Wall clock time and date at job start Tue Mar 31 2020 19:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99906 * 2 1 4 4 C 1.50697 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.30447 * 125.98868 * 269.99959 * 4 3 2 6 6 N 1.39934 * 108.89937 * 179.97438 * 5 4 3 7 7 C 1.46498 * 125.75574 * 180.02562 * 6 5 4 8 8 C 1.34258 * 108.48830 * 359.74936 * 6 5 4 9 9 C 1.38042 * 107.41825 * 0.39533 * 8 6 5 10 10 C 1.47431 * 126.41360 * 179.87168 * 9 8 6 11 11 O 1.21609 * 120.00005 * 179.68766 * 10 9 8 12 12 N 1.34777 * 120.00052 * 359.68556 * 10 9 8 13 13 C 1.46502 * 119.99805 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.45095 * 325.03619 * 13 12 10 15 15 C 1.53042 * 109.45693 * 85.00544 * 13 12 10 16 16 C 1.53187 * 109.31570 * 58.65131 * 15 13 12 17 17 N 1.46931 * 108.77713 * 54.63511 * 16 15 13 18 18 C 1.36939 * 120.63362 * 126.40875 * 17 16 15 19 19 H 1.08000 * 119.99962 * 207.67081 * 18 17 16 20 20 C 1.38809 * 119.99652 * 27.66906 * 18 17 16 21 21 N 1.31626 * 120.00360 * 17.36552 * 20 18 17 22 22 Si 1.86803 * 120.00115 * 197.36723 * 20 18 17 23 23 H 1.48495 * 109.47230 * 89.99720 * 22 20 18 24 24 H 1.48501 * 109.47350 * 210.00184 * 22 20 18 25 25 H 1.48504 * 109.46763 * 329.99732 * 22 20 18 26 26 C 1.46926 * 118.73486 * 306.39632 * 17 16 15 27 27 C 1.53041 * 109.45819 * 205.06705 * 13 12 10 28 28 H 1.09003 * 109.49413 * 181.39536 * 27 13 12 29 29 C 1.53000 * 109.49699 * 61.30390 * 27 13 12 30 30 H 1.09003 * 109.47382 * 300.00374 * 1 2 3 31 31 H 1.09006 * 109.47473 * 60.00357 * 1 2 3 32 32 H 1.09004 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47370 * 59.99327 * 3 2 1 34 34 H 1.09002 * 109.47072 * 299.99844 * 3 2 1 35 35 H 1.08996 * 109.47171 * 89.97505 * 7 6 5 36 36 H 1.09002 * 109.47083 * 209.97566 * 7 6 5 37 37 H 1.09005 * 109.46922 * 329.97802 * 7 6 5 38 38 H 1.08003 * 126.28949 * 180.23996 * 8 6 5 39 39 H 0.96997 * 120.00092 * 0.02562 * 12 10 9 40 40 H 1.09007 * 109.49733 * 298.69968 * 15 13 12 41 41 H 1.09001 * 109.49748 * 178.60625 * 15 13 12 42 42 H 1.09003 * 109.59124 * 294.85217 * 16 15 13 43 43 H 1.09000 * 109.59168 * 174.41813 * 16 15 13 44 44 H 0.96994 * 119.99972 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.58210 * 173.39460 * 26 17 16 46 46 H 1.09000 * 109.58519 * 293.81100 * 26 17 16 47 47 H 1.09002 * 109.46958 * 300.15694 * 29 27 13 48 48 H 1.09000 * 109.47086 * 60.15513 * 29 27 13 49 49 H 1.09002 * 109.47060 * 180.16078 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2762 1.1263 1.0565 6 7 5.6097 1.0201 0.6458 7 6 6.7732 0.9274 1.5311 8 6 5.6424 1.0113 -0.6963 9 6 4.3405 1.1202 -1.1422 10 6 3.8968 1.1544 -2.5477 11 8 2.7129 1.2480 -2.8094 12 7 4.8032 1.0820 -3.5425 13 6 4.3621 1.1154 -4.9392 14 1 3.4061 0.6000 -5.0303 15 6 4.2022 2.5696 -5.3886 16 6 5.5390 3.3000 -5.2265 17 7 6.5763 2.5546 -5.9526 18 6 7.3634 3.1802 -6.8823 19 1 7.7837 2.6158 -7.7016 20 6 7.6211 4.5396 -6.7715 21 7 7.4133 5.1579 -5.6282 22 14 8.2627 5.4918 -8.2450 23 1 7.1181 6.0251 -9.0264 24 1 9.1096 6.6180 -7.7761 25 1 9.0707 4.5891 -9.1039 26 6 6.7531 1.1252 -5.6620 27 6 5.4028 0.4193 -5.8193 28 1 5.0872 0.4656 -6.8616 29 6 5.5380 -1.0432 -5.3905 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 6.9799 -0.1200 1.7510 36 1 7.6388 1.3735 1.0414 37 1 6.5665 1.4597 2.4596 38 1 6.5254 0.9357 -1.3137 39 1 5.7474 1.0070 -3.3338 40 1 3.4441 3.0583 -4.7765 41 1 3.8980 2.5957 -6.4350 42 1 5.8002 3.3539 -4.1696 43 1 5.4576 4.3065 -5.6368 44 1 7.5937 6.1078 -5.5508 45 1 7.4729 0.6969 -6.3597 46 1 7.1133 1.0019 -4.6407 47 1 5.8522 -1.0885 -4.3477 48 1 4.5769 -1.5450 -5.5025 49 1 6.2813 -1.5378 -6.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942194467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:49 Heat of formation + Delta-G solvation = -3.562415 kcal Electronic energy + Delta-G solvation = -30509.605126 eV Core-core repulsion = 26473.404097 eV Total energy + Delta-G solvation = -4036.201028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.51352 -40.85151 -38.95158 -38.65261 -35.92784 -34.59227 -33.98369 -32.85212 -32.21099 -30.87676 -29.89529 -27.53894 -27.34961 -26.94481 -26.03039 -24.08311 -23.37444 -22.65068 -21.67444 -20.88392 -19.95608 -18.94835 -18.47306 -17.53386 -17.22325 -16.80520 -16.68388 -16.51006 -16.33739 -16.11610 -15.89116 -15.62966 -15.32938 -15.10655 -14.79169 -14.48991 -14.40309 -14.17526 -13.68115 -13.52581 -13.44944 -13.24116 -13.11008 -13.06613 -12.94250 -12.65659 -12.50401 -12.34708 -12.32060 -12.14768 -11.99266 -11.90663 -11.61623 -11.41680 -11.06797 -10.94929 -10.55562 -10.52080 -10.49287 -9.99808 -9.62623 -8.62571 -7.83462 -5.27637 0.50414 0.87894 1.38202 1.47987 1.51062 1.57941 2.36744 2.44778 2.53859 3.00160 3.31483 3.39565 3.68546 3.71911 3.84420 3.98392 4.14659 4.16551 4.18429 4.26472 4.40415 4.41659 4.44440 4.48646 4.53982 4.59714 4.65973 4.70591 4.72356 4.80722 4.83492 4.84358 4.89189 5.04487 5.08887 5.16023 5.24205 5.27538 5.35739 5.48419 5.57097 5.66217 5.70734 5.79523 5.84765 6.15361 6.42116 6.42536 6.73439 7.18558 7.39891 7.90690 8.41526 9.21825 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.003257 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.381699 B = 8596.105753 C = 9213.631330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.145 3.855 4 C 0.110 3.890 5 N -0.304 5.304 6 N -0.352 5.352 7 C 0.084 3.916 8 C 0.118 3.882 9 C -0.301 4.301 10 C 0.592 3.408 11 O -0.580 6.580 12 N -0.701 5.701 13 C 0.171 3.829 14 H 0.074 0.926 15 C -0.143 4.143 16 C 0.189 3.811 17 N -0.607 5.607 18 C -0.257 4.257 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.931 5.931 22 Si 0.960 3.040 23 H -0.291 1.291 24 H -0.298 1.298 25 H -0.267 1.267 26 C 0.151 3.849 27 C -0.107 4.107 28 H 0.076 0.924 29 C -0.133 4.133 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.218 0.782 39 H 0.403 0.597 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.004 0.996 43 H 0.045 0.955 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.027 0.973 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 -12.375 12.757 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C 0.067 3.933 4 C -0.057 4.057 5 N -0.128 5.128 6 N -0.130 5.130 7 C -0.054 4.054 8 C -0.035 4.035 9 C -0.316 4.316 10 C 0.381 3.619 11 O -0.461 6.461 12 N -0.352 5.352 13 C 0.066 3.934 14 H 0.092 0.908 15 C -0.183 4.183 16 C 0.064 3.936 17 N -0.330 5.330 18 C -0.387 4.387 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.789 3.211 23 H -0.219 1.219 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.026 3.974 27 C -0.127 4.127 28 H 0.094 0.906 29 C -0.190 4.190 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.235 0.765 39 H 0.240 0.760 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.022 0.978 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.268 -12.344 13.982 19.133 hybrid contribution 0.501 1.355 -1.489 2.074 sum -3.767 -10.989 12.493 17.060 Atomic orbital electron populations 1.22923 0.78857 1.03974 1.00880 1.87842 1.21881 1.27092 1.95621 1.20622 0.84922 0.85724 1.02025 1.22103 0.96169 0.97846 0.89630 1.77048 0.87838 1.25257 1.22670 1.48706 1.06366 1.52471 1.05436 1.22485 0.82833 1.05531 0.94570 1.23564 0.98981 0.95401 0.85562 1.20294 0.93611 1.23912 0.93832 1.17418 0.85264 0.75051 0.84166 1.90674 1.17953 1.52674 1.84787 1.45774 1.09981 1.73986 1.05457 1.20704 0.97721 0.94908 0.80080 0.90823 1.22395 0.98630 0.97063 1.00230 1.20385 0.85382 0.94627 0.93249 1.44266 1.37156 1.05634 1.45904 1.19495 1.24495 0.92436 1.02315 0.91406 1.25691 1.00955 0.99279 0.98469 1.70174 1.54044 1.09376 1.24135 0.85374 0.77561 0.78315 0.79834 1.21853 1.22446 1.19167 1.21077 0.94645 0.83642 0.98066 1.21801 0.96049 0.95695 0.99166 0.90599 1.21686 1.02118 0.93546 1.01691 0.92353 0.93850 0.88143 0.90718 0.90787 0.88227 0.86128 0.88254 0.76517 0.76017 0.93585 0.92236 0.97839 0.93702 0.94395 0.92265 0.95548 0.92249 0.92493 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -12.14 10.69 -148.98 -1.59 -13.73 16 3 C 0.15 4.28 5.97 71.24 0.43 4.70 16 4 C 0.11 3.42 6.89 43.51 0.30 3.72 16 5 N -0.30 -8.69 12.50 -46.68 -0.58 -9.28 16 6 N -0.35 -7.58 3.98 -367.78 -1.46 -9.05 16 7 C 0.08 0.88 11.44 127.77 1.46 2.34 16 8 C 0.12 2.65 10.99 84.28 0.93 3.58 16 9 C -0.30 -9.16 6.13 -20.15 -0.12 -9.29 16 10 C 0.59 20.35 7.78 86.66 0.67 21.02 16 11 O -0.58 -23.32 14.58 -4.06 -0.06 -23.38 16 12 N -0.70 -21.85 3.58 -445.66 -1.60 -23.45 16 13 C 0.17 5.73 2.21 45.02 0.10 5.83 16 14 H 0.07 2.54 7.57 -2.39 -0.02 2.52 16 15 C -0.14 -5.73 5.77 30.67 0.18 -5.56 16 16 C 0.19 8.97 5.05 86.36 0.44 9.41 16 17 N -0.61 -28.41 3.00 -699.10 -2.09 -30.51 16 18 C -0.26 -13.50 9.59 84.03 0.81 -12.69 16 19 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 20 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 21 N -0.93 -53.75 11.19 21.65 0.24 -53.50 16 22 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.15 5.44 5.50 86.36 0.48 5.92 16 27 C -0.11 -3.23 2.67 -10.72 -0.03 -3.26 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 C -0.13 -3.07 9.06 71.98 0.65 -2.42 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.38 6.56 -2.39 -0.02 2.37 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.22 3.23 7.46 -2.91 -0.02 3.21 16 39 H 0.40 11.20 5.65 -92.71 -0.52 10.67 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.00 0.18 7.74 -2.39 -0.02 0.16 16 43 H 0.04 2.48 6.04 -2.39 -0.01 2.47 16 44 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.06 2.10 7.93 -2.38 -0.02 2.08 16 46 H 0.03 0.89 6.64 -2.39 -0.02 0.88 16 47 H 0.06 1.28 7.53 -2.39 -0.02 1.27 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.57 392.41 3.26 -71.31 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.43 Total: 22.49 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 7.95 Total: 22.96 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -5.50 Total: -125.78 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.65 Total: -37.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.57 3.26 -71.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942194467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.750 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds