Wall clock time and date at job start Tue Mar 31 2020 19:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99906 * 2 1 4 4 C 1.50697 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.30447 * 125.98868 * 269.99959 * 4 3 2 6 6 N 1.39934 * 108.89937 * 179.97438 * 5 4 3 7 7 C 1.46498 * 125.75574 * 180.02562 * 6 5 4 8 8 C 1.34258 * 108.48830 * 359.74936 * 6 5 4 9 9 C 1.38042 * 107.41825 * 0.39533 * 8 6 5 10 10 C 1.47431 * 126.41360 * 179.87168 * 9 8 6 11 11 O 1.21609 * 120.00005 * 179.68766 * 10 9 8 12 12 N 1.34777 * 120.00052 * 359.68556 * 10 9 8 13 13 C 1.46502 * 119.99805 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.45095 * 325.03619 * 13 12 10 15 15 C 1.53042 * 109.45693 * 85.00544 * 13 12 10 16 16 C 1.53187 * 109.31570 * 58.65131 * 15 13 12 17 17 N 1.46931 * 108.77713 * 54.63511 * 16 15 13 18 18 C 1.36939 * 120.63362 * 126.40875 * 17 16 15 19 19 H 1.08000 * 119.99962 * 207.67081 * 18 17 16 20 20 C 1.38809 * 119.99652 * 27.66906 * 18 17 16 21 21 N 1.31626 * 120.00360 * 17.36552 * 20 18 17 22 22 Si 1.86803 * 120.00115 * 197.36723 * 20 18 17 23 23 H 1.48495 * 109.47230 * 89.99720 * 22 20 18 24 24 H 1.48501 * 109.47350 * 210.00184 * 22 20 18 25 25 H 1.48504 * 109.46763 * 329.99732 * 22 20 18 26 26 C 1.46926 * 118.73486 * 306.39632 * 17 16 15 27 27 C 1.53041 * 109.45819 * 205.06705 * 13 12 10 28 28 H 1.09003 * 109.49413 * 181.39536 * 27 13 12 29 29 C 1.53000 * 109.49699 * 61.30390 * 27 13 12 30 30 H 1.09003 * 109.47382 * 300.00374 * 1 2 3 31 31 H 1.09006 * 109.47473 * 60.00357 * 1 2 3 32 32 H 1.09004 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47370 * 59.99327 * 3 2 1 34 34 H 1.09002 * 109.47072 * 299.99844 * 3 2 1 35 35 H 1.08996 * 109.47171 * 89.97505 * 7 6 5 36 36 H 1.09002 * 109.47083 * 209.97566 * 7 6 5 37 37 H 1.09005 * 109.46922 * 329.97802 * 7 6 5 38 38 H 1.08003 * 126.28949 * 180.23996 * 8 6 5 39 39 H 0.96997 * 120.00092 * 0.02562 * 12 10 9 40 40 H 1.09007 * 109.49733 * 298.69968 * 15 13 12 41 41 H 1.09001 * 109.49748 * 178.60625 * 15 13 12 42 42 H 1.09003 * 109.59124 * 294.85217 * 16 15 13 43 43 H 1.09000 * 109.59168 * 174.41813 * 16 15 13 44 44 H 0.96994 * 119.99972 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.58210 * 173.39460 * 26 17 16 46 46 H 1.09000 * 109.58519 * 293.81100 * 26 17 16 47 47 H 1.09002 * 109.46958 * 300.15694 * 29 27 13 48 48 H 1.09000 * 109.47086 * 60.15513 * 29 27 13 49 49 H 1.09002 * 109.47060 * 180.16078 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2762 1.1263 1.0565 6 7 5.6097 1.0201 0.6458 7 6 6.7732 0.9274 1.5311 8 6 5.6424 1.0113 -0.6963 9 6 4.3405 1.1202 -1.1422 10 6 3.8968 1.1544 -2.5477 11 8 2.7129 1.2480 -2.8094 12 7 4.8032 1.0820 -3.5425 13 6 4.3621 1.1154 -4.9392 14 1 3.4061 0.6000 -5.0303 15 6 4.2022 2.5696 -5.3886 16 6 5.5390 3.3000 -5.2265 17 7 6.5763 2.5546 -5.9526 18 6 7.3634 3.1802 -6.8823 19 1 7.7837 2.6158 -7.7016 20 6 7.6211 4.5396 -6.7715 21 7 7.4133 5.1579 -5.6282 22 14 8.2627 5.4918 -8.2450 23 1 7.1181 6.0251 -9.0264 24 1 9.1096 6.6180 -7.7761 25 1 9.0707 4.5891 -9.1039 26 6 6.7531 1.1252 -5.6620 27 6 5.4028 0.4193 -5.8193 28 1 5.0872 0.4656 -6.8616 29 6 5.5380 -1.0432 -5.3905 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 6.9799 -0.1200 1.7510 36 1 7.6388 1.3735 1.0414 37 1 6.5665 1.4597 2.4596 38 1 6.5254 0.9357 -1.3137 39 1 5.7474 1.0070 -3.3338 40 1 3.4441 3.0583 -4.7765 41 1 3.8980 2.5957 -6.4350 42 1 5.8002 3.3539 -4.1696 43 1 5.4576 4.3065 -5.6368 44 1 7.5937 6.1078 -5.5508 45 1 7.4729 0.6969 -6.3597 46 1 7.1133 1.0019 -4.6407 47 1 5.8522 -1.0885 -4.3477 48 1 4.5769 -1.5450 -5.5025 49 1 6.2813 -1.5378 -6.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942194467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:50 Heat of formation + Delta-G solvation = 19.101182 kcal Electronic energy + Delta-G solvation = -30508.622359 eV Core-core repulsion = 26473.404097 eV Total energy + Delta-G solvation = -4035.218261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47432 -39.45421 -37.76368 -37.32451 -34.22252 -33.67391 -32.54800 -31.21707 -30.69290 -29.54014 -28.97023 -26.63433 -25.86703 -25.39653 -24.88597 -22.76583 -21.91321 -21.05569 -20.53286 -19.75335 -18.44838 -17.75397 -16.66594 -16.51163 -16.10785 -15.67485 -15.56568 -15.22210 -15.05154 -14.80932 -14.49010 -14.05399 -13.91836 -13.67653 -13.50854 -13.23010 -13.02492 -12.95819 -12.67557 -12.50478 -12.33083 -12.13178 -12.02669 -11.46184 -11.42142 -11.35433 -11.07441 -10.94620 -10.78315 -10.71107 -10.33024 -10.18899 -10.03187 -9.78877 -9.71653 -9.57224 -9.40373 -9.31998 -8.75416 -8.48783 -8.38280 -6.69284 -5.80789 -3.23530 1.50880 2.01121 2.22610 3.36539 3.43961 3.44263 3.66574 3.67312 4.01495 4.32371 4.47356 4.58160 4.82797 4.89190 5.06617 5.15069 5.17137 5.25020 5.31736 5.37064 5.38989 5.41870 5.46663 5.52248 5.54499 5.64191 5.65439 5.83792 5.97646 6.02215 6.11097 6.20237 6.30583 6.33737 6.42021 6.48638 6.67883 6.68424 6.70834 6.80925 6.91452 7.09667 7.13287 7.39218 7.47697 7.68106 7.78299 8.01134 8.42565 8.70197 9.19025 9.82461 10.38407 11.26942 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003257 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.381699 B = 8596.105753 C = 9213.631330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.143 3.857 4 C 0.128 3.872 5 N -0.285 5.285 6 N -0.359 5.359 7 C 0.097 3.903 8 C 0.099 3.901 9 C -0.266 4.266 10 C 0.593 3.407 11 O -0.548 6.548 12 N -0.709 5.709 13 C 0.163 3.837 14 H 0.074 0.926 15 C -0.154 4.154 16 C 0.175 3.825 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.153 3.847 27 C -0.119 4.119 28 H 0.081 0.919 29 C -0.141 4.141 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.185 0.815 39 H 0.396 0.604 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.253 0.747 45 H 0.056 0.944 46 H 0.011 0.989 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -10.500 12.313 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.065 3.935 4 C -0.040 4.040 5 N -0.108 5.108 6 N -0.138 5.138 7 C -0.044 4.044 8 C -0.051 4.051 9 C -0.281 4.281 10 C 0.380 3.620 11 O -0.426 6.426 12 N -0.360 5.360 13 C 0.059 3.941 14 H 0.092 0.908 15 C -0.194 4.194 16 C 0.049 3.951 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.140 4.140 28 H 0.099 0.901 29 C -0.199 4.199 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.202 0.798 39 H 0.231 0.769 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.557 -10.426 13.517 17.952 hybrid contribution 0.864 0.808 -1.421 1.849 sum -4.694 -9.618 12.096 16.151 Atomic orbital electron populations 1.22711 0.80692 1.02616 1.00087 1.87888 1.19751 1.26808 1.95486 1.20679 0.84935 0.85739 1.02172 1.21885 0.95538 0.97343 0.89213 1.77114 0.86441 1.24653 1.22634 1.48265 1.06239 1.54443 1.04896 1.22012 0.83937 1.03741 0.94714 1.23145 0.99146 0.97761 0.85075 1.20328 0.92026 1.20911 0.94871 1.17132 0.85656 0.75891 0.83303 1.90698 1.16596 1.51151 1.84191 1.45916 1.09727 1.74199 1.06142 1.20852 0.97076 0.96960 0.79208 0.90838 1.22561 1.00979 0.95412 1.00465 1.20720 0.83722 0.96029 0.94612 1.44081 1.37347 1.03830 1.46132 1.19179 1.25257 0.92054 1.01786 0.91699 1.25018 0.99805 0.98293 0.96405 1.70036 1.52317 1.09709 1.22453 0.86309 0.78354 0.79690 0.82501 1.21445 1.21853 1.20477 1.20890 0.92947 0.86264 0.97245 1.21951 0.98400 0.94024 0.99644 0.90061 1.21757 1.01075 0.96128 1.00923 0.94298 0.93516 0.89750 0.92271 0.89080 0.90230 0.88775 0.88886 0.79789 0.76887 0.92640 0.91927 0.96390 0.89692 0.93688 0.92586 0.97104 0.93123 0.93233 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.67 10.69 -35.23 -0.38 -6.05 16 3 C 0.14 2.06 5.97 36.00 0.21 2.28 16 4 C 0.13 2.00 6.89 -82.02 -0.57 1.44 16 5 N -0.29 -4.21 12.50 33.89 0.42 -3.79 16 6 N -0.36 -4.28 3.98 -67.60 -0.27 -4.54 16 7 C 0.10 0.66 11.44 59.85 0.68 1.34 16 8 C 0.10 1.23 10.99 -16.56 -0.18 1.05 16 9 C -0.27 -4.13 6.13 -105.07 -0.64 -4.77 16 10 C 0.59 10.23 7.78 -12.52 -0.10 10.13 16 11 O -0.55 -10.79 14.58 5.27 0.08 -10.71 16 12 N -0.71 -11.42 3.58 -54.84 -0.20 -11.61 16 13 C 0.16 2.81 2.21 -67.89 -0.15 2.66 16 14 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 15 C -0.15 -3.05 5.77 -26.61 -0.15 -3.20 16 16 C 0.17 4.06 5.05 -3.71 -0.02 4.04 16 17 N -0.59 -13.96 3.00 -172.32 -0.52 -14.48 16 18 C -0.25 -6.68 9.59 -15.06 -0.14 -6.83 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 22 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.15 2.91 5.50 -3.71 -0.02 2.89 16 27 C -0.12 -1.93 2.67 -90.50 -0.24 -2.18 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 C -0.14 -1.86 9.06 37.16 0.34 -1.53 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.39 6.56 -51.93 -0.34 1.05 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.19 1.70 7.46 -52.48 -0.39 1.30 16 39 H 0.40 5.89 5.65 -40.82 -0.23 5.66 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 43 H 0.08 2.27 6.04 -51.93 -0.31 1.96 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.01 0.20 6.64 -51.93 -0.34 -0.14 16 47 H 0.05 0.64 7.53 -51.93 -0.39 0.25 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -33.67 392.41 -7.15 -40.82 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.84 Total: 4.20 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 0.05 Total: 8.83 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.06 Total: -59.28 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.30 Total: -16.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.67 -7.15 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.923 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds