Wall clock time and date at job start Tue Mar 31 2020 19:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42910 * 113.99934 * 2 1 4 4 C 1.52999 * 109.47375 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47111 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88000 * 125.02183 * 5 4 3 7 7 C 1.35369 * 107.22071 * 179.76531 * 6 5 4 8 8 C 1.41496 * 105.50563 * 0.35316 * 7 6 5 9 9 C 1.47714 * 126.51702 * 179.89908 * 8 7 6 10 10 O 1.21564 * 120.00164 * 359.72213 * 9 8 7 11 11 N 1.34777 * 119.99813 * 179.71540 * 9 8 7 12 12 C 1.46500 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.44540 * 324.97414 * 12 11 9 14 14 C 1.53043 * 109.48490 * 84.91645 * 12 11 9 15 15 C 1.53195 * 109.34151 * 181.35883 * 14 12 11 16 16 N 1.46931 * 108.77090 * 305.37743 * 15 14 12 17 17 C 1.36931 * 120.63052 * 233.62821 * 16 15 14 18 18 H 1.07997 * 119.99836 * 27.67259 * 17 16 15 19 19 C 1.38814 * 120.00018 * 207.66856 * 17 16 15 20 20 N 1.31616 * 120.00061 * 17.36294 * 19 17 16 21 21 Si 1.86793 * 120.00044 * 197.36386 * 19 17 16 22 22 H 1.48499 * 109.47482 * 59.99956 * 21 19 17 23 23 H 1.48497 * 109.47288 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47539 * 300.00126 * 21 19 17 25 25 C 1.46932 * 118.73674 * 53.60944 * 16 15 14 26 26 C 1.53031 * 109.46272 * 205.00062 * 12 11 9 27 27 H 1.09001 * 109.50079 * 298.59796 * 26 12 11 28 28 C 1.53002 * 109.49662 * 58.66631 * 26 12 11 29 29 N 1.28466 * 124.88191 * 305.02484 * 5 4 3 30 30 H 1.08997 * 109.47325 * 299.99798 * 1 2 3 31 31 H 1.09002 * 109.47185 * 60.00664 * 1 2 3 32 32 H 1.09001 * 109.46618 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47251 * 59.99691 * 3 2 1 34 34 H 1.09001 * 109.46727 * 300.00117 * 3 2 1 35 35 H 1.08999 * 109.47333 * 59.99558 * 4 3 2 36 36 H 1.09002 * 109.46398 * 299.99732 * 4 3 2 37 37 H 1.07997 * 126.39034 * 0.03389 * 6 5 4 38 38 H 1.08000 * 127.24512 * 180.24856 * 7 6 5 39 39 H 0.96999 * 120.00271 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.47247 * 61.39932 * 14 12 11 41 41 H 1.09004 * 109.52189 * 301.33920 * 14 12 11 42 42 H 1.08995 * 109.58404 * 185.59775 * 15 14 12 43 43 H 1.09000 * 109.58653 * 65.16514 * 15 14 12 44 44 H 0.97000 * 120.00280 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58387 * 186.60013 * 25 16 15 46 46 H 1.09007 * 109.69781 * 66.24826 * 25 16 15 47 47 H 1.09000 * 109.46857 * 179.97438 * 28 26 12 48 48 H 1.08995 * 109.47171 * 59.93537 * 28 26 12 49 49 H 1.08997 * 109.46945 * 299.93271 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0265 2.9704 0.9054 7 6 5.3396 4.2428 0.5656 8 6 4.5722 4.5257 -0.5891 9 6 4.5575 5.7943 -1.3456 10 8 5.2503 6.7255 -0.9843 11 7 3.7760 5.9192 -2.4366 12 6 3.7618 7.1772 -3.1873 13 1 3.8760 8.0130 -2.4971 14 6 4.9164 7.1852 -4.1919 15 6 4.9189 8.5157 -4.9513 16 7 3.5940 8.7192 -5.5531 17 6 3.4680 8.9753 -6.8923 18 1 4.2114 8.6085 -7.5845 19 6 2.3846 9.7062 -7.3602 20 7 1.6739 10.4361 -6.5268 21 14 1.9352 9.6538 -9.1725 22 1 1.6213 8.2564 -9.5646 23 1 0.7485 10.5134 -9.4133 24 1 3.0783 10.1497 -9.9805 25 6 2.4070 8.6422 -4.6906 26 6 2.4327 7.3103 -3.9341 27 1 2.3291 6.4879 -4.6419 28 6 1.2775 7.2701 -2.9316 29 7 3.8771 3.4402 -0.8644 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8568 0.6440 -0.8908 36 1 3.8573 0.6438 0.8892 37 1 5.4224 2.4149 1.7427 38 1 6.0286 4.9035 1.0706 39 1 3.2230 5.1762 -2.7248 40 1 4.7900 6.3639 -4.8973 41 1 5.8614 7.0671 -3.6617 42 1 5.6758 8.4875 -5.7351 43 1 5.1355 9.3304 -4.2603 44 1 0.9171 10.9472 -6.8538 45 1 1.5066 8.6977 -5.3024 46 1 2.4163 9.4673 -3.9783 47 1 0.3311 7.3654 -3.4639 48 1 1.3816 8.0927 -2.2241 49 1 1.2969 6.3228 -2.3929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942443325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:49 Heat of formation + Delta-G solvation = -3.767640 kcal Electronic energy + Delta-G solvation = -29347.087265 eV Core-core repulsion = 25310.877337 eV Total energy + Delta-G solvation = -4036.209928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.66792 -40.93978 -39.14923 -38.94046 -36.16017 -34.99086 -33.95629 -33.51886 -31.83312 -31.23519 -30.32916 -27.58824 -27.53078 -26.87524 -25.34761 -23.96972 -22.89898 -22.50848 -22.36501 -21.23333 -20.58693 -19.06676 -18.59776 -17.91211 -17.41835 -17.24495 -17.01664 -16.76320 -16.56005 -16.03872 -15.66064 -15.56251 -15.36486 -15.17169 -14.73948 -14.64690 -14.57359 -14.38135 -14.14858 -13.93951 -13.55654 -13.19862 -13.00628 -12.92391 -12.88139 -12.62278 -12.55425 -12.45497 -12.33323 -12.06499 -11.90329 -11.85058 -11.77067 -11.60468 -11.33629 -11.08858 -10.77516 -10.55111 -10.32771 -10.11102 -9.92989 -8.71427 -7.87467 -5.32821 0.50854 1.18623 1.33639 1.48367 1.50378 1.57523 2.15774 2.38550 2.51986 2.78920 3.27339 3.38641 3.62540 3.72889 3.80431 3.83640 3.99225 4.01626 4.16294 4.18673 4.23174 4.33398 4.45405 4.48794 4.55913 4.62941 4.65594 4.67388 4.71558 4.75917 4.78801 4.83707 4.84622 4.92076 4.98703 5.07593 5.12499 5.28081 5.31153 5.33715 5.49390 5.52234 5.65245 5.72504 5.82519 6.01533 6.38563 6.47839 6.89204 7.14143 7.19355 7.83555 8.37004 9.19483 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.002526 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.281732 B =11080.201565 C =12364.285402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.277 5.277 6 C 0.010 3.990 7 C -0.202 4.202 8 C -0.038 4.038 9 C 0.598 3.402 10 O -0.573 6.573 11 N -0.697 5.697 12 C 0.169 3.831 13 H 0.061 0.939 14 C -0.126 4.126 15 C 0.145 3.855 16 N -0.610 5.610 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.189 3.811 26 C -0.107 4.107 27 H 0.071 0.929 28 C -0.131 4.131 29 N -0.275 5.275 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.232 0.768 38 H 0.164 0.836 39 H 0.411 0.589 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.064 0.936 46 H -0.005 1.005 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -24.503 18.077 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.003 3.997 5 N -0.066 5.066 6 C -0.132 4.132 7 C -0.230 4.230 8 C -0.197 4.197 9 C 0.384 3.616 10 O -0.451 6.451 11 N -0.347 5.347 12 C 0.064 3.936 13 H 0.080 0.920 14 C -0.166 4.166 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.797 3.203 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.203 1.203 25 C 0.063 3.937 26 C -0.128 4.128 27 H 0.089 0.911 28 C -0.189 4.189 29 N -0.112 5.112 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.167 0.833 37 H 0.248 0.752 38 H 0.182 0.818 39 H 0.247 0.753 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.013 0.987 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.056 -24.458 17.512 30.081 hybrid contribution -0.193 0.978 -0.648 1.189 sum -0.249 -23.480 16.865 28.910 Atomic orbital electron populations 1.22961 0.78809 1.04268 1.00869 1.87744 1.21822 1.26784 1.95678 1.22589 0.92795 0.85457 1.01755 1.21974 0.92372 0.77108 1.08269 1.45645 1.30856 1.11768 1.18367 1.23508 0.95881 0.95524 0.98273 1.22025 1.05062 0.97691 0.98233 1.21825 1.03471 0.93634 1.00736 1.17282 0.79141 0.85428 0.79717 1.90763 1.43807 1.40820 1.69678 1.45920 1.44727 1.16697 1.27366 1.20732 0.95418 0.85520 0.91899 0.92048 1.22208 0.97838 0.98981 0.97601 1.20963 0.87882 0.93937 0.95298 1.44361 1.00956 1.82663 1.05315 1.19480 1.09172 1.27182 0.83702 0.91515 1.25804 1.00566 0.96386 1.01674 1.70180 1.21441 1.30644 1.35719 0.85323 0.77218 0.77501 0.80279 1.20247 1.21965 1.20254 1.20600 0.90870 0.91086 0.91149 1.21895 0.93613 1.00196 0.97076 0.91106 1.21660 0.97404 1.01695 0.98161 1.73436 1.23030 0.97916 1.16778 0.93036 0.93656 0.87718 0.92255 0.92799 0.87384 0.83347 0.75206 0.81813 0.75263 0.91778 0.92005 0.92212 0.97202 0.93986 0.91766 0.98739 0.92259 0.93580 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.01 10.70 -148.98 -1.59 -6.60 16 3 C 0.05 0.59 6.04 71.98 0.44 1.03 16 4 C 0.12 1.03 6.77 86.38 0.58 1.62 16 5 N -0.28 -4.16 3.41 -347.95 -1.19 -5.35 16 6 C 0.01 0.13 11.40 83.54 0.95 1.08 16 7 C -0.20 -4.23 10.81 22.41 0.24 -3.98 16 8 C -0.04 -1.00 7.13 42.46 0.30 -0.70 16 9 C 0.60 19.82 7.79 86.75 0.68 20.50 16 10 O -0.57 -22.93 16.59 -3.92 -0.06 -23.00 16 11 N -0.70 -21.82 4.36 -445.42 -1.94 -23.76 16 12 C 0.17 6.23 1.88 45.02 0.08 6.31 16 13 H 0.06 2.57 7.58 -2.39 -0.02 2.56 16 14 C -0.13 -4.84 5.65 30.67 0.17 -4.67 16 15 C 0.15 6.55 6.52 86.36 0.56 7.12 16 16 N -0.61 -31.73 2.99 -699.06 -2.09 -33.82 16 17 C -0.27 -14.87 9.58 84.03 0.81 -14.06 16 18 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 19 C -0.05 -2.75 4.91 84.86 0.42 -2.34 16 20 N -0.93 -55.71 11.19 21.65 0.24 -55.46 16 21 Si 0.97 45.12 29.59 68.60 2.03 47.15 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C 0.19 9.30 4.60 86.36 0.40 9.70 16 26 C -0.11 -4.07 2.46 -10.72 -0.03 -4.10 16 27 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 28 C -0.13 -4.21 9.03 71.98 0.65 -3.56 16 29 N -0.27 -6.18 11.36 -48.18 -0.55 -6.73 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.15 0.23 8.04 -2.39 -0.02 0.21 16 37 H 0.23 0.49 8.06 -2.91 -0.02 0.47 16 38 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.41 11.29 8.03 -92.71 -0.74 10.54 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.60 7.93 -2.39 -0.02 2.58 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.06 3.51 6.03 -2.39 -0.01 3.50 16 46 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.85 7.36 -2.39 -0.02 1.83 16 Total: -1.00 -74.54 400.15 2.54 -72.00 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.19 Total: 20.13 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 7.50 Total: 15.44 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.53 Total: -125.12 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.66 Total: -29.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.54 2.54 -72.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942443325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.235 kcal (2) G-P(sol) polarization free energy of solvation -74.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds