Wall clock time and date at job start Tue Mar 31 2020 19:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99914 * 2 1 4 4 C 1.53002 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46488 * 109.47200 * 179.97438 * 4 3 2 6 6 C 1.34265 * 125.75483 * 125.26715 * 5 4 3 7 7 C 1.38041 * 107.41874 * 180.14664 * 6 5 4 8 8 C 1.47433 * 126.41393 * 179.87529 * 7 6 5 9 9 O 1.21604 * 119.99858 * 359.70763 * 8 7 6 10 10 N 1.34781 * 119.99648 * 179.71210 * 8 7 6 11 11 C 1.46501 * 119.99643 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46081 * 325.02650 * 11 10 8 13 13 C 1.53043 * 109.45946 * 84.99830 * 11 10 8 14 14 C 1.53193 * 109.31436 * 181.38250 * 13 11 10 15 15 N 1.46927 * 108.77604 * 305.37159 * 14 13 11 16 16 C 1.36937 * 120.62528 * 233.58247 * 15 14 13 17 17 H 1.08004 * 119.99416 * 153.24186 * 16 15 14 18 18 C 1.38810 * 120.00322 * 333.24184 * 16 15 14 19 19 N 1.31612 * 120.00167 * 158.77940 * 18 16 15 20 20 Si 1.86802 * 119.99800 * 339.05196 * 18 16 15 21 21 H 1.48498 * 109.46929 * 95.07501 * 20 18 16 22 22 H 1.48499 * 109.47205 * 215.07093 * 20 18 16 23 23 H 1.48499 * 109.47520 * 335.07449 * 20 18 16 24 24 C 1.46922 * 118.74160 * 53.85503 * 15 14 13 25 25 C 1.53036 * 109.46233 * 205.06672 * 11 10 8 26 26 H 1.09004 * 109.49930 * 298.60350 * 25 11 10 27 27 C 1.53007 * 109.49386 * 58.66170 * 25 11 10 28 28 C 1.41286 * 107.17056 * 359.60829 * 7 6 5 29 29 N 1.30444 * 108.02367 * 0.24128 * 28 7 6 30 30 H 1.09002 * 109.47138 * 300.00262 * 1 2 3 31 31 H 1.09002 * 109.46782 * 60.00103 * 1 2 3 32 32 H 1.08996 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47048 * 59.99842 * 3 2 1 34 34 H 1.09001 * 109.46809 * 300.00126 * 3 2 1 35 35 H 1.09008 * 109.46686 * 59.99592 * 4 3 2 36 36 H 1.09002 * 109.46809 * 300.00511 * 4 3 2 37 37 H 1.08002 * 126.28847 * 359.97438 * 6 5 4 38 38 H 0.96994 * 120.00218 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.49529 * 61.43464 * 13 11 10 40 40 H 1.09003 * 109.52425 * 301.35546 * 13 11 10 41 41 H 1.08994 * 109.58501 * 185.57538 * 14 13 11 42 42 H 1.09008 * 109.58369 * 65.15368 * 14 13 11 43 43 H 0.97006 * 120.00610 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58820 * 65.92561 * 24 15 14 45 45 H 1.09000 * 109.59030 * 186.35500 * 24 15 14 46 46 H 1.08999 * 109.46841 * 60.00371 * 27 25 11 47 47 H 1.09008 * 109.46678 * 179.97438 * 27 25 11 48 48 H 1.08990 * 109.47059 * 300.00023 * 27 25 11 49 49 H 1.08002 * 125.99166 * 180.20798 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0248 2.9844 0.8897 7 6 5.3263 4.2843 0.5364 8 6 6.2617 5.1861 1.2331 9 8 6.8505 4.8026 2.2256 10 7 6.4641 6.4355 0.7700 11 6 7.3932 7.3318 1.4626 12 1 7.3447 7.1465 2.5356 13 6 8.8172 7.0740 0.9646 14 6 9.7900 7.9885 1.7156 15 7 9.3414 9.3797 1.5673 16 6 10.1955 10.3419 1.0983 17 1 9.8035 11.2109 0.5907 18 6 11.5650 10.2003 1.2753 19 7 12.4002 10.8590 0.5002 20 14 12.2224 9.0691 2.6085 21 1 12.5196 7.7365 2.0247 22 1 13.4650 9.6474 3.1800 23 1 11.2052 8.9241 3.6807 24 6 7.9609 9.7202 1.9374 25 6 7.0070 8.7851 1.1786 26 1 7.0786 8.9781 0.1082 27 6 5.5716 9.0329 1.6471 28 6 4.5753 4.5867 -0.6215 29 7 3.8696 3.5342 -0.9311 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8575 0.6435 -0.8892 36 1 3.8567 0.6439 0.8908 37 1 5.4307 2.4396 1.7293 38 1 5.9947 6.7413 -0.0218 39 1 8.8724 7.2832 -0.1037 40 1 9.0834 6.0326 1.1456 41 1 10.7904 7.8804 1.2967 42 1 9.8029 7.7194 2.7719 43 1 13.3573 10.7604 0.6241 44 1 7.8276 9.5894 3.0113 45 1 7.7540 10.7551 1.6647 46 1 5.5007 8.8410 2.7177 47 1 5.2971 10.0683 1.4450 48 1 4.8949 8.3663 1.1128 49 1 4.5836 5.5250 -1.1563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944493305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:18 Heat of formation + Delta-G solvation = -5.471387 kcal Electronic energy + Delta-G solvation = -28992.363656 eV Core-core repulsion = 24956.079848 eV Total energy + Delta-G solvation = -4036.283808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.43701 -40.79315 -39.17065 -38.93304 -36.22003 -35.01000 -34.10782 -33.31786 -32.04033 -31.38449 -30.13270 -27.78164 -27.39077 -26.67588 -24.64906 -24.20391 -23.12243 -22.96759 -21.75275 -21.25194 -20.69026 -19.02075 -18.67858 -17.69606 -17.47044 -17.34032 -16.77645 -16.58276 -16.38142 -16.06996 -15.98086 -15.62986 -15.21112 -15.07540 -15.00351 -14.79897 -14.65583 -14.29397 -14.24786 -13.83412 -13.73065 -13.54352 -13.25958 -13.06932 -12.79550 -12.73141 -12.63707 -12.36314 -12.18704 -12.09356 -12.04045 -11.85758 -11.68636 -11.45573 -11.27273 -10.90798 -10.79167 -10.68856 -10.64588 -10.05774 -9.65467 -8.94437 -8.15967 -5.46144 0.49743 1.15014 1.18458 1.30126 1.40631 1.49116 2.31616 2.41837 2.50749 2.72525 3.05139 3.35029 3.49743 3.73092 3.78751 3.84684 3.87756 3.97230 4.12026 4.14958 4.18404 4.27744 4.29441 4.44352 4.44724 4.48242 4.59875 4.61942 4.63956 4.66645 4.73695 4.82323 4.82757 4.86328 4.95101 4.97299 5.10841 5.17546 5.23526 5.36554 5.38747 5.55035 5.62553 5.75251 5.87535 6.01482 6.14101 6.46609 6.72159 6.91655 7.37858 7.62988 8.04365 9.03539 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.002090 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.316443 B =13393.475647 C =13843.070662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.137 3.863 7 C -0.309 4.309 8 C 0.594 3.406 9 O -0.593 6.593 10 N -0.704 5.704 11 C 0.170 3.830 12 H 0.068 0.932 13 C -0.131 4.131 14 C 0.126 3.874 15 N -0.618 5.618 16 C -0.243 4.243 17 H 0.061 0.939 18 C -0.031 4.031 19 N -0.953 5.953 20 Si 0.936 3.064 21 H -0.283 1.283 22 H -0.310 1.310 23 H -0.263 1.263 24 C 0.150 3.850 25 C -0.103 4.103 26 H 0.078 0.922 27 C -0.134 4.134 28 C 0.092 3.908 29 N -0.318 5.318 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.206 0.794 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.261 0.739 44 H 0.031 0.969 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.658 -20.637 -1.465 33.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.020 4.020 4 C 0.009 3.991 5 N -0.138 5.138 6 C -0.015 4.015 7 C -0.324 4.324 8 C 0.383 3.617 9 O -0.475 6.475 10 N -0.354 5.354 11 C 0.065 3.935 12 H 0.086 0.914 13 C -0.171 4.171 14 C 0.000 4.000 15 N -0.342 5.342 16 C -0.373 4.373 17 H 0.079 0.921 18 C -0.226 4.226 19 N -0.600 5.600 20 Si 0.766 3.234 21 H -0.210 1.210 22 H -0.238 1.238 23 H -0.188 1.188 24 C 0.025 3.975 25 C -0.123 4.123 26 H 0.096 0.904 27 C -0.192 4.192 28 C -0.096 4.096 29 N -0.138 5.138 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.223 0.777 38 H 0.249 0.751 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -26.957 -21.681 -1.636 34.633 hybrid contribution 1.378 0.541 0.745 1.658 sum -25.579 -21.140 -0.891 33.196 Atomic orbital electron populations 1.22968 0.78694 1.04268 1.00949 1.87755 1.21996 1.27031 1.95681 1.22545 0.92556 0.85264 1.01667 1.21729 0.92574 0.77565 1.07196 1.48482 1.32445 1.12547 1.20279 1.23313 0.89955 0.94032 0.94193 1.20195 1.11110 0.96733 1.04338 1.17533 0.80147 0.81358 0.82665 1.90758 1.52054 1.76280 1.28384 1.45707 1.45299 1.12630 1.31779 1.20653 0.87250 0.89125 0.96463 0.91389 1.22246 0.95815 0.98470 1.00614 1.21266 0.96964 0.84566 0.97159 1.44527 1.10208 1.03340 1.76137 1.18908 0.87734 1.02193 1.28419 0.92113 1.25801 0.96473 1.00017 1.00335 1.69950 1.02575 1.47869 1.39579 0.86064 0.77009 0.78338 0.81987 1.20981 1.23849 1.18784 1.21248 0.82142 0.97810 0.96280 1.21849 0.96400 0.92679 1.01388 0.90369 1.21710 0.93699 1.02523 1.01245 1.24503 0.92365 0.98556 0.94173 1.77141 1.25143 0.97414 1.14053 0.93136 0.93256 0.87830 0.92558 0.92359 0.87806 0.84990 0.77736 0.75133 0.91722 0.92335 0.93342 0.95607 0.93038 0.95053 0.91469 0.93084 0.91415 0.90920 0.76697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -4.97 10.70 -148.98 -1.59 -6.57 16 3 C 0.06 0.63 6.11 71.98 0.44 1.07 16 4 C 0.13 1.29 6.86 86.38 0.59 1.88 16 5 N -0.36 -5.48 3.65 -346.30 -1.26 -6.75 16 6 C 0.14 2.33 11.25 84.27 0.95 3.27 16 7 C -0.31 -6.26 6.13 -20.15 -0.12 -6.39 16 8 C 0.59 15.65 7.78 86.66 0.67 16.33 16 9 O -0.59 -20.53 16.56 -4.04 -0.07 -20.60 16 10 N -0.70 -16.52 4.36 -445.66 -1.94 -18.46 16 11 C 0.17 5.13 1.88 45.02 0.08 5.21 16 12 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 13 C -0.13 -4.76 5.65 30.67 0.17 -4.58 16 14 C 0.13 5.60 4.19 86.36 0.36 5.97 16 15 N -0.62 -28.91 2.77 -698.26 -1.94 -30.84 16 16 C -0.24 -13.67 10.04 84.03 0.84 -12.83 16 17 H 0.06 3.67 8.05 -2.91 -0.02 3.64 16 18 C -0.03 -1.85 5.23 84.86 0.44 -1.41 16 19 N -0.95 -60.15 13.97 21.65 0.30 -59.85 16 20 Si 0.94 47.94 24.35 68.60 1.67 49.61 16 21 H -0.28 -14.01 6.70 99.48 0.67 -13.35 16 22 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 23 H -0.26 -13.05 6.49 99.48 0.65 -12.41 16 24 C 0.15 5.54 5.83 86.51 0.50 6.04 16 25 C -0.10 -2.89 2.47 -10.57 -0.03 -2.92 16 26 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 27 C -0.13 -2.79 9.03 71.98 0.65 -2.14 16 28 C 0.09 1.52 11.50 85.65 0.99 2.50 16 29 N -0.32 -5.80 12.33 -56.28 -0.69 -6.49 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.13 0.71 8.06 -2.39 -0.02 0.69 16 37 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.41 6.95 7.26 -92.71 -0.67 6.28 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 2.39 4.49 -2.39 -0.01 2.37 16 42 H 0.03 1.16 7.01 -2.38 -0.02 1.14 16 43 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.07 1.21 7.36 -2.39 -0.02 1.19 16 49 H 0.22 2.10 7.50 -2.91 -0.02 2.08 16 Total: -1.00 -76.86 393.27 2.45 -74.41 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.17 Total: 12.08 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 7.80 Total: 13.45 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.53 Total: -122.39 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.66 Total: -27.16 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.67 Total: 49.61 kcal Total: -76.86 2.45 -74.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944493305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.939 kcal (2) G-P(sol) polarization free energy of solvation -76.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds