Wall clock time and date at job start Tue Mar 31 2020 19:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35854 * 116.99768 * 2 1 4 4 N 1.30806 * 126.06119 * 0.13472 * 3 2 1 5 5 N 1.39925 * 108.87869 * 180.26371 * 4 3 2 6 6 C 1.46493 * 125.68685 * 179.73058 * 5 4 3 7 7 C 1.34163 * 108.61955 * 359.75752 * 5 4 3 8 8 C 1.38133 * 107.51011 * 359.97438 * 7 5 4 9 9 C 1.47246 * 126.44387 * 179.97438 * 8 7 5 10 10 O 1.21623 * 120.00310 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00265 * 359.74186 * 9 8 7 12 12 C 1.46495 * 120.00200 * 180.27662 * 11 9 8 13 13 H 1.08997 * 109.47074 * 35.00865 * 12 11 9 14 14 C 1.52996 * 109.47254 * 275.00264 * 12 11 9 15 15 C 1.53007 * 109.47055 * 155.00334 * 12 11 9 16 16 C 1.53038 * 109.45797 * 300.06919 * 15 12 11 17 17 C 1.53196 * 109.31063 * 178.61221 * 16 15 12 18 18 N 1.46927 * 108.77171 * 54.63863 * 17 16 15 19 19 C 1.36942 * 120.63048 * 126.41398 * 18 17 16 20 20 H 1.07998 * 119.99796 * 332.60168 * 19 18 17 21 21 C 1.38810 * 119.99796 * 152.60062 * 19 18 17 22 22 N 1.31617 * 119.99894 * 159.36179 * 21 19 18 23 23 Si 1.86801 * 120.00227 * 339.36167 * 21 19 18 24 24 H 1.48502 * 109.46911 * 92.91332 * 23 21 19 25 25 H 1.48503 * 109.47307 * 212.90670 * 23 21 19 26 26 H 1.48496 * 109.47129 * 332.91220 * 23 21 19 27 27 C 1.46926 * 118.73739 * 306.38530 * 18 17 16 28 28 C 1.53045 * 109.45792 * 180.02562 * 15 12 11 29 29 H 1.09005 * 109.47298 * 60.00278 * 1 2 3 30 30 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47379 * 300.00527 * 1 2 3 32 32 H 1.08997 * 109.47369 * 270.02789 * 6 5 4 33 33 H 1.09006 * 109.47444 * 30.02749 * 6 5 4 34 34 H 1.08997 * 109.47219 * 150.02612 * 6 5 4 35 35 H 1.08003 * 126.23824 * 180.02562 * 7 5 4 36 36 H 0.97005 * 119.99547 * 0.28054 * 11 9 8 37 37 H 1.09000 * 109.47113 * 60.00129 * 14 12 11 38 38 H 1.09006 * 109.46933 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47771 * 299.99782 * 14 12 11 40 40 H 1.08996 * 109.46205 * 60.02880 * 15 12 11 41 41 H 1.09001 * 109.50386 * 298.56458 * 16 15 12 42 42 H 1.09001 * 109.49872 * 58.66411 * 16 15 12 43 43 H 1.08997 * 109.58824 * 294.85135 * 17 16 15 44 44 H 1.09005 * 109.58854 * 174.41945 * 17 16 15 45 45 H 0.97006 * 120.00345 * 180.02562 * 22 21 19 46 46 H 1.08992 * 109.59076 * 293.82587 * 27 18 17 47 47 H 1.09011 * 109.58488 * 173.39721 * 27 18 17 48 48 H 1.08994 * 109.49906 * 301.33266 * 28 15 12 49 49 H 1.09002 * 109.49634 * 61.43552 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4531 2.3766 0.0025 5 7 2.4282 3.3801 -0.0046 6 6 2.1704 4.8221 -0.0100 7 6 3.6385 2.8012 -0.0061 8 6 3.4451 1.4335 0.0005 9 6 4.4955 0.4016 0.0010 10 8 4.1912 -0.7760 0.0067 11 7 5.7942 0.7618 -0.0108 12 6 6.8391 -0.2649 -0.0164 13 1 6.5035 -1.1216 -0.6008 14 6 7.1266 -0.7080 1.4195 15 6 8.1142 0.3085 -0.6382 16 6 7.8258 0.7531 -2.0739 17 6 9.0953 1.3583 -2.6814 18 7 10.1886 0.3843 -2.5594 19 6 10.9126 0.0068 -3.6587 20 1 10.4624 0.0413 -4.6397 21 6 12.2252 -0.4203 -3.5120 22 7 12.7883 -1.1510 -4.4509 23 14 13.1925 0.0419 -1.9823 24 1 13.0562 -1.0331 -0.9669 25 1 14.6252 0.2110 -2.3347 26 1 12.6652 1.3151 -1.4291 27 6 10.4906 -0.1764 -1.2353 28 6 9.2054 -0.7646 -0.6446 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.1031 5.1753 -1.0390 33 1 1.2321 5.0255 0.5060 34 1 2.9843 5.3386 0.4989 35 1 4.5903 3.3116 -0.0108 36 1 6.0369 1.7010 -0.0154 37 1 6.2183 -1.1165 1.8624 38 1 7.9038 -1.4723 1.4151 39 1 7.4623 0.1487 2.0038 40 1 8.4499 1.1649 -0.0535 41 1 7.5139 -0.1075 -2.6657 42 1 7.0321 1.5002 -2.0710 43 1 9.3575 2.2708 -2.1461 44 1 8.9244 1.5857 -3.7337 45 1 13.7055 -1.4498 -4.3483 46 1 10.8665 0.6110 -0.5821 47 1 11.2403 -0.9617 -1.3334 48 1 9.3938 -1.0979 0.3759 49 1 8.8802 -1.6106 -1.2500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997255899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:47 Heat of formation + Delta-G solvation = 1.502594 kcal Electronic energy + Delta-G solvation = -29705.308797 eV Core-core repulsion = 25669.327404 eV Total energy + Delta-G solvation = -4035.981393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.51739 -40.68773 -39.35313 -39.30858 -36.77342 -34.50552 -33.84919 -33.14768 -31.91571 -31.57191 -30.19052 -28.82863 -27.23707 -27.00465 -24.77510 -24.21072 -23.49781 -22.18185 -21.72591 -21.28154 -20.76113 -19.10272 -18.68730 -17.94905 -17.36233 -17.27577 -16.96168 -16.45476 -16.02636 -15.93377 -15.87287 -15.62765 -15.32800 -15.16260 -15.00602 -14.63353 -14.39113 -14.27518 -13.93480 -13.68456 -13.56017 -13.51849 -13.43962 -13.29242 -12.86184 -12.67543 -12.53668 -12.36603 -12.15848 -12.15062 -11.96598 -11.92153 -11.59194 -11.45366 -11.25763 -11.11679 -10.85479 -10.60743 -10.23907 -9.98596 -9.47572 -8.86742 -8.13006 -5.44002 0.51514 1.13387 1.28389 1.34216 1.44390 1.54580 2.17260 2.45744 2.45973 2.51286 3.09715 3.41076 3.43064 3.73523 3.83092 3.96593 4.01529 4.22524 4.29325 4.30903 4.34950 4.42399 4.45144 4.50749 4.53178 4.55897 4.58119 4.63644 4.65724 4.73941 4.78043 4.79975 4.88785 4.93180 5.06498 5.07584 5.16672 5.19560 5.26410 5.34857 5.44341 5.58833 5.71683 5.88252 5.91273 6.16144 6.16255 6.50311 6.78686 6.97907 7.46100 7.68747 8.08116 9.07327 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.002497 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.980016 B =11212.138559 C =11652.210592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.290 3.710 4 N -0.373 5.373 5 N -0.341 5.341 6 C 0.087 3.913 7 C 0.156 3.844 8 C -0.331 4.331 9 C 0.592 3.408 10 O -0.589 6.589 11 N -0.704 5.704 12 C 0.157 3.843 13 H 0.054 0.946 14 C -0.157 4.157 15 C -0.072 4.072 16 C -0.118 4.118 17 C 0.144 3.856 18 N -0.623 5.623 19 C -0.248 4.248 20 H 0.044 0.956 21 C -0.042 4.042 22 N -0.963 5.963 23 Si 0.953 3.047 24 H -0.275 1.275 25 H -0.315 1.315 26 H -0.252 1.252 27 C 0.120 3.880 28 C -0.122 4.122 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.243 0.757 36 H 0.413 0.587 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.260 0.740 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.774 16.006 16.039 32.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C 0.085 3.915 4 N -0.214 5.214 5 N -0.121 5.121 6 C -0.051 4.051 7 C 0.001 3.999 8 C -0.346 4.346 9 C 0.381 3.619 10 O -0.470 6.470 11 N -0.356 5.356 12 C 0.052 3.948 13 H 0.072 0.928 14 C -0.215 4.215 15 C -0.091 4.091 16 C -0.156 4.156 17 C 0.020 3.980 18 N -0.347 5.347 19 C -0.377 4.377 20 H 0.062 0.938 21 C -0.237 4.237 22 N -0.609 5.609 23 Si 0.782 3.218 24 H -0.202 1.202 25 H -0.244 1.244 26 H -0.176 1.176 27 C -0.005 4.005 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.259 0.741 36 H 0.251 0.749 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.981 15.538 15.988 32.743 hybrid contribution 1.263 -0.569 -0.194 1.399 sum -22.718 14.969 15.793 31.458 Atomic orbital electron populations 1.23205 0.76106 1.05095 1.02260 1.86460 1.23705 1.21752 1.88431 1.20779 0.91020 0.85422 0.94283 1.77263 1.14608 0.94795 1.34720 1.48176 1.02810 1.07654 1.53467 1.22512 1.06348 0.70644 1.05611 1.23728 0.92839 0.90507 0.92802 1.19773 0.90905 0.94115 1.29829 1.17372 0.82376 0.87162 0.74948 1.90777 1.83059 1.20486 1.52630 1.45626 1.04024 1.10655 1.75314 1.20796 0.86524 0.90624 0.96814 0.92800 1.22157 1.01361 1.02483 0.95533 1.21220 0.92914 0.98808 0.96173 1.21931 0.97743 1.00452 0.95518 1.21127 0.86923 0.90954 0.99034 1.44513 1.37906 1.48270 1.04059 1.18859 0.93215 1.37809 0.87855 0.93777 1.25988 0.97780 0.99302 1.00579 1.69997 1.14634 1.38241 1.38060 0.85803 0.76366 0.79789 0.79836 1.20169 1.24414 1.17610 1.21424 0.96653 0.96213 0.86190 1.21996 0.95243 0.97915 1.00977 0.92212 0.86357 0.91949 0.88700 0.88720 0.84967 0.74083 0.74944 0.94027 0.91038 0.90297 0.88227 0.94891 0.89184 0.93402 0.93483 0.93105 0.93880 0.93843 0.89397 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.70 113.37 1.21 1.74 16 2 O -0.30 -8.70 9.99 -86.79 -0.87 -9.56 16 3 C 0.29 7.66 7.84 85.70 0.67 8.33 16 4 N -0.37 -8.05 11.90 -170.00 -2.02 -10.08 16 5 N -0.34 -4.27 3.97 -367.79 -1.46 -5.73 16 6 C 0.09 0.15 11.44 127.77 1.46 1.61 16 7 C 0.16 1.77 10.98 84.31 0.93 2.70 16 8 C -0.33 -7.52 6.14 -20.08 -0.12 -7.65 16 9 C 0.59 16.31 7.77 86.61 0.67 16.99 16 10 O -0.59 -22.51 16.09 1.02 0.02 -22.49 16 11 N -0.70 -14.22 4.35 -445.98 -1.94 -16.16 16 12 C 0.16 3.85 2.16 44.99 0.10 3.95 16 13 H 0.05 1.73 7.58 -2.39 -0.02 1.71 16 14 C -0.16 -3.44 9.13 71.98 0.66 -2.79 16 15 C -0.07 -1.81 1.79 -10.76 -0.02 -1.82 16 16 C -0.12 -3.35 5.22 30.67 0.16 -3.19 16 17 C 0.14 5.11 6.52 86.36 0.56 5.68 16 18 N -0.62 -28.53 2.77 -699.08 -1.94 -30.46 16 19 C -0.25 -14.18 10.04 84.03 0.84 -13.33 16 20 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 21 C -0.04 -2.51 5.23 84.86 0.44 -2.06 16 22 N -0.96 -61.65 13.97 21.65 0.30 -61.35 16 23 Si 0.95 46.21 24.34 68.60 1.67 47.88 16 24 H -0.27 -12.59 6.62 99.48 0.66 -11.94 16 25 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 26 H -0.25 -11.29 6.64 99.48 0.66 -10.63 16 27 C 0.12 4.82 4.20 86.36 0.36 5.18 16 28 C -0.12 -3.87 5.04 30.67 0.15 -3.71 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 33 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.24 -0.13 7.46 -2.91 -0.02 -0.15 16 36 H 0.41 4.77 7.30 -92.70 -0.68 4.10 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.54 6.40 -2.38 -0.02 1.52 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.91 7.40 -2.39 -0.02 1.89 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.77 7.93 -2.38 -0.02 1.75 16 45 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 46 H 0.04 1.59 7.07 -2.39 -0.02 1.57 16 47 H 0.04 2.00 4.50 -2.38 -0.01 1.99 16 48 H 0.09 2.30 6.36 -2.39 -0.02 2.28 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -89.77 388.02 2.03 -87.74 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.19 Total: 8.60 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 8.08 Total: 11.62 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -7.06 Total: -123.78 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.85 Total: -32.06 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -89.77 2.03 -87.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997255899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.240 kcal (2) G-P(sol) polarization free energy of solvation -89.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds