Wall clock time and date at job start Tue Mar 31 2020 19:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99648 * 2 1 4 4 C 1.53001 * 109.46718 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.35040 * 124.88162 * 124.99887 * 5 4 3 7 7 C 1.35363 * 107.22517 * 180.30050 * 6 5 4 8 8 C 1.41508 * 105.50333 * 359.60539 * 7 6 5 9 9 C 1.47710 * 126.51484 * 180.12746 * 8 7 6 10 10 O 1.21572 * 120.00563 * 0.30089 * 9 8 7 11 11 N 1.34780 * 119.99849 * 180.29568 * 9 8 7 12 12 C 1.46494 * 120.00228 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46306 * 325.02841 * 12 11 9 14 14 C 1.53035 * 109.46199 * 84.99920 * 12 11 9 15 15 C 1.53195 * 109.31081 * 58.65942 * 14 12 11 16 16 N 1.46923 * 108.77840 * 54.63115 * 15 14 12 17 17 C 1.36942 * 120.62737 * 126.41440 * 16 15 14 18 18 H 1.08004 * 119.99681 * 207.67893 * 17 16 15 19 19 C 1.38813 * 120.00230 * 27.68059 * 17 16 15 20 20 N 1.31618 * 119.99734 * 17.35308 * 19 17 16 21 21 Si 1.86797 * 119.99989 * 197.35640 * 19 17 16 22 22 H 1.48501 * 109.47103 * 89.99752 * 21 19 17 23 23 H 1.48496 * 109.47161 * 209.99877 * 21 19 17 24 24 H 1.48501 * 109.47172 * 329.99838 * 21 19 17 25 25 C 1.46924 * 118.74150 * 306.39836 * 16 15 14 26 26 C 1.53042 * 109.46281 * 205.07223 * 12 11 9 27 27 H 1.09003 * 109.49809 * 181.39512 * 26 12 11 28 28 C 1.53000 * 109.49858 * 61.29454 * 26 12 11 29 29 N 1.28461 * 124.88543 * 305.04720 * 5 4 3 30 30 H 1.08995 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47389 * 299.99465 * 1 2 3 32 32 H 1.09003 * 109.47453 * 59.99819 * 1 2 3 33 33 H 1.08991 * 109.47170 * 60.00424 * 3 2 1 34 34 H 1.08995 * 109.47372 * 300.00129 * 3 2 1 35 35 H 1.09000 * 109.47380 * 60.00205 * 4 3 2 36 36 H 1.08995 * 109.47152 * 300.00077 * 4 3 2 37 37 H 1.08000 * 126.38645 * 0.03649 * 6 5 4 38 38 H 1.08004 * 127.24738 * 179.70190 * 7 6 5 39 39 H 0.97007 * 119.99806 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.50023 * 178.60573 * 14 12 11 41 41 H 1.08995 * 109.50184 * 298.67499 * 14 12 11 42 42 H 1.09000 * 109.58824 * 174.42273 * 15 14 12 43 43 H 1.09004 * 109.58547 * 294.84567 * 15 14 12 44 44 H 0.97000 * 119.99722 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.58804 * 173.39499 * 25 16 15 46 46 H 1.09001 * 109.58106 * 293.67560 * 25 16 15 47 47 H 1.09000 * 109.47311 * 59.99961 * 28 26 12 48 48 H 1.09006 * 109.47211 * 180.02562 * 28 26 12 49 49 H 1.09000 * 109.46912 * 300.00067 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0262 2.9704 0.9057 7 6 5.3305 4.2467 0.5728 8 6 4.5714 4.5259 -0.5884 9 6 4.5556 5.7951 -1.3439 10 8 5.2474 6.7269 -0.9818 11 7 3.7741 5.9202 -2.4348 12 6 3.7587 7.1787 -3.1845 13 1 3.8729 8.0143 -2.4939 14 6 4.9121 7.1873 -4.1902 15 6 4.7670 5.9922 -5.1377 16 7 3.4321 6.0336 -5.7501 17 6 3.2875 5.9935 -7.1112 18 1 2.4279 6.4529 -7.5767 19 6 4.2455 5.3624 -7.8928 20 7 5.0950 4.5217 -7.3414 21 14 4.3290 5.7063 -9.7269 22 1 5.2404 6.8523 -9.9747 23 1 4.8415 4.5047 -10.4330 24 1 2.9716 6.0354 -10.2312 25 6 2.2554 6.1184 -4.8744 26 6 2.4287 7.3120 -3.9299 27 1 2.4265 8.2363 -4.5076 28 6 1.2783 7.3364 -2.9214 29 7 3.8769 3.4402 -0.8641 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6440 -0.8909 36 1 3.8573 0.6436 0.8891 37 1 5.4218 2.4150 1.7432 38 1 6.0107 4.9113 1.0847 39 1 3.2218 5.1768 -2.7236 40 1 4.8865 8.1128 -4.7655 41 1 5.8602 7.1164 -3.6571 42 1 5.5280 6.0485 -5.9160 43 1 4.8831 5.0649 -4.5767 44 1 5.7647 4.0810 -7.8875 45 1 1.3593 6.2578 -5.4790 46 1 2.1653 5.2003 -4.2937 47 1 1.4036 8.1841 -2.2478 48 1 0.3312 7.4309 -3.4528 49 1 1.2805 6.4111 -2.3453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942443323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:41 Heat of formation + Delta-G solvation = 21.420090 kcal Electronic energy + Delta-G solvation = -30084.403363 eV Core-core repulsion = 26049.285657 eV Total energy + Delta-G solvation = -4035.117706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.70014 -39.58626 -38.35377 -37.44750 -34.18446 -34.12408 -32.45552 -31.12828 -30.76643 -30.11258 -29.38000 -26.77037 -25.85219 -25.32941 -24.29609 -22.59654 -21.76818 -21.45835 -21.01454 -19.90032 -18.45544 -18.00067 -17.14989 -16.66382 -16.55012 -16.29182 -15.86624 -15.15470 -15.09911 -14.77354 -14.40648 -14.20150 -14.00526 -13.74224 -13.63270 -13.46092 -13.22806 -13.08606 -12.84038 -12.47979 -12.35062 -12.05621 -11.97530 -11.72991 -11.43473 -11.31882 -11.03818 -10.87680 -10.76252 -10.67895 -10.29989 -10.15497 -10.13275 -9.99676 -9.74970 -9.67316 -9.37393 -9.30561 -9.11291 -8.48902 -8.40632 -6.63916 -5.75410 -3.18315 1.65277 2.10951 2.16481 3.39520 3.40047 3.46813 3.47643 3.62235 3.73118 4.19310 4.46328 4.51512 4.68325 4.69377 4.81559 4.95013 5.00212 5.15754 5.24796 5.26803 5.31090 5.36061 5.41292 5.42343 5.54896 5.63424 5.67642 5.74585 5.96014 6.04158 6.14482 6.22456 6.34068 6.36968 6.43426 6.51069 6.57294 6.68137 6.71564 6.72082 6.83822 6.96928 7.08001 7.43662 7.73195 7.76171 7.82741 8.06648 8.47524 8.60209 9.23939 9.87507 10.43950 11.32400 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.003335 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.055130 B = 8394.336781 C = 9420.507609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.284 5.284 6 C -0.019 4.019 7 C -0.179 4.179 8 C -0.007 4.007 9 C 0.601 3.399 10 O -0.543 6.543 11 N -0.696 5.696 12 C 0.160 3.840 13 H 0.074 0.926 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.152 3.848 26 C -0.118 4.118 27 H 0.082 0.918 28 C -0.142 4.142 29 N -0.257 5.257 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.182 0.818 38 H 0.162 0.838 39 H 0.407 0.593 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.253 0.747 45 H 0.056 0.944 46 H 0.014 0.986 47 H 0.048 0.952 48 H 0.053 0.947 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 -6.025 18.858 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.073 5.073 6 C -0.161 4.161 7 C -0.207 4.207 8 C -0.168 4.168 9 C 0.385 3.615 10 O -0.419 6.419 11 N -0.347 5.347 12 C 0.056 3.944 13 H 0.092 0.908 14 C -0.195 4.195 15 C 0.049 3.951 16 N -0.313 5.313 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.025 3.975 26 C -0.139 4.139 27 H 0.101 0.899 28 C -0.200 4.200 29 N -0.093 5.093 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.199 0.801 38 H 0.180 0.820 39 H 0.243 0.757 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.032 0.968 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.421 -6.197 18.230 20.297 hybrid contribution 0.309 0.142 -0.488 0.595 sum -6.113 -6.055 17.742 19.718 Atomic orbital electron populations 1.22791 0.79816 1.03134 1.00524 1.87770 1.20688 1.26717 1.95633 1.22648 0.92172 0.85585 1.02382 1.21662 0.93052 0.78654 1.06199 1.45300 1.31327 1.11519 1.19195 1.22845 0.98275 0.96553 0.98431 1.21781 1.04637 0.95899 0.98395 1.22116 1.01380 0.94120 0.99141 1.16858 0.79950 0.84719 0.79991 1.90754 1.42606 1.39326 1.69248 1.45983 1.44455 1.17332 1.26911 1.20932 0.95920 0.85187 0.92373 0.90775 1.22573 0.96769 1.02292 0.97843 1.20723 0.88369 0.91895 0.94142 1.44068 0.99729 1.85567 1.01985 1.19186 1.08534 1.29070 0.81514 0.91674 1.25028 1.00120 0.96508 0.97889 1.70049 1.21420 1.28065 1.34914 0.86304 0.77814 0.77286 0.85432 1.21467 1.21853 1.20476 1.20903 0.91624 0.93121 0.91874 1.21944 0.92999 1.02135 0.96838 0.89948 1.21766 0.98189 1.01233 0.98769 1.73557 1.22861 0.97693 1.15142 0.89163 0.93880 0.93405 0.92568 0.91010 0.87749 0.87064 0.80135 0.82011 0.75653 0.91743 0.92611 0.89630 0.96326 0.93697 0.92588 0.96806 0.93266 0.92804 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.56 10.70 -35.23 -0.38 -3.94 16 3 C 0.05 0.44 6.04 37.16 0.22 0.66 16 4 C 0.13 1.03 6.77 -4.04 -0.03 1.01 16 5 N -0.28 -3.21 3.41 -61.33 -0.21 -3.42 16 6 C -0.02 -0.19 11.40 -17.17 -0.20 -0.39 16 7 C -0.18 -2.32 10.81 -39.36 -0.43 -2.75 16 8 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 9 C 0.60 10.92 7.79 -12.39 -0.10 10.82 16 10 O -0.54 -11.06 16.59 5.30 0.09 -10.97 16 11 N -0.70 -12.34 3.59 -54.75 -0.20 -12.53 16 12 C 0.16 2.90 2.21 -67.89 -0.15 2.75 16 13 H 0.07 1.34 7.57 -51.93 -0.39 0.94 16 14 C -0.15 -3.19 5.77 -26.61 -0.15 -3.34 16 15 C 0.17 4.26 5.05 -3.71 -0.02 4.24 16 16 N -0.59 -14.65 3.00 -172.32 -0.52 -15.17 16 17 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 18 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 19 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 21 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.15 3.08 5.50 -3.71 -0.02 3.06 16 26 C -0.12 -2.02 2.67 -90.50 -0.24 -2.26 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 C -0.14 -1.98 9.05 37.16 0.34 -1.64 16 29 N -0.26 -3.79 11.36 33.42 0.38 -3.41 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 0.58 8.04 -51.93 -0.42 0.16 16 37 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 39 H 0.41 7.25 6.46 -40.82 -0.26 6.98 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 43 H 0.02 0.49 7.74 -51.93 -0.40 0.08 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.01 0.29 6.65 -51.93 -0.35 -0.06 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -33.31 396.23 -7.73 -41.03 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.98 Total: 5.66 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.48 Total: 5.74 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.08 Total: -60.28 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.29 Total: -14.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.31 -7.73 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942443323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.452 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds