Wall clock time and date at job start Tue Mar 31 2020 19:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00101 * 2 1 4 4 C 1.52997 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.47098 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75091 * 124.99699 * 5 4 3 7 7 C 1.38044 * 107.41075 * 179.97438 * 6 5 4 8 8 C 1.47429 * 126.41120 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00058 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00113 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.45903 * 35.00214 * 11 10 8 13 13 C 1.53043 * 109.46074 * 275.03433 * 11 10 8 14 14 C 1.53191 * 109.31445 * 178.60180 * 13 11 10 15 15 N 1.46926 * 108.76525 * 54.64879 * 14 13 11 16 16 C 1.36939 * 120.62865 * 126.40238 * 15 14 13 17 17 H 1.07993 * 120.00243 * 332.58629 * 16 15 14 18 18 C 1.38813 * 119.99717 * 152.57891 * 16 15 14 19 19 N 1.31621 * 120.00077 * 159.32427 * 18 16 15 20 20 Si 1.86798 * 120.00253 * 339.31820 * 18 16 15 21 21 H 1.48498 * 109.47267 * 92.95027 * 20 18 16 22 22 H 1.48499 * 109.47600 * 212.95428 * 20 18 16 23 23 H 1.48504 * 109.47189 * 332.95019 * 20 18 16 24 24 C 1.46928 * 118.74163 * 306.38915 * 15 14 13 25 25 C 1.53042 * 109.46030 * 154.97728 * 11 10 8 26 26 H 1.09001 * 109.49706 * 61.43618 * 25 11 10 27 27 C 1.53001 * 109.49587 * 301.33708 * 25 11 10 28 28 C 1.41288 * 107.17613 * 0.26393 * 7 6 5 29 29 N 1.30449 * 108.01792 * 359.55411 * 28 7 6 30 30 H 1.08990 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46637 * 300.00558 * 1 2 3 32 32 H 1.09008 * 109.46866 * 60.00096 * 1 2 3 33 33 H 1.08996 * 109.47433 * 59.99632 * 3 2 1 34 34 H 1.09003 * 109.47230 * 299.99520 * 3 2 1 35 35 H 1.09008 * 109.47458 * 60.00098 * 4 3 2 36 36 H 1.08993 * 109.47719 * 299.99643 * 4 3 2 37 37 H 1.07998 * 126.29269 * 359.97296 * 6 5 4 38 38 H 0.97001 * 120.00165 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.49463 * 298.56235 * 13 11 10 40 40 H 1.08997 * 109.49955 * 58.66169 * 13 11 10 41 41 H 1.09002 * 109.59783 * 294.86609 * 14 13 11 42 42 H 1.08997 * 109.58825 * 174.43313 * 14 13 11 43 43 H 0.96998 * 119.99840 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.58270 * 293.81765 * 24 15 14 45 45 H 1.09000 * 109.58490 * 173.39609 * 24 15 14 46 46 H 1.09005 * 109.46727 * 59.99967 * 27 25 11 47 47 H 1.08998 * 109.47081 * 179.97438 * 27 25 11 48 48 H 1.08995 * 109.47208 * 300.00240 * 27 25 11 49 49 H 1.07996 * 125.98728 * 179.70207 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1315 2.5229 0.0000 6 6 5.0211 2.9858 0.8926 7 6 5.3272 4.2837 0.5358 8 6 6.2623 5.1856 1.2327 9 8 6.8508 4.8022 2.2254 10 7 6.4656 6.4347 0.7691 11 6 7.3952 7.3307 1.4614 12 1 8.2287 6.7521 1.8595 13 6 6.6670 8.0324 2.6101 14 6 7.6506 8.9419 3.3532 15 7 8.2727 9.8558 2.3855 16 6 8.2479 11.2098 2.5890 17 1 7.4485 11.6550 3.1626 18 6 9.2503 12.0099 2.0581 19 7 9.0430 13.2986 1.8882 20 14 10.8934 11.2579 1.5849 21 1 10.8680 10.8755 0.1502 22 1 11.9756 12.2486 1.8140 23 1 11.1430 10.0516 2.4143 24 6 8.9223 9.2896 1.1954 25 6 7.9244 8.3760 0.4767 26 1 7.0941 8.9715 0.0972 27 6 8.6236 7.6724 -0.6882 28 6 4.5715 4.5883 -0.6185 29 7 3.8699 3.5340 -0.9313 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3632 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6887 1.8464 0.8899 34 1 1.6888 1.8463 -0.8900 35 1 3.8575 0.6434 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4233 2.4426 1.7350 38 1 5.9964 6.7404 -0.0229 39 1 5.8487 8.6312 2.2102 40 1 6.2701 7.2866 3.2988 41 1 8.4206 8.3353 3.8300 42 1 7.1164 9.5179 4.1087 43 1 9.7434 13.8576 1.5169 44 1 9.7959 8.7114 1.4963 45 1 9.2270 10.0951 0.5274 46 1 7.9139 7.0203 -1.1974 47 1 8.9999 8.4172 -1.3894 48 1 9.4545 7.0784 -0.3078 49 1 4.5759 5.5284 -1.1501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944493307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:29 Heat of formation + Delta-G solvation = 19.412589 kcal Electronic energy + Delta-G solvation = -29009.655634 eV Core-core repulsion = 24974.450877 eV Total energy + Delta-G solvation = -4035.204757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.69500 -39.58066 -38.53364 -37.69359 -34.64349 -34.32830 -32.41608 -31.93402 -30.80188 -30.31295 -29.29536 -26.89539 -26.19913 -25.16513 -23.97144 -23.19174 -22.13737 -21.10015 -20.77524 -20.04734 -19.56829 -18.18053 -17.14326 -16.87805 -16.65161 -16.06462 -16.00533 -15.71537 -15.22610 -14.96643 -14.65271 -14.38647 -14.26991 -14.03761 -13.65388 -13.57509 -13.32381 -13.16770 -13.00930 -12.62947 -12.52596 -12.32888 -12.24864 -11.94044 -11.87245 -11.60642 -11.42730 -11.30710 -10.84317 -10.63621 -10.45884 -10.33685 -10.25291 -10.03770 -9.96101 -9.82141 -9.63456 -9.43679 -9.04592 -8.65475 -8.60443 -6.96316 -5.93470 -3.28960 1.26155 1.78627 1.94689 3.17627 3.32963 3.38818 3.49501 3.50899 3.54247 4.04482 4.28905 4.45508 4.46879 4.54498 4.62958 4.75916 4.77976 4.90190 4.94313 4.98468 5.06137 5.09109 5.11758 5.22510 5.33389 5.39824 5.48539 5.48967 5.75956 5.92742 5.95277 6.07673 6.08770 6.17711 6.18400 6.36118 6.36308 6.43309 6.44489 6.48555 6.64500 6.68250 6.74296 6.83550 6.97528 7.18683 7.72941 7.98039 8.34671 8.42281 8.95882 9.73745 10.11689 11.22488 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.002037 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.618640 B =13742.269203 C =13906.794542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.286 4.286 8 C 0.592 3.408 9 O -0.552 6.552 10 N -0.717 5.717 11 C 0.159 3.841 12 H 0.083 0.917 13 C -0.142 4.142 14 C 0.150 3.850 15 N -0.606 5.606 16 C -0.258 4.258 17 H 0.086 0.914 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.880 3.120 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.136 3.864 25 C -0.115 4.115 26 H 0.078 0.922 27 C -0.145 4.145 28 C 0.085 3.915 29 N -0.298 5.298 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.189 0.811 38 H 0.395 0.605 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 -25.529 -6.451 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.301 4.301 8 C 0.379 3.621 9 O -0.430 6.430 10 N -0.366 5.366 11 C 0.056 3.944 12 H 0.101 0.899 13 C -0.182 4.182 14 C 0.024 3.976 15 N -0.329 5.329 16 C -0.386 4.386 17 H 0.103 0.897 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.710 3.290 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.009 3.991 25 C -0.136 4.136 26 H 0.096 0.904 27 C -0.203 4.203 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.229 0.771 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.385 -26.432 -6.578 30.804 hybrid contribution 1.053 0.450 -0.195 1.161 sum -13.332 -25.982 -6.773 29.978 Atomic orbital electron populations 1.22793 0.79809 1.03182 1.00472 1.87777 1.20694 1.26840 1.95624 1.22650 0.92416 0.85435 1.02195 1.21490 0.92779 0.78654 1.05745 1.48311 1.33160 1.12073 1.20855 1.23004 0.90623 0.94388 0.94068 1.20386 1.10141 0.96368 1.03203 1.17192 0.80550 0.81098 0.83258 1.90773 1.50083 1.75933 1.26252 1.45997 1.46143 1.13080 1.31389 1.20992 0.91459 0.89531 0.92464 0.89852 1.22393 0.99619 0.98707 0.97464 1.20908 0.93775 0.91385 0.91553 1.44405 1.65890 1.03276 1.19375 1.18929 1.06600 0.79947 1.33168 0.89659 1.25280 0.97912 0.94993 0.99401 1.69837 1.33502 1.04992 1.46816 0.86990 0.85632 0.78508 0.77826 1.21574 1.23164 1.19473 1.21369 0.93080 0.95450 0.89173 1.21979 1.00267 0.96238 0.95135 0.90370 1.21792 1.00334 1.00102 0.98036 1.24121 0.93475 0.97737 0.94997 1.77156 1.24476 0.96798 1.13320 0.89107 0.93715 0.93651 0.92502 0.91422 0.88317 0.87254 0.79376 0.77108 0.91848 0.92165 0.95695 0.91632 0.92811 0.95509 0.90569 0.93066 0.92558 0.92925 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.73 10.70 -35.23 -0.38 -3.10 16 3 C 0.05 0.33 6.11 37.16 0.23 0.55 16 4 C 0.13 0.80 6.86 -4.04 -0.03 0.78 16 5 N -0.36 -3.16 3.65 -60.80 -0.22 -3.38 16 6 C 0.13 1.22 11.25 -16.56 -0.19 1.04 16 7 C -0.29 -3.19 6.13 -105.07 -0.64 -3.83 16 8 C 0.59 8.24 7.78 -12.52 -0.10 8.14 16 9 O -0.55 -9.63 16.56 5.27 0.09 -9.55 16 10 N -0.72 -9.30 4.36 -54.84 -0.24 -9.54 16 11 C 0.16 2.55 1.88 -67.88 -0.13 2.42 16 12 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16 13 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 14 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 15 N -0.61 -14.27 2.77 -172.32 -0.48 -14.74 16 16 C -0.26 -7.16 10.03 -15.06 -0.15 -7.31 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 19 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 20 Si 0.88 22.29 24.35 -169.99 -4.14 18.15 16 21 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 22 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 23 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 24 C 0.14 2.89 3.49 -3.71 -0.01 2.88 16 25 C -0.12 -1.93 2.46 -90.50 -0.22 -2.15 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 C -0.14 -2.04 9.03 37.16 0.34 -1.70 16 28 C 0.08 0.82 11.50 -16.98 -0.20 0.62 16 29 N -0.30 -3.06 12.33 30.86 0.38 -2.67 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.11 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.40 4.08 7.26 -40.82 -0.30 3.79 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 45 H 0.08 1.78 4.50 -51.93 -0.23 1.55 16 46 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.19 1.28 7.50 -52.49 -0.39 0.89 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -34.60 393.37 -6.54 -41.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.01 Total: 0.99 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.25 Total: 3.69 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.22 Total: -57.25 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.29 Total: -12.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.60 -6.54 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944493307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.551 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds