42140 7.86437 8.39405 9.21671 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.002853 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.776871 B = 9811.128625 C =10764.726483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.142 3.858 4 C 0.107 3.893 5 N -0.307 5.307 6 N -0.351 5.351 7 C 0.084 3.916 8 C 0.125 3.875 9 C -0.303 4.303 10 C 0.589 3.411 11 O -0.584 6.584 12 N -0.703 5.703 13 C 0.174 3.826 14 H 0.054 0.946 15 C -0.131 4.131 16 C 0.184 3.816 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.075 0.925 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.273 1.273 26 C 0.149 3.851 27 C -0.098 4.098 28 H 0.083 0.917 29 C -0.133 4.133 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.234 0.766 39 H 0.411 0.589 40 H 0.042 0.958 41 H 0.062 0.938 42 H -0.014 1.014 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.066 0.934 46 H 0.007 0.993 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 6.924 23.544 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.064 3.936 4 C -0.060 4.060 5 N -0.131 5.131 6 N -0.130 5.130 7 C -0.054 4.054 8 C -0.027 4.027 9 C -0.318 4.318 10 C 0.378 3.622 11 O -0.464 6.464 12 N -0.354 5.354 13 C 0.069 3.931 14 H 0.072 0.928 15 C -0.171 4.171 16 C 0.058 3.942 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.092 0.908 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.198 1.198 26 C 0.023 3.977 27 C -0.119 4.119 28 H 0.101 0.899 29 C -0.191 4.191 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.004 0.996 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.025 0.975 47 H 0.061 0.939 48 H 0.093 0.907 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.003 6.717 24.664 27.450 hybrid contribution -0.378 -0.655 -1.751 1.907 sum 9.625 6.062 22.914 25.582 Atomic orbital electron populations 1.22905 0.78948 1.03856 1.00881 1.87847 1.21816 1.27468 1.95618 1.20664 0.85395 0.85596 1.01980 1.22076 0.95985 0.97954 0.89969 1.77081 0.88106 1.25285 1.22621 1.48743 1.06145 1.52357 1.05717 1.22504 0.82688 1.05685 0.94532 1.23696 0.98841 0.94847 0.85366 1.20235 0.93908 1.24436 0.93206 1.17555 0.85251 0.75023 0.84383 1.90734 1.18518 1.52337 1.84840 1.45712 1.10152 1.74645 1.04871 1.20610 0.97240 0.95440 0.79851 0.92790 1.22312 1.00252 0.97451 0.97114 1.20448 0.88868 0.97326 0.87605 1.44343 1.45940 1.16432 1.26459 1.19543 0.96308 1.20572 1.02750 0.90761 1.25869 0.95203 1.03556 1.00346 1.70211 1.04121 1.38435 1.45736 0.85313 0.77116 0.78978 0.78874 1.20171 1.22510 1.19818 1.21087 0.96614 0.86109 0.93871 1.21760 0.96979 0.98450 0.94704 0.89859 1.21709 1.01299 0.94099 1.01959 0.94097 0.88520 0.91963 0.90598 0.90932 0.88195 0.88780 0.85467 0.74950 0.75195 0.93973 0.91975 0.99563 0.92745 0.94228 0.91578 0.97504 0.93854 0.90660 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -12.67 10.69 -148.98 -1.59 -14.26 16 3 C 0.14 4.03 5.97 71.24 0.42 4.45 16 4 C 0.11 3.02 6.89 43.52 0.30 3.32 16 5 N -0.31 -7.64 12.50 -46.68 -0.58 -8.23 16 6 N -0.35 -5.60 3.98 -367.77 -1.46 -7.07 16 7 C 0.08 0.40 11.44 127.77 1.46 1.86 16 8 C 0.13 1.91 10.99 84.28 0.93 2.84 16 9 C -0.30 -7.79 6.13 -20.15 -0.12 -7.91 16 10 C 0.59 18.50 7.78 86.66 0.67 19.17 16 11 O -0.58 -23.77 14.58 -4.05 -0.06 -23.83 16 12 N -0.70 -18.53 4.36 -445.62 -1.94 -20.47 16 13 C 0.17 5.95 1.88 45.03 0.08 6.03 16 14 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 15 C -0.13 -5.43 5.66 30.68 0.17 -5.25 16 16 C 0.18 9.50 5.31 86.36 0.46 9.96 16 17 N -0.61 -30.86 3.00 -699.09 -2.10 -32.95 16 18 C -0.26 -14.34 9.59 84.03 0.81 -13.53 16 19 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 20 C -0.05 -3.09 4.91 84.86 0.42 -2.68 16 21 N -0.94 -57.37 11.19 21.65 0.24 -57.12 16 22 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.15 6.01 5.79 86.36 0.50 6.51 16 27 C -0.10 -2.98 2.46 -10.70 -0.03 -3.01 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 C -0.13 -2.98 9.03 71.99 0.65 -2.33 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.27 6.56 -2.38 -0.02 2.25 16 35 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 37 H 0.13 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.23 0.98 7.46 -2.91 -0.02 0.96 16 39 H 0.41 7.19 7.25 -92.71 -0.67 6.52 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.05 3.16 6.04 -2.39 -0.01 3.15 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 46 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 1.29 7.38 -2.39 -0.02 1.27 16 49 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -83.47 396.41 2.79 -80.68 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.28 Total: 14.77 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.98 Total: 21.37 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.84 Total: -125.85 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.65 Total: -38.08 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -83.47 2.79 -80.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.728 kcal (2) G-P(sol) polarization free energy of solvation -83.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds