Wall clock time and date at job start Tue Mar 31 2020 19:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99648 * 2 1 4 4 C 1.53001 * 109.46718 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.35040 * 124.88162 * 124.99887 * 5 4 3 7 7 C 1.35363 * 107.22517 * 180.30050 * 6 5 4 8 8 C 1.41508 * 105.50333 * 359.60539 * 7 6 5 9 9 C 1.47710 * 126.51484 * 180.12746 * 8 7 6 10 10 O 1.21572 * 120.00563 * 0.30089 * 9 8 7 11 11 N 1.34780 * 119.99849 * 180.29568 * 9 8 7 12 12 C 1.46494 * 120.00228 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46306 * 325.02841 * 12 11 9 14 14 C 1.53035 * 109.46199 * 84.99920 * 12 11 9 15 15 C 1.53195 * 109.31081 * 58.65942 * 14 12 11 16 16 N 1.46923 * 108.77840 * 54.63115 * 15 14 12 17 17 C 1.36942 * 120.62737 * 126.41440 * 16 15 14 18 18 H 1.08004 * 119.99681 * 207.67893 * 17 16 15 19 19 C 1.38813 * 120.00230 * 27.68059 * 17 16 15 20 20 N 1.31618 * 119.99734 * 17.35308 * 19 17 16 21 21 Si 1.86797 * 119.99989 * 197.35640 * 19 17 16 22 22 H 1.48501 * 109.47103 * 89.99752 * 21 19 17 23 23 H 1.48496 * 109.47161 * 209.99877 * 21 19 17 24 24 H 1.48501 * 109.47172 * 329.99838 * 21 19 17 25 25 C 1.46924 * 118.74150 * 306.39836 * 16 15 14 26 26 C 1.53042 * 109.46281 * 205.07223 * 12 11 9 27 27 H 1.09003 * 109.49809 * 181.39512 * 26 12 11 28 28 C 1.53000 * 109.49858 * 61.29454 * 26 12 11 29 29 N 1.28461 * 124.88543 * 305.04720 * 5 4 3 30 30 H 1.08995 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47389 * 299.99465 * 1 2 3 32 32 H 1.09003 * 109.47453 * 59.99819 * 1 2 3 33 33 H 1.08991 * 109.47170 * 60.00424 * 3 2 1 34 34 H 1.08995 * 109.47372 * 300.00129 * 3 2 1 35 35 H 1.09000 * 109.47380 * 60.00205 * 4 3 2 36 36 H 1.08995 * 109.47152 * 300.00077 * 4 3 2 37 37 H 1.08000 * 126.38645 * 0.03649 * 6 5 4 38 38 H 1.08004 * 127.24738 * 179.70190 * 7 6 5 39 39 H 0.97007 * 119.99806 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.50023 * 178.60573 * 14 12 11 41 41 H 1.08995 * 109.50184 * 298.67499 * 14 12 11 42 42 H 1.09000 * 109.58824 * 174.42273 * 15 14 12 43 43 H 1.09004 * 109.58547 * 294.84567 * 15 14 12 44 44 H 0.97000 * 119.99722 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.58804 * 173.39499 * 25 16 15 46 46 H 1.09001 * 109.58106 * 293.67560 * 25 16 15 47 47 H 1.09000 * 109.47311 * 59.99961 * 28 26 12 48 48 H 1.09006 * 109.47211 * 180.02562 * 28 26 12 49 49 H 1.09000 * 109.46912 * 300.00067 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0262 2.9704 0.9057 7 6 5.3305 4.2467 0.5728 8 6 4.5714 4.5259 -0.5884 9 6 4.5556 5.7951 -1.3439 10 8 5.2474 6.7269 -0.9818 11 7 3.7741 5.9202 -2.4348 12 6 3.7587 7.1787 -3.1845 13 1 3.8729 8.0143 -2.4939 14 6 4.9121 7.1873 -4.1902 15 6 4.7670 5.9922 -5.1377 16 7 3.4321 6.0336 -5.7501 17 6 3.2875 5.9935 -7.1112 18 1 2.4279 6.4529 -7.5767 19 6 4.2455 5.3624 -7.8928 20 7 5.0950 4.5217 -7.3414 21 14 4.3290 5.7063 -9.7269 22 1 5.2404 6.8523 -9.9747 23 1 4.8415 4.5047 -10.4330 24 1 2.9716 6.0354 -10.2312 25 6 2.2554 6.1184 -4.8744 26 6 2.4287 7.3120 -3.9299 27 1 2.4265 8.2363 -4.5076 28 6 1.2783 7.3364 -2.9214 29 7 3.8769 3.4402 -0.8641 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6440 -0.8909 36 1 3.8573 0.6436 0.8891 37 1 5.4218 2.4150 1.7432 38 1 6.0107 4.9113 1.0847 39 1 3.2218 5.1768 -2.7236 40 1 4.8865 8.1128 -4.7655 41 1 5.8602 7.1164 -3.6571 42 1 5.5280 6.0485 -5.9160 43 1 4.8831 5.0649 -4.5767 44 1 5.7647 4.0810 -7.8875 45 1 1.3593 6.2578 -5.4790 46 1 2.1653 5.2003 -4.2937 47 1 1.4036 8.1841 -2.2478 48 1 0.3312 7.4309 -3.4528 49 1 1.2805 6.4111 -2.3453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942443323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:40 Heat of formation + Delta-G solvation = -0.808726 kcal Electronic energy + Delta-G solvation = -30085.367277 eV Core-core repulsion = 26049.285657 eV Total energy + Delta-G solvation = -4036.081619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.65991 -41.07630 -39.12098 -38.92330 -35.99754 -34.98703 -33.96377 -32.89907 -32.04921 -31.48104 -30.37168 -27.54329 -27.40847 -26.97389 -25.40176 -23.89487 -23.19889 -22.71512 -22.37676 -21.09607 -20.05972 -19.04716 -18.58995 -18.02913 -17.42989 -17.03069 -16.93209 -16.75362 -16.43553 -16.15638 -15.76960 -15.58598 -15.31670 -15.24599 -14.77433 -14.69744 -14.53292 -14.39955 -14.13937 -13.93532 -13.53748 -13.16507 -13.02308 -12.97138 -12.71468 -12.63098 -12.55008 -12.39075 -12.33775 -12.17639 -11.95356 -11.87063 -11.69259 -11.49051 -11.21406 -11.08787 -10.78127 -10.53932 -10.32566 -10.10370 -9.91152 -8.68105 -7.86672 -5.32444 0.53152 1.20054 1.34472 1.46238 1.48467 1.56621 2.22229 2.42860 2.51178 2.79230 3.27973 3.40674 3.65263 3.73519 3.81645 3.82290 3.99399 4.06713 4.11478 4.15634 4.21978 4.40488 4.44657 4.48925 4.58939 4.61466 4.65872 4.66632 4.74501 4.76518 4.77910 4.81143 4.83490 4.96932 5.01709 5.08976 5.16373 5.28195 5.34483 5.41752 5.49470 5.57584 5.64626 5.72858 5.84082 6.01381 6.38004 6.48665 6.89924 7.13870 7.20409 7.85291 8.37571 9.19232 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.003335 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.055130 B = 8394.336781 C = 9420.507609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.121 3.879 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.200 4.200 8 C -0.041 4.041 9 C 0.598 3.402 10 O -0.572 6.572 11 N -0.694 5.694 12 C 0.165 3.835 13 H 0.082 0.918 14 C -0.143 4.143 15 C 0.190 3.810 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.288 1.288 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.150 3.850 26 C -0.105 4.105 27 H 0.084 0.916 28 C -0.132 4.132 29 N -0.282 5.282 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.234 0.766 38 H 0.168 0.832 39 H 0.406 0.594 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.048 0.952 43 H -0.007 1.007 44 H 0.248 0.752 45 H 0.061 0.939 46 H 0.013 0.987 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -6.505 20.628 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.001 3.999 5 N -0.068 5.068 6 C -0.133 4.133 7 C -0.228 4.228 8 C -0.200 4.200 9 C 0.384 3.616 10 O -0.451 6.451 11 N -0.344 5.344 12 C 0.061 3.939 13 H 0.100 0.900 14 C -0.183 4.183 15 C 0.064 3.936 16 N -0.329 5.329 17 C -0.391 4.391 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.190 1.190 25 C 0.025 3.975 26 C -0.126 4.126 27 H 0.102 0.898 28 C -0.190 4.190 29 N -0.119 5.119 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.250 0.750 38 H 0.186 0.814 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.031 0.969 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.729 -6.668 20.007 22.461 hybrid contribution 0.657 0.178 -0.977 1.191 sum -7.072 -6.490 19.030 21.314 Atomic orbital electron populations 1.22969 0.78745 1.04304 1.00889 1.87745 1.21935 1.26727 1.95672 1.22550 0.92605 0.85484 1.01693 1.21966 0.92645 0.77251 1.08011 1.45641 1.30975 1.11714 1.18446 1.23548 0.96012 0.95451 0.98246 1.22026 1.05205 0.97621 0.97962 1.21951 1.03639 0.93776 1.00609 1.17237 0.79126 0.85425 0.79832 1.90716 1.43674 1.40622 1.70062 1.45945 1.44503 1.17051 1.26896 1.20857 0.95382 0.85826 0.91884 0.89954 1.22403 0.97822 1.00475 0.97644 1.20367 0.87698 0.92320 0.93202 1.44278 1.00941 1.85723 1.02004 1.19553 1.08454 1.28212 0.82915 0.91132 1.25791 1.00168 0.96644 1.02001 1.70213 1.22230 1.29442 1.36217 0.85280 0.78175 0.76568 0.80508 1.21474 1.22396 1.18997 1.21059 0.90083 0.94525 0.91863 1.21800 0.93655 1.00388 0.96742 0.89765 1.21687 0.97314 1.01897 0.98122 1.73493 1.23554 0.98190 1.16624 0.87666 0.92664 0.93914 0.91683 0.93334 0.88242 0.82959 0.74985 0.81418 0.75774 0.91407 0.93365 0.93348 0.98916 0.94328 0.92096 0.96875 0.91787 0.91102 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -6.72 10.70 -148.98 -1.59 -8.32 16 3 C 0.05 0.88 6.04 71.98 0.43 1.32 16 4 C 0.12 1.71 6.77 86.38 0.58 2.29 16 5 N -0.28 -5.75 3.41 -347.94 -1.19 -6.94 16 6 C 0.01 0.16 11.40 83.54 0.95 1.12 16 7 C -0.20 -4.95 10.81 22.41 0.24 -4.71 16 8 C -0.04 -1.30 7.13 42.46 0.30 -0.99 16 9 C 0.60 22.22 7.79 86.75 0.68 22.89 16 10 O -0.57 -23.79 16.59 -3.94 -0.07 -23.86 16 11 N -0.69 -25.05 3.59 -445.41 -1.60 -26.65 16 12 C 0.16 5.97 2.21 45.02 0.10 6.07 16 13 H 0.08 2.91 7.57 -2.38 -0.02 2.89 16 14 C -0.14 -6.07 5.77 30.67 0.18 -5.89 16 15 C 0.19 9.69 5.05 86.36 0.44 10.12 16 16 N -0.61 -30.63 3.00 -699.08 -2.09 -32.72 16 17 C -0.26 -14.42 9.59 84.03 0.81 -13.62 16 18 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 19 C -0.05 -2.87 4.91 84.86 0.42 -2.46 16 20 N -0.93 -56.71 11.19 21.65 0.24 -56.47 16 21 Si 0.97 45.55 29.59 68.60 2.03 47.58 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 C 0.15 6.07 5.50 86.36 0.47 6.54 16 26 C -0.11 -3.49 2.67 -10.71 -0.03 -3.52 16 27 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 28 C -0.13 -3.41 9.05 71.98 0.65 -2.76 16 29 N -0.28 -8.26 11.36 -48.17 -0.55 -8.80 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.15 0.93 8.04 -2.39 -0.02 0.91 16 37 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.41 14.82 6.46 -92.70 -0.60 14.22 16 40 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 43 H -0.01 -0.40 7.74 -2.38 -0.02 -0.42 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.06 2.38 7.93 -2.39 -0.02 2.37 16 46 H 0.01 0.55 6.65 -2.39 -0.02 0.53 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 49 H 0.05 1.32 7.54 -2.39 -0.02 1.30 16 Total: -1.00 -75.15 396.23 3.00 -72.15 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.34 Total: 26.05 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 7.47 Total: 17.98 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -5.18 Total: -131.58 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.66 Total: -32.17 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.15 3.00 -72.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942443323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.342 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds