Wall clock time and date at job start Tue Mar 31 2020 19:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42910 * 113.99934 * 2 1 4 4 C 1.52999 * 109.47375 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47111 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88000 * 125.02183 * 5 4 3 7 7 C 1.35369 * 107.22071 * 179.76531 * 6 5 4 8 8 C 1.41496 * 105.50563 * 0.35316 * 7 6 5 9 9 C 1.47714 * 126.51702 * 179.89908 * 8 7 6 10 10 O 1.21564 * 120.00164 * 359.72213 * 9 8 7 11 11 N 1.34777 * 119.99813 * 179.71540 * 9 8 7 12 12 C 1.46500 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.44540 * 324.97414 * 12 11 9 14 14 C 1.53043 * 109.48490 * 84.91645 * 12 11 9 15 15 C 1.53195 * 109.34151 * 181.35883 * 14 12 11 16 16 N 1.46931 * 108.77090 * 305.37743 * 15 14 12 17 17 C 1.36931 * 120.63052 * 233.62821 * 16 15 14 18 18 H 1.07997 * 119.99836 * 27.67259 * 17 16 15 19 19 C 1.38814 * 120.00018 * 207.66856 * 17 16 15 20 20 N 1.31616 * 120.00061 * 17.36294 * 19 17 16 21 21 Si 1.86793 * 120.00044 * 197.36386 * 19 17 16 22 22 H 1.48499 * 109.47482 * 59.99956 * 21 19 17 23 23 H 1.48497 * 109.47288 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47539 * 300.00126 * 21 19 17 25 25 C 1.46932 * 118.73674 * 53.60944 * 16 15 14 26 26 C 1.53031 * 109.46272 * 205.00062 * 12 11 9 27 27 H 1.09001 * 109.50079 * 298.59796 * 26 12 11 28 28 C 1.53002 * 109.49662 * 58.66631 * 26 12 11 29 29 N 1.28466 * 124.88191 * 305.02484 * 5 4 3 30 30 H 1.08997 * 109.47325 * 299.99798 * 1 2 3 31 31 H 1.09002 * 109.47185 * 60.00664 * 1 2 3 32 32 H 1.09001 * 109.46618 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47251 * 59.99691 * 3 2 1 34 34 H 1.09001 * 109.46727 * 300.00117 * 3 2 1 35 35 H 1.08999 * 109.47333 * 59.99558 * 4 3 2 36 36 H 1.09002 * 109.46398 * 299.99732 * 4 3 2 37 37 H 1.07997 * 126.39034 * 0.03389 * 6 5 4 38 38 H 1.08000 * 127.24512 * 180.24856 * 7 6 5 39 39 H 0.96999 * 120.00271 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47247 * 61.39932 * 14 12 11 41 41 H 1.09004 * 109.52189 * 301.33920 * 14 12 11 42 42 H 1.08995 * 109.58404 * 185.59775 * 15 14 12 43 43 H 1.09000 * 109.58653 * 65.16514 * 15 14 12 44 44 H 0.97000 * 120.00280 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58387 * 186.60013 * 25 16 15 46 46 H 1.09007 * 109.69781 * 66.24826 * 25 16 15 47 47 H 1.09000 * 109.46857 * 179.97438 * 28 26 12 48 48 H 1.08995 * 109.47171 * 59.93537 * 28 26 12 49 49 H 1.08997 * 109.46945 * 299.93271 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0265 2.9704 0.9054 7 6 5.3396 4.2428 0.5656 8 6 4.5722 4.5257 -0.5891 9 6 4.5575 5.7943 -1.3456 10 8 5.2503 6.7255 -0.9843 11 7 3.7760 5.9192 -2.4366 12 6 3.7618 7.1772 -3.1873 13 1 3.8760 8.0130 -2.4971 14 6 4.9164 7.1852 -4.1919 15 6 4.9189 8.5157 -4.9513 16 7 3.5940 8.7192 -5.5531 17 6 3.4680 8.9753 -6.8923 18 1 4.2114 8.6085 -7.5845 19 6 2.3846 9.7062 -7.3602 20 7 1.6739 10.4361 -6.5268 21 14 1.9352 9.6538 -9.1725 22 1 1.6213 8.2564 -9.5646 23 1 0.7485 10.5134 -9.4133 24 1 3.0783 10.1497 -9.9805 25 6 2.4070 8.6422 -4.6906 26 6 2.4327 7.3103 -3.9341 27 1 2.3291 6.4879 -4.6419 28 6 1.2775 7.2701 -2.9316 29 7 3.8771 3.4402 -0.8644 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8568 0.6440 -0.8908 36 1 3.8573 0.6438 0.8892 37 1 5.4224 2.4149 1.7427 38 1 6.0286 4.9035 1.0706 39 1 3.2230 5.1762 -2.7248 40 1 4.7900 6.3639 -4.8973 41 1 5.8614 7.0671 -3.6617 42 1 5.6758 8.4875 -5.7351 43 1 5.1355 9.3304 -4.2603 44 1 0.9171 10.9472 -6.8538 45 1 1.5066 8.6977 -5.3024 46 1 2.4163 9.4673 -3.9783 47 1 0.3311 7.3654 -3.4639 48 1 1.3816 8.0927 -2.2241 49 1 1.2969 6.3228 -2.3929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942443325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:50 Heat of formation + Delta-G solvation = 18.693137 kcal Electronic energy + Delta-G solvation = -29346.113292 eV Core-core repulsion = 25310.877337 eV Total energy + Delta-G solvation = -4035.235955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.87315 -39.52548 -38.49616 -37.47256 -34.44763 -34.29100 -32.30175 -31.79123 -30.92194 -29.99149 -29.15303 -26.90659 -25.90423 -25.38023 -24.22967 -22.74349 -21.76011 -21.48341 -20.80348 -19.87426 -19.18071 -18.05361 -17.24130 -16.79936 -16.57998 -16.39630 -15.99962 -15.68833 -15.21056 -14.78161 -14.45570 -14.23645 -13.98887 -13.76168 -13.59717 -13.56935 -13.24731 -13.03710 -12.81881 -12.54420 -12.43295 -12.15861 -12.00060 -11.87485 -11.42247 -11.25528 -11.08672 -11.02571 -10.71529 -10.60597 -10.31710 -10.28300 -10.14840 -9.96555 -9.95348 -9.66042 -9.48524 -9.42232 -9.27587 -8.60817 -8.40717 -6.65113 -5.76290 -3.17749 1.46756 1.94316 2.00459 3.24246 3.40205 3.46020 3.47144 3.47937 3.55834 4.02363 4.30350 4.51540 4.52234 4.54356 4.64991 4.82645 4.86146 5.02327 5.08002 5.18618 5.22281 5.30129 5.37135 5.48897 5.50915 5.59748 5.64591 5.75236 5.94575 6.15345 6.16786 6.22820 6.31497 6.41411 6.42348 6.52476 6.53386 6.57890 6.65883 6.74570 6.84786 7.01476 7.05007 7.37932 7.57443 7.67785 7.82013 7.90783 8.45553 8.47983 9.24023 9.87472 10.44627 11.32515 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.002526 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.281732 B =11080.201565 C =12364.285402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.285 5.285 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.006 4.006 9 C 0.598 3.402 10 O -0.535 6.535 11 N -0.707 5.707 12 C 0.157 3.843 13 H 0.083 0.917 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.181 3.819 26 C -0.122 4.122 27 H 0.067 0.933 28 C -0.139 4.139 29 N -0.263 5.263 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.182 0.818 38 H 0.164 0.836 39 H 0.401 0.599 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.254 0.746 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -21.201 16.996 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.074 5.074 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.167 4.167 9 C 0.382 3.618 10 O -0.410 6.410 11 N -0.356 5.356 12 C 0.054 3.946 13 H 0.101 0.899 14 C -0.181 4.181 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.055 3.945 26 C -0.143 4.143 27 H 0.086 0.914 28 C -0.197 4.197 29 N -0.099 5.099 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.143 -21.113 16.428 26.752 hybrid contribution -0.182 0.026 -0.386 0.427 sum -0.325 -21.088 16.043 26.498 Atomic orbital electron populations 1.22803 0.79679 1.03204 1.00607 1.87767 1.20794 1.26676 1.95649 1.22656 0.92120 0.85624 1.02454 1.21660 0.93092 0.78602 1.06156 1.45298 1.31418 1.11503 1.19222 1.22870 0.97953 0.96715 0.98406 1.21821 1.04417 0.95959 0.98430 1.22178 1.01044 0.94102 0.99406 1.16901 0.80156 0.84713 0.80031 1.90793 1.42317 1.39143 1.68721 1.46173 1.44424 1.17488 1.27538 1.21105 0.96184 0.84861 0.92488 0.89863 1.22402 0.97168 1.00783 0.97724 1.20883 0.89101 0.92708 0.95239 1.44099 0.99517 1.82431 1.05494 1.19152 1.09003 1.27429 0.82523 0.91688 1.25032 1.00523 0.96553 0.97565 1.70018 1.21075 1.29737 1.33909 0.86374 0.77754 0.77432 0.85235 1.21093 1.21674 1.20898 1.20805 0.92359 0.89318 0.92058 1.22161 0.92074 1.03203 0.96820 0.91432 1.21726 0.98525 1.00576 0.98875 1.73501 1.22922 0.97768 1.15661 0.93752 0.93431 0.89096 0.92441 0.91120 0.87896 0.86993 0.80040 0.81890 0.76464 0.92304 0.92563 0.92546 0.96097 0.93588 0.88996 0.96091 0.92657 0.92990 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.89 10.70 -35.23 -0.38 -3.27 16 3 C 0.05 0.34 6.04 37.16 0.22 0.56 16 4 C 0.13 0.76 6.77 -4.04 -0.03 0.73 16 5 N -0.28 -2.60 3.41 -61.33 -0.21 -2.81 16 6 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.02 10.81 -39.36 -0.43 -2.45 16 8 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 9 C 0.60 9.91 7.79 -12.39 -0.10 9.81 16 10 O -0.53 -10.48 16.59 5.31 0.09 -10.39 16 11 N -0.71 -11.19 4.36 -54.75 -0.24 -11.42 16 12 C 0.16 2.86 1.88 -67.89 -0.13 2.74 16 13 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 14 C -0.14 -2.68 5.65 -26.61 -0.15 -2.83 16 15 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 16 N -0.59 -15.02 2.99 -172.31 -0.52 -15.54 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 18 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 21 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.18 4.29 4.60 -3.71 -0.02 4.28 16 26 C -0.12 -2.29 2.46 -90.50 -0.22 -2.52 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 C -0.14 -2.26 9.03 37.16 0.34 -1.92 16 29 N -0.26 -3.20 11.36 33.42 0.38 -2.82 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.38 8.04 -51.93 -0.42 -0.04 16 37 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.40 5.72 8.03 -40.82 -0.33 5.39 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.09 2.42 6.03 -51.93 -0.31 2.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.04 0.62 7.36 -51.93 -0.38 0.23 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -33.26 400.15 -7.82 -41.08 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.13 Total: 3.22 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.43 Total: 4.79 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.04 Total: -58.15 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.29 Total: -13.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.26 -7.82 -41.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942443325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.770 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds