Wall clock time and date at job start Tue Mar 31 2020 19:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99937 * 2 1 4 4 C 1.52999 * 109.47113 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.34263 * 125.75239 * 125.30856 * 5 4 3 7 7 C 1.38041 * 107.41418 * 180.10782 * 6 5 4 8 8 C 1.47439 * 126.41316 * 179.87338 * 7 6 5 9 9 O 1.21598 * 119.99735 * 359.71300 * 8 7 6 10 10 N 1.34777 * 119.99895 * 179.71583 * 8 7 6 11 11 C 1.46498 * 119.99410 * 179.97438 * 10 8 7 12 12 H 1.08991 * 109.46481 * 35.00081 * 11 10 8 13 13 C 1.53046 * 109.45990 * 275.02178 * 11 10 8 14 14 C 1.53193 * 109.31116 * 301.37860 * 13 11 10 15 15 N 1.46927 * 108.76409 * 305.34004 * 14 13 11 16 16 C 1.36943 * 120.62959 * 233.63949 * 15 14 13 17 17 H 1.08002 * 119.99480 * 152.60687 * 16 15 14 18 18 C 1.38816 * 119.99869 * 332.61063 * 16 15 14 19 19 N 1.31621 * 119.99467 * 159.36881 * 18 16 15 20 20 Si 1.86791 * 120.00297 * 339.37035 * 18 16 15 21 21 H 1.48502 * 109.47243 * 92.92907 * 20 18 16 22 22 H 1.48499 * 109.47533 * 212.93132 * 20 18 16 23 23 H 1.48506 * 109.47394 * 332.92988 * 20 18 16 24 24 C 1.46921 * 118.73848 * 53.62107 * 15 14 13 25 25 C 1.53044 * 109.45613 * 154.97233 * 11 10 8 26 26 H 1.09001 * 109.49593 * 178.62174 * 25 11 10 27 27 C 1.52997 * 109.49854 * 298.68491 * 25 11 10 28 28 C 1.41289 * 107.17436 * 359.61106 * 7 6 5 29 29 N 1.30448 * 108.02040 * 0.23604 * 28 7 6 30 30 H 1.09003 * 109.47497 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47419 * 299.99919 * 1 2 3 32 32 H 1.09007 * 109.46968 * 60.00190 * 1 2 3 33 33 H 1.09003 * 109.47331 * 60.00090 * 3 2 1 34 34 H 1.08998 * 109.47466 * 300.00175 * 3 2 1 35 35 H 1.09003 * 109.46760 * 59.99972 * 4 3 2 36 36 H 1.08998 * 109.47287 * 300.00517 * 4 3 2 37 37 H 1.08000 * 126.29283 * 359.96540 * 6 5 4 38 38 H 0.96995 * 119.99931 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.49291 * 61.31451 * 13 11 10 40 40 H 1.09000 * 109.49860 * 181.41162 * 13 11 10 41 41 H 1.09002 * 109.58340 * 185.56249 * 14 13 11 42 42 H 1.08993 * 109.60071 * 65.13671 * 14 13 11 43 43 H 0.96997 * 119.99421 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58608 * 186.60372 * 24 15 14 45 45 H 1.08998 * 109.58684 * 66.18000 * 24 15 14 46 46 H 1.09004 * 109.46791 * 60.00535 * 27 25 11 47 47 H 1.09004 * 109.47075 * 179.97438 * 27 25 11 48 48 H 1.08998 * 109.47571 * 300.00522 * 27 25 11 49 49 H 1.07994 * 125.99193 * 180.24162 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0253 2.9832 0.8910 7 6 5.3272 4.2833 0.5384 8 6 6.2633 5.1842 1.2355 9 8 6.8523 4.7997 2.2274 10 7 6.4661 6.4339 0.7734 11 6 7.3958 7.3292 1.4664 12 1 8.2295 6.7503 1.8634 13 6 6.6678 8.0294 2.6162 14 6 5.4759 8.8137 2.0583 15 7 5.9573 9.7210 1.0077 16 6 5.6756 11.0602 1.0594 17 1 6.3433 11.7707 0.5948 18 6 4.5320 11.5043 1.7089 19 7 4.4505 12.7526 2.1182 20 14 3.1089 10.3304 2.0020 21 1 3.2510 9.7049 3.3414 22 1 1.8282 11.0794 1.9390 23 1 3.1160 9.2735 0.9589 24 6 6.7470 9.1644 -0.0992 25 6 7.9244 8.3758 0.4828 26 1 8.5973 9.0572 1.0034 27 6 8.6804 7.6771 -0.6490 28 6 4.5759 4.5869 -0.6190 29 7 3.8696 3.5349 -0.9291 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 5.4316 2.4375 1.7297 38 1 5.9964 6.7405 -0.0180 39 1 6.3119 7.2850 3.3284 40 1 7.3522 8.7144 3.1166 41 1 5.0133 9.3928 2.8575 42 1 4.7472 8.1211 1.6374 43 1 3.6513 13.0630 2.5718 44 1 7.1230 9.9748 -0.7235 45 1 6.1219 8.5003 -0.6962 46 1 8.0067 6.9967 -1.1701 47 1 9.0563 8.4229 -1.3495 48 1 9.5163 7.1138 -0.2341 49 1 4.5848 5.5254 -1.1533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944493304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:14 Heat of formation + Delta-G solvation = 21.747705 kcal Electronic energy + Delta-G solvation = -29726.112979 eV Core-core repulsion = 25691.009480 eV Total energy + Delta-G solvation = -4035.103499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.60466 -39.71201 -38.46455 -37.63114 -34.42672 -34.23739 -32.53379 -31.55577 -30.76651 -30.41916 -29.25781 -26.81949 -26.32167 -25.25976 -23.94216 -23.14072 -21.83225 -21.50742 -20.95746 -20.15480 -18.76936 -18.22152 -17.06183 -16.79988 -16.67210 -15.95083 -15.82014 -15.48263 -15.18111 -15.04770 -14.68355 -14.46967 -14.19828 -13.97473 -13.64941 -13.58743 -13.40211 -13.30017 -12.97601 -12.52482 -12.49175 -12.23496 -12.17092 -11.86678 -11.73072 -11.57881 -11.49716 -11.26617 -11.16646 -10.62408 -10.51118 -10.26140 -10.20629 -9.94421 -9.86018 -9.70157 -9.63775 -9.47898 -8.97014 -8.70331 -8.50994 -6.97017 -5.95130 -3.30930 1.34787 1.87897 2.04880 3.25237 3.33773 3.48300 3.48665 3.50427 3.58874 4.12546 4.36817 4.53173 4.53696 4.57277 4.70716 4.83791 4.85310 4.92946 4.99857 5.03673 5.12368 5.14188 5.18395 5.27022 5.31291 5.37665 5.46201 5.57065 5.75384 5.88850 5.92091 6.00290 6.07434 6.18117 6.20835 6.31343 6.40579 6.44276 6.47998 6.56906 6.61310 6.67734 6.72249 6.82568 6.98342 7.28641 7.81439 7.95946 8.32536 8.49710 8.93678 9.72100 10.09370 11.20811 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003013 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.268860 B = 9290.731600 C =10725.384634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.136 3.864 5 N -0.364 5.364 6 C 0.129 3.871 7 C -0.286 4.286 8 C 0.593 3.407 9 O -0.556 6.556 10 N -0.711 5.711 11 C 0.162 3.838 12 H 0.080 0.920 13 C -0.146 4.146 14 C 0.129 3.871 15 N -0.605 5.605 16 C -0.259 4.259 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.884 3.116 21 H -0.290 1.290 22 H -0.305 1.305 23 H -0.271 1.271 24 C 0.155 3.845 25 C -0.120 4.120 26 H 0.086 0.914 27 C -0.141 4.141 28 C 0.086 3.914 29 N -0.297 5.297 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.189 0.811 38 H 0.399 0.601 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.018 0.982 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 -24.098 -5.737 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.028 4.028 4 C 0.014 3.986 5 N -0.145 5.145 6 C -0.021 4.021 7 C -0.301 4.301 8 C 0.380 3.620 9 O -0.436 6.436 10 N -0.362 5.362 11 C 0.058 3.942 12 H 0.098 0.902 13 C -0.186 4.186 14 C 0.003 3.997 15 N -0.329 5.329 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.196 1.196 24 C 0.029 3.971 25 C -0.141 4.141 26 H 0.105 0.895 27 C -0.199 4.199 28 C -0.102 4.102 29 N -0.117 5.117 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.234 0.766 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.607 -25.010 -5.795 25.723 hybrid contribution -0.870 0.210 0.489 1.020 sum -2.477 -24.800 -5.306 25.482 Atomic orbital electron populations 1.22790 0.79839 1.03123 1.00511 1.87766 1.20671 1.26872 1.95635 1.22658 0.92433 0.85393 1.02280 1.21468 0.92778 0.78681 1.05640 1.48310 1.32951 1.12059 1.21143 1.22969 0.90724 0.94360 0.94092 1.20377 1.10271 0.96261 1.03162 1.17167 0.80494 0.81118 0.83172 1.90742 1.50371 1.76126 1.26343 1.45914 1.45966 1.12691 1.31579 1.20881 0.91253 0.89591 0.92486 0.90237 1.22392 0.99940 0.99121 0.97196 1.21282 0.94084 0.92351 0.91970 1.44364 1.62001 1.05154 1.21342 1.18905 1.04577 0.80754 1.34498 0.89689 1.25264 0.97697 0.95427 0.99111 1.69840 1.28773 1.16111 1.40367 0.86947 0.82976 0.80765 0.77878 1.21749 1.23311 1.19646 1.20934 0.90532 0.95718 0.89965 1.21948 0.98870 0.96841 0.96392 0.89544 1.21757 0.99736 1.00119 0.98331 1.24146 0.93324 0.97713 0.94984 1.77166 1.24276 0.96893 1.13336 0.89137 0.93722 0.93643 0.92481 0.91381 0.88356 0.87325 0.79410 0.76570 0.92211 0.90800 0.91138 0.95765 0.92800 0.91517 0.96456 0.92992 0.92583 0.93112 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.14 10.70 -35.23 -0.38 -3.51 16 3 C 0.05 0.39 6.11 37.16 0.23 0.61 16 4 C 0.14 0.96 6.86 -4.04 -0.03 0.93 16 5 N -0.36 -3.66 3.65 -60.81 -0.22 -3.88 16 6 C 0.13 1.38 11.25 -16.56 -0.19 1.20 16 7 C -0.29 -3.67 6.13 -105.06 -0.64 -4.31 16 8 C 0.59 9.03 7.78 -12.51 -0.10 8.93 16 9 O -0.56 -10.02 16.56 5.28 0.09 -9.93 16 10 N -0.71 -10.40 3.59 -54.84 -0.20 -10.59 16 11 C 0.16 2.57 2.21 -67.89 -0.15 2.42 16 12 H 0.08 1.28 7.57 -51.93 -0.39 0.88 16 13 C -0.15 -2.70 5.77 -26.61 -0.15 -2.85 16 14 C 0.13 2.78 3.94 -3.71 -0.01 2.77 16 15 N -0.61 -13.71 2.77 -172.32 -0.48 -14.19 16 16 C -0.26 -7.05 10.04 -15.05 -0.15 -7.20 16 17 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 18 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 19 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 20 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 21 H -0.29 -7.24 6.62 56.52 0.37 -6.87 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 23 H -0.27 -6.68 6.64 56.52 0.38 -6.30 16 24 C 0.15 2.78 5.50 -3.71 -0.02 2.76 16 25 C -0.12 -1.81 2.67 -90.50 -0.24 -2.05 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 C -0.14 -1.72 9.05 37.16 0.34 -1.38 16 28 C 0.09 1.02 11.50 -16.98 -0.20 0.83 16 29 N -0.30 -3.58 12.33 30.86 0.38 -3.20 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.24 8.14 -51.92 -0.42 -0.19 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.53 8.06 -51.93 -0.42 0.11 16 37 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.40 5.37 5.68 -40.82 -0.23 5.14 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.71 4.49 -51.93 -0.23 1.48 16 42 H 0.02 0.53 6.67 -51.93 -0.35 0.18 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 45 H 0.02 0.29 6.64 -51.93 -0.34 -0.05 16 46 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.19 1.85 7.50 -52.49 -0.39 1.45 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -34.10 389.42 -6.45 -40.55 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.85 Total: 2.96 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.30 Total: 4.54 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.26 Total: -58.76 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.29 Total: -13.44 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.10 -6.45 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944493304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.295 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds