Wall clock time and date at job start Tue Mar 31 2020 19:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99914 * 2 1 4 4 C 1.53002 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46488 * 109.47200 * 179.97438 * 4 3 2 6 6 C 1.34265 * 125.75483 * 125.26715 * 5 4 3 7 7 C 1.38041 * 107.41874 * 180.14664 * 6 5 4 8 8 C 1.47433 * 126.41393 * 179.87529 * 7 6 5 9 9 O 1.21604 * 119.99858 * 359.70763 * 8 7 6 10 10 N 1.34781 * 119.99648 * 179.71210 * 8 7 6 11 11 C 1.46501 * 119.99643 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46081 * 325.02650 * 11 10 8 13 13 C 1.53043 * 109.45946 * 84.99830 * 11 10 8 14 14 C 1.53193 * 109.31436 * 181.38250 * 13 11 10 15 15 N 1.46927 * 108.77604 * 305.37159 * 14 13 11 16 16 C 1.36937 * 120.62528 * 233.58247 * 15 14 13 17 17 H 1.08004 * 119.99416 * 153.24186 * 16 15 14 18 18 C 1.38810 * 120.00322 * 333.24184 * 16 15 14 19 19 N 1.31612 * 120.00167 * 158.77940 * 18 16 15 20 20 Si 1.86802 * 119.99800 * 339.05196 * 18 16 15 21 21 H 1.48498 * 109.46929 * 95.07501 * 20 18 16 22 22 H 1.48499 * 109.47205 * 215.07093 * 20 18 16 23 23 H 1.48499 * 109.47520 * 335.07449 * 20 18 16 24 24 C 1.46922 * 118.74160 * 53.85503 * 15 14 13 25 25 C 1.53036 * 109.46233 * 205.06672 * 11 10 8 26 26 H 1.09004 * 109.49930 * 298.60350 * 25 11 10 27 27 C 1.53007 * 109.49386 * 58.66170 * 25 11 10 28 28 C 1.41286 * 107.17056 * 359.60829 * 7 6 5 29 29 N 1.30444 * 108.02367 * 0.24128 * 28 7 6 30 30 H 1.09002 * 109.47138 * 300.00262 * 1 2 3 31 31 H 1.09002 * 109.46782 * 60.00103 * 1 2 3 32 32 H 1.08996 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47048 * 59.99842 * 3 2 1 34 34 H 1.09001 * 109.46809 * 300.00126 * 3 2 1 35 35 H 1.09008 * 109.46686 * 59.99592 * 4 3 2 36 36 H 1.09002 * 109.46809 * 300.00511 * 4 3 2 37 37 H 1.08002 * 126.28847 * 359.97438 * 6 5 4 38 38 H 0.96994 * 120.00218 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.49529 * 61.43464 * 13 11 10 40 40 H 1.09003 * 109.52425 * 301.35546 * 13 11 10 41 41 H 1.08994 * 109.58501 * 185.57538 * 14 13 11 42 42 H 1.09008 * 109.58369 * 65.15368 * 14 13 11 43 43 H 0.97006 * 120.00610 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58820 * 65.92561 * 24 15 14 45 45 H 1.09000 * 109.59030 * 186.35500 * 24 15 14 46 46 H 1.08999 * 109.46841 * 60.00371 * 27 25 11 47 47 H 1.09008 * 109.46678 * 179.97438 * 27 25 11 48 48 H 1.08990 * 109.47059 * 300.00023 * 27 25 11 49 49 H 1.08002 * 125.99166 * 180.20798 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0248 2.9844 0.8897 7 6 5.3263 4.2843 0.5364 8 6 6.2617 5.1861 1.2331 9 8 6.8505 4.8026 2.2256 10 7 6.4641 6.4355 0.7700 11 6 7.3932 7.3318 1.4626 12 1 7.3447 7.1465 2.5356 13 6 8.8172 7.0740 0.9646 14 6 9.7900 7.9885 1.7156 15 7 9.3414 9.3797 1.5673 16 6 10.1955 10.3419 1.0983 17 1 9.8035 11.2109 0.5907 18 6 11.5650 10.2003 1.2753 19 7 12.4002 10.8590 0.5002 20 14 12.2224 9.0691 2.6085 21 1 12.5196 7.7365 2.0247 22 1 13.4650 9.6474 3.1800 23 1 11.2052 8.9241 3.6807 24 6 7.9609 9.7202 1.9374 25 6 7.0070 8.7851 1.1786 26 1 7.0786 8.9781 0.1082 27 6 5.5716 9.0329 1.6471 28 6 4.5753 4.5867 -0.6215 29 7 3.8696 3.5342 -0.9311 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8575 0.6435 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 5.4307 2.4396 1.7293 38 1 5.9947 6.7413 -0.0218 39 1 8.8724 7.2832 -0.1037 40 1 9.0834 6.0326 1.1456 41 1 10.7904 7.8804 1.2967 42 1 9.8029 7.7194 2.7719 43 1 13.3573 10.7604 0.6241 44 1 7.8276 9.5894 3.0113 45 1 7.7540 10.7551 1.6647 46 1 5.5007 8.8410 2.7177 47 1 5.2971 10.0683 1.4450 48 1 4.8949 8.3663 1.1128 49 1 4.5836 5.5250 -1.1563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944493305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:19 Heat of formation + Delta-G solvation = 19.834413 kcal Electronic energy + Delta-G solvation = -28991.266314 eV Core-core repulsion = 24956.079848 eV Total energy + Delta-G solvation = -4035.186466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69102 -39.57197 -38.53816 -37.67092 -34.67595 -34.33672 -32.61847 -31.57455 -30.81463 -30.37696 -29.30236 -26.89971 -26.34287 -25.15732 -23.95715 -23.01955 -21.82725 -21.35661 -21.01792 -20.09427 -19.50297 -18.11940 -17.08383 -16.86152 -16.65933 -16.08667 -15.96699 -15.74550 -15.19714 -14.94180 -14.70971 -14.43174 -14.32876 -13.90642 -13.78180 -13.42353 -13.40059 -13.19678 -12.96370 -12.71392 -12.58460 -12.25666 -12.06234 -11.94935 -11.90208 -11.61304 -11.50714 -11.31061 -10.95794 -10.56957 -10.50031 -10.34349 -10.11687 -9.95861 -9.95450 -9.92357 -9.61808 -9.45188 -9.03853 -8.69102 -8.54301 -6.96208 -5.92338 -3.27504 1.26742 1.78930 1.94857 3.17445 3.38028 3.38701 3.50711 3.53452 3.57113 4.04621 4.28554 4.46056 4.46780 4.57129 4.62957 4.75138 4.76933 4.90093 4.94216 4.99254 5.05929 5.08078 5.10860 5.22650 5.31433 5.37284 5.45985 5.50199 5.77279 5.89600 5.93841 6.06840 6.08535 6.14016 6.18931 6.32945 6.36119 6.41289 6.48291 6.48740 6.62886 6.68740 6.74656 6.83479 6.98026 7.18953 7.73099 7.98058 8.34837 8.43072 8.96344 9.75037 10.12453 11.23422 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.002090 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.316443 B =13393.475647 C =13843.070662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.286 4.286 8 C 0.592 3.408 9 O -0.551 6.551 10 N -0.717 5.717 11 C 0.159 3.841 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.129 3.871 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.880 3.120 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.269 1.269 24 C 0.158 3.842 25 C -0.116 4.116 26 H 0.076 0.924 27 C -0.142 4.142 28 C 0.085 3.915 29 N -0.298 5.298 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.189 0.811 38 H 0.395 0.605 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.021 -18.886 -1.562 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.301 4.301 8 C 0.379 3.621 9 O -0.430 6.430 10 N -0.366 5.366 11 C 0.056 3.944 12 H 0.101 0.899 13 C -0.182 4.182 14 C 0.003 3.997 15 N -0.329 5.329 16 C -0.388 4.388 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.710 3.290 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.194 1.194 24 C 0.031 3.969 25 C -0.137 4.137 26 H 0.095 0.905 27 C -0.200 4.200 28 C -0.103 4.103 29 N -0.118 5.118 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -24.233 -19.900 -1.710 31.404 hybrid contribution 0.683 0.044 0.808 1.059 sum -23.550 -19.856 -0.902 30.817 Atomic orbital electron populations 1.22792 0.79831 1.03188 1.00439 1.87782 1.20674 1.26842 1.95617 1.22647 0.92429 0.85424 1.02150 1.21488 0.92758 0.78671 1.05780 1.48300 1.32995 1.12069 1.21029 1.23007 0.90604 0.94336 0.94127 1.20384 1.10211 0.96333 1.03154 1.17198 0.80450 0.81230 0.83263 1.90778 1.50257 1.75507 1.26420 1.45987 1.45993 1.13181 1.31463 1.20988 0.88171 0.88094 0.97181 0.89862 1.22405 0.94844 0.99627 1.01299 1.21306 0.97055 0.84353 0.96981 1.44407 1.09025 1.03607 1.75896 1.18913 0.87220 1.02478 1.30193 0.89643 1.25257 0.95952 0.97871 0.98433 1.69842 1.02441 1.45132 1.37681 0.86987 0.77914 0.79732 0.84342 1.21665 1.23193 1.19383 1.21007 0.83865 0.96640 0.95376 1.22044 0.95399 0.94377 1.01885 0.90545 1.21766 0.95932 1.01122 1.01159 1.24111 0.93521 0.97784 0.94907 1.77150 1.24501 0.96874 1.13232 0.93754 0.93647 0.89104 0.92541 0.91424 0.88298 0.87252 0.79382 0.77136 0.91622 0.92278 0.90873 0.95440 0.92816 0.95677 0.91434 0.92905 0.92582 0.93244 0.79232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.72 10.70 -35.23 -0.38 -3.10 16 3 C 0.05 0.33 6.11 37.16 0.23 0.55 16 4 C 0.13 0.82 6.86 -4.05 -0.03 0.79 16 5 N -0.36 -3.21 3.65 -60.81 -0.22 -3.43 16 6 C 0.13 1.25 11.25 -16.56 -0.19 1.06 16 7 C -0.29 -3.23 6.13 -105.07 -0.64 -3.87 16 8 C 0.59 8.37 7.78 -12.51 -0.10 8.28 16 9 O -0.55 -9.86 16.56 5.27 0.09 -9.77 16 10 N -0.72 -9.31 4.36 -54.84 -0.24 -9.55 16 11 C 0.16 2.55 1.88 -67.89 -0.13 2.42 16 12 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16 13 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 14 C 0.13 2.89 4.19 -3.71 -0.02 2.88 16 15 N -0.61 -14.26 2.77 -172.06 -0.48 -14.74 16 16 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 17 H 0.09 2.51 8.05 -52.48 -0.42 2.08 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -27.89 13.97 55.49 0.78 -27.11 16 20 Si 0.88 22.75 24.35 -169.99 -4.14 18.61 16 21 H -0.29 -7.30 6.70 56.52 0.38 -6.92 16 22 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 23 H -0.27 -6.85 6.49 56.52 0.37 -6.48 16 24 C 0.16 3.00 5.83 -3.49 -0.02 2.98 16 25 C -0.12 -1.77 2.47 -90.27 -0.22 -1.99 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 C -0.14 -1.72 9.03 37.16 0.34 -1.39 16 28 C 0.08 0.82 11.50 -16.98 -0.20 0.62 16 29 N -0.30 -3.07 12.33 30.86 0.38 -2.69 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.11 0.45 8.06 -51.93 -0.42 0.03 16 37 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.39 4.01 7.26 -40.82 -0.30 3.71 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.80 4.49 -51.93 -0.23 1.57 16 42 H 0.03 0.63 7.01 -51.92 -0.36 0.26 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 48 H 0.05 0.52 7.36 -51.93 -0.38 0.13 16 49 H 0.19 1.26 7.50 -52.49 -0.39 0.87 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -35.02 393.27 -6.54 -41.56 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.01 Total: 0.23 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.25 Total: 4.05 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.22 Total: -57.51 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.29 Total: -12.87 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.14 Total: 18.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.02 -6.54 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944493305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.398 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds