Wall clock time and date at job start Tue Mar 31 2020 19:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99937 * 2 1 4 4 C 1.52999 * 109.47113 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.34263 * 125.75239 * 125.30856 * 5 4 3 7 7 C 1.38041 * 107.41418 * 180.10782 * 6 5 4 8 8 C 1.47439 * 126.41316 * 179.87338 * 7 6 5 9 9 O 1.21598 * 119.99735 * 359.71300 * 8 7 6 10 10 N 1.34777 * 119.99895 * 179.71583 * 8 7 6 11 11 C 1.46498 * 119.99410 * 179.97438 * 10 8 7 12 12 H 1.08991 * 109.46481 * 35.00081 * 11 10 8 13 13 C 1.53046 * 109.45990 * 275.02178 * 11 10 8 14 14 C 1.53193 * 109.31116 * 301.37860 * 13 11 10 15 15 N 1.46927 * 108.76409 * 305.34004 * 14 13 11 16 16 C 1.36943 * 120.62959 * 233.63949 * 15 14 13 17 17 H 1.08002 * 119.99480 * 152.60687 * 16 15 14 18 18 C 1.38816 * 119.99869 * 332.61063 * 16 15 14 19 19 N 1.31621 * 119.99467 * 159.36881 * 18 16 15 20 20 Si 1.86791 * 120.00297 * 339.37035 * 18 16 15 21 21 H 1.48502 * 109.47243 * 92.92907 * 20 18 16 22 22 H 1.48499 * 109.47533 * 212.93132 * 20 18 16 23 23 H 1.48506 * 109.47394 * 332.92988 * 20 18 16 24 24 C 1.46921 * 118.73848 * 53.62107 * 15 14 13 25 25 C 1.53044 * 109.45613 * 154.97233 * 11 10 8 26 26 H 1.09001 * 109.49593 * 178.62174 * 25 11 10 27 27 C 1.52997 * 109.49854 * 298.68491 * 25 11 10 28 28 C 1.41289 * 107.17436 * 359.61106 * 7 6 5 29 29 N 1.30448 * 108.02040 * 0.23604 * 28 7 6 30 30 H 1.09003 * 109.47497 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47419 * 299.99919 * 1 2 3 32 32 H 1.09007 * 109.46968 * 60.00190 * 1 2 3 33 33 H 1.09003 * 109.47331 * 60.00090 * 3 2 1 34 34 H 1.08998 * 109.47466 * 300.00175 * 3 2 1 35 35 H 1.09003 * 109.46760 * 59.99972 * 4 3 2 36 36 H 1.08998 * 109.47287 * 300.00517 * 4 3 2 37 37 H 1.08000 * 126.29283 * 359.96540 * 6 5 4 38 38 H 0.96995 * 119.99931 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.49291 * 61.31451 * 13 11 10 40 40 H 1.09000 * 109.49860 * 181.41162 * 13 11 10 41 41 H 1.09002 * 109.58340 * 185.56249 * 14 13 11 42 42 H 1.08993 * 109.60071 * 65.13671 * 14 13 11 43 43 H 0.96997 * 119.99421 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58608 * 186.60372 * 24 15 14 45 45 H 1.08998 * 109.58684 * 66.18000 * 24 15 14 46 46 H 1.09004 * 109.46791 * 60.00535 * 27 25 11 47 47 H 1.09004 * 109.47075 * 179.97438 * 27 25 11 48 48 H 1.08998 * 109.47571 * 300.00522 * 27 25 11 49 49 H 1.07994 * 125.99193 * 180.24162 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0253 2.9832 0.8910 7 6 5.3272 4.2833 0.5384 8 6 6.2633 5.1842 1.2355 9 8 6.8523 4.7997 2.2274 10 7 6.4661 6.4339 0.7734 11 6 7.3958 7.3292 1.4664 12 1 8.2295 6.7503 1.8634 13 6 6.6678 8.0294 2.6162 14 6 5.4759 8.8137 2.0583 15 7 5.9573 9.7210 1.0077 16 6 5.6756 11.0602 1.0594 17 1 6.3433 11.7707 0.5948 18 6 4.5320 11.5043 1.7089 19 7 4.4505 12.7526 2.1182 20 14 3.1089 10.3304 2.0020 21 1 3.2510 9.7049 3.3414 22 1 1.8282 11.0794 1.9390 23 1 3.1160 9.2735 0.9589 24 6 6.7470 9.1644 -0.0992 25 6 7.9244 8.3758 0.4828 26 1 8.5973 9.0572 1.0034 27 6 8.6804 7.6771 -0.6490 28 6 4.5759 4.5869 -0.6190 29 7 3.8696 3.5349 -0.9291 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 5.4316 2.4375 1.7297 38 1 5.9964 6.7405 -0.0180 39 1 6.3119 7.2850 3.3284 40 1 7.3522 8.7144 3.1166 41 1 5.0133 9.3928 2.8575 42 1 4.7472 8.1211 1.6374 43 1 3.6513 13.0630 2.5718 44 1 7.1230 9.9748 -0.7235 45 1 6.1219 8.5003 -0.6962 46 1 8.0067 6.9967 -1.1701 47 1 9.0563 8.4229 -1.3495 48 1 9.5163 7.1138 -0.2341 49 1 4.5848 5.5254 -1.1533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944493304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:14 Heat of formation + Delta-G solvation = -2.169443 kcal Electronic energy + Delta-G solvation = -29727.150104 eV Core-core repulsion = 25691.009480 eV Total energy + Delta-G solvation = -4036.140625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.46066 -40.98201 -39.13078 -38.91000 -36.03011 -35.02066 -33.90464 -33.34623 -32.11123 -31.40481 -30.12134 -27.75038 -27.38805 -26.85888 -24.71136 -24.20614 -23.37707 -23.03666 -21.74695 -21.19477 -20.16496 -19.14661 -18.68163 -17.70437 -17.40662 -17.26236 -16.69453 -16.57698 -16.43408 -16.21039 -15.87971 -15.64593 -15.26103 -15.18381 -15.03808 -14.82288 -14.69608 -14.28395 -14.18179 -13.85493 -13.76079 -13.42980 -13.15344 -13.05372 -12.86608 -12.76793 -12.74114 -12.38458 -12.23721 -12.06810 -12.02940 -11.87550 -11.62720 -11.39826 -11.22616 -10.86927 -10.80625 -10.69196 -10.66233 -10.05644 -9.66767 -8.88834 -8.15068 -5.45503 0.49510 1.11356 1.18483 1.30699 1.39713 1.48324 2.36134 2.42434 2.50910 2.69936 3.06176 3.36866 3.48086 3.75543 3.77705 3.83524 3.86287 3.99440 4.10952 4.14067 4.17256 4.27554 4.28251 4.42683 4.46092 4.46139 4.58976 4.60550 4.60957 4.65262 4.71887 4.80128 4.80804 4.93615 4.98594 5.00035 5.08808 5.20830 5.27397 5.34762 5.35192 5.52301 5.67437 5.75403 5.89160 5.98817 6.15412 6.44147 6.69071 6.93647 7.35375 7.64830 8.05432 9.04781 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003013 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.268860 B = 9290.731600 C =10725.384634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.131 3.869 5 N -0.358 5.358 6 C 0.141 3.859 7 C -0.312 4.312 8 C 0.596 3.404 9 O -0.588 6.588 10 N -0.706 5.706 11 C 0.170 3.830 12 H 0.084 0.916 13 C -0.139 4.139 14 C 0.130 3.870 15 N -0.616 5.616 16 C -0.240 4.240 17 H 0.057 0.943 18 C -0.035 4.035 19 N -0.957 5.957 20 Si 0.942 3.058 21 H -0.287 1.287 22 H -0.314 1.314 23 H -0.255 1.255 24 C 0.150 3.850 25 C -0.108 4.108 26 H 0.076 0.924 27 C -0.133 4.133 28 C 0.086 3.914 29 N -0.318 5.318 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.212 0.788 38 H 0.405 0.595 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -27.315 -6.716 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.011 3.989 5 N -0.137 5.137 6 C -0.011 4.011 7 C -0.326 4.326 8 C 0.385 3.615 9 O -0.470 6.470 10 N -0.357 5.357 11 C 0.065 3.935 12 H 0.102 0.898 13 C -0.179 4.179 14 C 0.005 3.995 15 N -0.340 5.340 16 C -0.370 4.370 17 H 0.075 0.925 18 C -0.229 4.229 19 N -0.604 5.604 20 Si 0.772 3.228 21 H -0.215 1.215 22 H -0.243 1.243 23 H -0.179 1.179 24 C 0.025 3.975 25 C -0.129 4.129 26 H 0.094 0.906 27 C -0.191 4.191 28 C -0.101 4.101 29 N -0.138 5.138 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.228 0.772 38 H 0.242 0.758 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.504 -28.289 -6.826 29.140 hybrid contribution -0.859 1.139 0.771 1.622 sum -2.363 -27.150 -6.055 27.917 Atomic orbital electron populations 1.22968 0.78787 1.04319 1.00830 1.87745 1.21887 1.26838 1.95662 1.22555 0.92924 0.85310 1.01471 1.21741 0.92231 0.77447 1.07451 1.48514 1.32385 1.12514 1.20298 1.23334 0.89834 0.93834 0.94089 1.20265 1.11226 0.96960 1.04187 1.17436 0.80214 0.81173 0.82681 1.90724 1.51758 1.76705 1.27807 1.45816 1.45782 1.12492 1.31612 1.20719 0.91221 0.89703 0.91828 0.89810 1.22287 0.98727 0.98722 0.98191 1.21223 0.95363 0.91975 0.90957 1.44463 1.62540 1.03796 1.23251 1.18877 1.03300 0.82609 1.32194 0.92539 1.25845 1.00162 0.96730 1.00185 1.69965 1.29366 1.18230 1.42806 0.85985 0.79490 0.79071 0.78246 1.21457 1.24321 1.17903 1.21171 0.91189 0.96245 0.88903 1.21797 0.97676 0.96273 0.97124 0.90606 1.21688 0.99828 1.00351 0.97231 1.24398 0.92768 0.98289 0.94684 1.77143 1.24823 0.97468 1.14330 0.87585 0.93354 0.93395 0.92920 0.92588 0.87441 0.84679 0.77174 0.75771 0.92205 0.91527 0.94087 0.95000 0.93144 0.91978 0.93960 0.91861 0.91563 0.92120 0.77796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.70 10.70 -148.98 -1.59 -7.30 16 3 C 0.06 0.76 6.11 71.98 0.44 1.20 16 4 C 0.13 1.51 6.86 86.38 0.59 2.10 16 5 N -0.36 -6.26 3.65 -346.30 -1.26 -7.52 16 6 C 0.14 2.63 11.25 84.27 0.95 3.58 16 7 C -0.31 -7.23 6.13 -20.15 -0.12 -7.36 16 8 C 0.60 16.78 7.78 86.67 0.67 17.46 16 9 O -0.59 -20.06 16.56 -4.02 -0.07 -20.13 16 10 N -0.71 -18.86 3.59 -445.67 -1.60 -20.46 16 11 C 0.17 5.03 2.21 45.02 0.10 5.13 16 12 H 0.08 2.50 7.57 -2.39 -0.02 2.48 16 13 C -0.14 -4.98 5.77 30.67 0.18 -4.80 16 14 C 0.13 5.48 3.94 86.36 0.34 5.82 16 15 N -0.62 -27.47 2.77 -699.11 -1.94 -29.40 16 16 C -0.24 -13.24 10.04 84.03 0.84 -12.40 16 17 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 18 C -0.03 -2.01 5.23 84.86 0.44 -1.57 16 19 N -0.96 -60.19 13.97 21.65 0.30 -59.89 16 20 Si 0.94 46.89 24.35 68.60 1.67 48.56 16 21 H -0.29 -14.01 6.62 99.48 0.66 -13.35 16 22 H -0.31 -15.97 7.11 99.48 0.71 -15.27 16 23 H -0.25 -11.83 6.64 99.48 0.66 -11.16 16 24 C 0.15 5.09 5.50 86.36 0.48 5.56 16 25 C -0.11 -3.04 2.67 -10.72 -0.03 -3.06 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 C -0.13 -2.79 9.05 71.98 0.65 -2.14 16 28 C 0.09 1.84 11.50 85.65 0.99 2.82 16 29 N -0.32 -6.96 12.33 -56.28 -0.69 -7.65 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.14 0.85 8.06 -2.39 -0.02 0.83 16 37 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.41 9.68 5.68 -92.71 -0.53 9.15 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.04 1.98 4.49 -2.39 -0.01 1.97 16 42 H 0.03 1.31 6.67 -2.39 -0.02 1.29 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 45 H 0.04 1.27 6.64 -2.39 -0.02 1.25 16 46 H 0.06 1.20 7.54 -2.39 -0.02 1.19 16 47 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.21 3.43 7.50 -2.91 -0.02 3.41 16 Total: -1.00 -74.43 389.42 2.92 -71.52 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.33 Total: 18.42 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 7.77 Total: 13.85 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.19 Total: -124.93 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.66 Total: -27.43 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Total: -74.43 2.92 -71.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944493304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.349 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds