Wall clock time and date at job start Tue Mar 31 2020 19:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00101 * 2 1 4 4 C 1.52997 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.47098 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75091 * 124.99699 * 5 4 3 7 7 C 1.38044 * 107.41075 * 179.97438 * 6 5 4 8 8 C 1.47429 * 126.41120 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00058 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00113 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.45903 * 35.00214 * 11 10 8 13 13 C 1.53043 * 109.46074 * 275.03433 * 11 10 8 14 14 C 1.53191 * 109.31445 * 178.60180 * 13 11 10 15 15 N 1.46926 * 108.76525 * 54.64879 * 14 13 11 16 16 C 1.36939 * 120.62865 * 126.40238 * 15 14 13 17 17 H 1.07993 * 120.00243 * 332.58629 * 16 15 14 18 18 C 1.38813 * 119.99717 * 152.57891 * 16 15 14 19 19 N 1.31621 * 120.00077 * 159.32427 * 18 16 15 20 20 Si 1.86798 * 120.00253 * 339.31820 * 18 16 15 21 21 H 1.48498 * 109.47267 * 92.95027 * 20 18 16 22 22 H 1.48499 * 109.47600 * 212.95428 * 20 18 16 23 23 H 1.48504 * 109.47189 * 332.95019 * 20 18 16 24 24 C 1.46928 * 118.74163 * 306.38915 * 15 14 13 25 25 C 1.53042 * 109.46030 * 154.97728 * 11 10 8 26 26 H 1.09001 * 109.49706 * 61.43618 * 25 11 10 27 27 C 1.53001 * 109.49587 * 301.33708 * 25 11 10 28 28 C 1.41288 * 107.17613 * 0.26393 * 7 6 5 29 29 N 1.30449 * 108.01792 * 359.55411 * 28 7 6 30 30 H 1.08990 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46637 * 300.00558 * 1 2 3 32 32 H 1.09008 * 109.46866 * 60.00096 * 1 2 3 33 33 H 1.08996 * 109.47433 * 59.99632 * 3 2 1 34 34 H 1.09003 * 109.47230 * 299.99520 * 3 2 1 35 35 H 1.09008 * 109.47458 * 60.00098 * 4 3 2 36 36 H 1.08993 * 109.47719 * 299.99643 * 4 3 2 37 37 H 1.07998 * 126.29269 * 359.97296 * 6 5 4 38 38 H 0.97001 * 120.00165 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.49463 * 298.56235 * 13 11 10 40 40 H 1.08997 * 109.49955 * 58.66169 * 13 11 10 41 41 H 1.09002 * 109.59783 * 294.86609 * 14 13 11 42 42 H 1.08997 * 109.58825 * 174.43313 * 14 13 11 43 43 H 0.96998 * 119.99840 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.58270 * 293.81765 * 24 15 14 45 45 H 1.09000 * 109.58490 * 173.39609 * 24 15 14 46 46 H 1.09005 * 109.46727 * 59.99967 * 27 25 11 47 47 H 1.08998 * 109.47081 * 179.97438 * 27 25 11 48 48 H 1.08995 * 109.47208 * 300.00240 * 27 25 11 49 49 H 1.07996 * 125.98728 * 179.70207 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1315 2.5229 0.0000 6 6 5.0211 2.9858 0.8926 7 6 5.3272 4.2837 0.5358 8 6 6.2623 5.1856 1.2327 9 8 6.8508 4.8022 2.2254 10 7 6.4656 6.4347 0.7691 11 6 7.3952 7.3307 1.4614 12 1 8.2287 6.7521 1.8595 13 6 6.6670 8.0324 2.6101 14 6 7.6506 8.9419 3.3532 15 7 8.2727 9.8558 2.3855 16 6 8.2479 11.2098 2.5890 17 1 7.4485 11.6550 3.1626 18 6 9.2503 12.0099 2.0581 19 7 9.0430 13.2986 1.8882 20 14 10.8934 11.2579 1.5849 21 1 10.8680 10.8755 0.1502 22 1 11.9756 12.2486 1.8140 23 1 11.1430 10.0516 2.4143 24 6 8.9223 9.2896 1.1954 25 6 7.9244 8.3760 0.4767 26 1 7.0941 8.9715 0.0972 27 6 8.6236 7.6724 -0.6882 28 6 4.5715 4.5883 -0.6185 29 7 3.8699 3.5340 -0.9313 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3632 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6887 1.8464 0.8899 34 1 1.6888 1.8463 -0.8900 35 1 3.8575 0.6434 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4233 2.4426 1.7350 38 1 5.9964 6.7404 -0.0229 39 1 5.8487 8.6312 2.2102 40 1 6.2701 7.2866 3.2988 41 1 8.4206 8.3353 3.8300 42 1 7.1164 9.5179 4.1087 43 1 9.7434 13.8576 1.5169 44 1 9.7959 8.7114 1.4963 45 1 9.2270 10.0951 0.5274 46 1 7.9139 7.0203 -1.1974 47 1 8.9999 8.4172 -1.3894 48 1 9.4545 7.0784 -0.3078 49 1 4.5759 5.5284 -1.1501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944493307.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:28 Heat of formation + Delta-G solvation = -5.421780 kcal Electronic energy + Delta-G solvation = -29010.732533 eV Core-core repulsion = 24974.450877 eV Total energy + Delta-G solvation = -4036.281657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42920 -40.79886 -39.18345 -38.93503 -36.15824 -34.99657 -34.01570 -33.55360 -31.98041 -31.37251 -30.12964 -27.65301 -27.38661 -26.73697 -24.79497 -24.35661 -23.33244 -22.38962 -21.73227 -21.20403 -20.84639 -19.16743 -18.63419 -17.65421 -17.46902 -17.34368 -16.71706 -16.55647 -16.43246 -16.05532 -15.95378 -15.52927 -15.28871 -15.06567 -14.98383 -14.79554 -14.60505 -14.33914 -14.24254 -14.01562 -13.76221 -13.39490 -13.19322 -13.05536 -12.96230 -12.72623 -12.50267 -12.36019 -12.33610 -12.03246 -12.02069 -11.89652 -11.66102 -11.51335 -11.24722 -10.91904 -10.79159 -10.64080 -10.63417 -10.04877 -9.64692 -8.93818 -8.14760 -5.46573 0.50933 1.14608 1.20408 1.30462 1.43453 1.52069 2.32348 2.42754 2.51697 2.72458 3.06723 3.34272 3.50423 3.70158 3.79581 3.85230 3.88246 4.00181 4.09543 4.12755 4.18903 4.29856 4.33069 4.44487 4.48094 4.48415 4.56935 4.61744 4.62373 4.67753 4.72245 4.77413 4.82346 4.86479 4.92144 5.02168 5.05881 5.12548 5.25000 5.33608 5.39049 5.49194 5.62205 5.76247 5.88670 6.01282 6.14502 6.47351 6.72661 6.92487 7.38362 7.63211 8.04060 9.04958 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.002037 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.618640 B =13742.269203 C =13906.794542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.138 3.862 7 C -0.309 4.309 8 C 0.595 3.405 9 O -0.591 6.591 10 N -0.705 5.705 11 C 0.170 3.830 12 H 0.068 0.932 13 C -0.129 4.129 14 C 0.146 3.854 15 N -0.619 5.619 16 C -0.247 4.247 17 H 0.053 0.947 18 C -0.032 4.032 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.312 1.312 23 H -0.266 1.266 24 C 0.129 3.871 25 C -0.104 4.104 26 H 0.078 0.922 27 C -0.140 4.140 28 C 0.091 3.909 29 N -0.319 5.319 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.207 0.793 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.058 0.942 43 H 0.261 0.739 44 H 0.028 0.972 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.051 0.949 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 -28.400 -7.817 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.014 4.014 7 C -0.324 4.324 8 C 0.384 3.616 9 O -0.473 6.473 10 N -0.355 5.355 11 C 0.065 3.935 12 H 0.086 0.914 13 C -0.169 4.169 14 C 0.021 3.979 15 N -0.343 5.343 16 C -0.377 4.377 17 H 0.071 0.929 18 C -0.227 4.227 19 N -0.601 5.601 20 Si 0.770 3.230 21 H -0.195 1.195 22 H -0.241 1.241 23 H -0.191 1.191 24 C 0.004 3.996 25 C -0.125 4.125 26 H 0.097 0.903 27 C -0.198 4.198 28 C -0.097 4.097 29 N -0.138 5.138 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.224 0.776 38 H 0.247 0.753 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -14.948 -29.362 -7.991 33.903 hybrid contribution 1.076 1.256 0.296 1.680 sum -13.872 -28.107 -7.695 32.274 Atomic orbital electron populations 1.22967 0.78729 1.04277 1.00914 1.87751 1.21956 1.26999 1.95676 1.22553 0.92714 0.85270 1.01601 1.21731 0.92421 0.77561 1.07273 1.48494 1.32626 1.12539 1.20115 1.23324 0.89910 0.94043 0.94115 1.20198 1.11030 0.96791 1.04348 1.17493 0.80222 0.81162 0.82679 1.90755 1.51754 1.76662 1.28098 1.45721 1.45615 1.12541 1.31647 1.20637 0.91430 0.89391 0.91996 0.91353 1.22216 0.98689 0.98155 0.97815 1.21026 0.94298 0.91245 0.91370 1.44510 1.66395 1.02197 1.21168 1.18863 1.05283 0.82012 1.31501 0.92876 1.25855 1.00967 0.95301 1.00552 1.69958 1.34424 1.06502 1.49209 0.85996 0.81000 0.77349 0.78651 1.19497 1.24068 1.19101 1.21422 0.94329 0.95547 0.88297 1.21780 0.99243 0.95767 0.95705 0.90316 1.21767 1.00786 1.00309 0.96903 1.24495 0.92399 0.98463 0.94348 1.77146 1.25119 0.97365 1.14199 0.87773 0.93205 0.93294 0.92694 0.92419 0.87665 0.84921 0.77598 0.75251 0.91857 0.91533 0.95337 0.92303 0.92964 0.95400 0.92563 0.90183 0.92366 0.92982 0.76858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -4.98 10.70 -148.98 -1.59 -6.57 16 3 C 0.06 0.63 6.11 71.98 0.44 1.07 16 4 C 0.13 1.25 6.86 86.38 0.59 1.84 16 5 N -0.36 -5.36 3.65 -346.28 -1.26 -6.62 16 6 C 0.14 2.26 11.25 84.28 0.95 3.21 16 7 C -0.31 -6.13 6.13 -20.15 -0.12 -6.25 16 8 C 0.60 15.28 7.78 86.66 0.67 15.95 16 9 O -0.59 -19.75 16.56 -4.05 -0.07 -19.82 16 10 N -0.71 -16.45 4.36 -445.66 -1.94 -18.39 16 11 C 0.17 5.12 1.88 45.02 0.08 5.20 16 12 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 13 C -0.13 -4.25 5.65 30.67 0.17 -4.08 16 14 C 0.15 5.84 6.52 86.36 0.56 6.40 16 15 N -0.62 -29.07 2.77 -699.11 -1.94 -31.01 16 16 C -0.25 -14.00 10.03 84.03 0.84 -13.15 16 17 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 18 C -0.03 -1.86 5.23 84.86 0.44 -1.42 16 19 N -0.95 -59.77 13.97 21.65 0.30 -59.46 16 20 Si 0.94 46.52 24.35 68.60 1.67 48.19 16 21 H -0.27 -12.31 6.62 99.48 0.66 -11.65 16 22 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 23 H -0.27 -12.84 6.64 99.48 0.66 -12.18 16 24 C 0.13 5.37 3.49 86.36 0.30 5.67 16 25 C -0.10 -3.27 2.46 -10.72 -0.03 -3.29 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.14 -3.49 9.03 71.98 0.65 -2.84 16 28 C 0.09 1.50 11.50 85.65 0.99 2.48 16 29 N -0.32 -5.79 12.33 -56.28 -0.69 -6.48 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.13 0.65 8.06 -2.39 -0.02 0.63 16 37 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.41 7.10 7.26 -92.71 -0.67 6.43 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.03 1.16 7.08 -2.39 -0.02 1.14 16 45 H 0.06 2.56 4.50 -2.39 -0.01 2.55 16 46 H 0.08 1.55 7.36 -2.38 -0.02 1.53 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.22 2.15 7.50 -2.91 -0.02 2.13 16 Total: -1.00 -75.77 393.37 2.45 -73.32 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.18 Total: 14.60 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.80 Total: 12.25 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -5.53 Total: -121.97 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -1.66 Total: -26.39 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -75.77 2.45 -73.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944493307.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.896 kcal (2) G-P(sol) polarization free energy of solvation -75.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds