Wall clock time and date at job start Tue Mar 31 2020 19:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47083 * 2 1 4 4 N 1.46490 * 109.47390 * 120.00143 * 2 1 3 5 5 C 1.34776 * 120.00467 * 274.99929 * 4 2 1 6 6 O 1.21709 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.46654 * 120.00716 * 179.72733 * 5 4 2 8 8 C 1.35153 * 126.37339 * 359.96116 * 7 5 4 9 9 N 1.37019 * 107.87296 * 179.88206 * 8 7 5 10 10 C 1.46501 * 125.64847 * 180.12801 * 9 8 7 11 11 C 1.34618 * 108.69549 * 0.39064 * 9 8 7 12 12 O 1.21734 * 125.72151 * 179.76306 * 11 9 8 13 13 N 1.34754 * 108.54799 * 359.76327 * 11 9 8 14 14 C 1.46504 * 126.17864 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46916 * 240.00455 * 2 1 3 16 16 C 1.53033 * 109.46111 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.31272 * 178.61115 * 16 15 2 18 18 N 1.46926 * 108.77795 * 54.63390 * 17 16 15 19 19 C 1.36944 * 120.62916 * 126.41031 * 18 17 16 20 20 H 1.07997 * 119.99731 * 207.66395 * 19 18 17 21 21 C 1.38803 * 120.00023 * 27.66187 * 19 18 17 22 22 N 1.31623 * 119.99969 * 17.37642 * 21 19 18 23 23 Si 1.86798 * 119.99960 * 197.37614 * 21 19 18 24 24 H 1.48502 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47253 * 120.00315 * 23 21 19 26 26 H 1.48501 * 109.47226 * 239.99955 * 23 21 19 27 27 C 1.46927 * 118.73813 * 306.39619 * 18 17 16 28 28 C 1.53044 * 109.46292 * 59.99417 * 15 2 1 29 29 H 1.09005 * 109.47013 * 299.99498 * 1 2 3 30 30 H 1.08996 * 109.47518 * 59.99538 * 1 2 3 31 31 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00483 * 95.00173 * 4 2 1 33 33 H 1.07997 * 126.06265 * 0.02562 * 8 7 5 34 34 H 1.08999 * 109.46959 * 180.27433 * 10 9 8 35 35 H 1.08993 * 109.47294 * 300.28547 * 10 9 8 36 36 H 1.09010 * 109.46953 * 60.28078 * 10 9 8 37 37 H 1.09000 * 109.46927 * 269.97065 * 14 13 11 38 38 H 1.08999 * 109.47620 * 29.97236 * 14 13 11 39 39 H 1.08996 * 109.46949 * 149.97567 * 14 13 11 40 40 H 1.09002 * 109.45773 * 300.02632 * 15 2 1 41 41 H 1.09001 * 109.49892 * 298.56235 * 16 15 2 42 42 H 1.09003 * 109.50079 * 58.66208 * 16 15 2 43 43 H 1.08998 * 109.58685 * 294.84435 * 17 16 15 44 44 H 1.09003 * 109.58800 * 174.42162 * 17 16 15 45 45 H 0.97004 * 119.99607 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58424 * 293.81375 * 27 18 17 47 47 H 1.09000 * 109.58540 * 173.39520 * 27 18 17 48 48 H 1.09000 * 109.49692 * 301.34198 * 28 15 2 49 49 H 1.08995 * 109.49564 * 61.43506 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1472 -0.0183 2.3571 6 8 1.8573 1.1624 2.4119 7 6 2.6304 -0.7111 3.5560 8 6 2.9808 -2.0135 3.6426 9 7 3.3770 -2.2576 4.9314 10 6 3.8397 -3.5461 5.4529 11 6 3.2651 -1.1186 5.6402 12 8 3.5317 -0.9871 6.8207 13 7 2.8086 -0.1487 4.8237 14 6 2.5468 1.2437 5.1968 15 6 2.0400 -0.7212 -1.2493 16 6 3.5703 -0.7216 -1.2488 17 6 4.0771 -1.4745 -2.4830 18 7 3.4743 -0.8768 -3.6822 19 6 4.2600 -0.4512 -4.7199 20 1 3.9210 0.3490 -5.3610 21 6 5.4922 -1.0483 -4.9476 22 7 5.7651 -2.2194 -4.4123 23 14 6.7632 -0.1899 -6.0139 24 1 6.2147 1.1042 -6.4932 25 1 7.9920 0.0573 -5.2175 26 1 7.0933 -1.0490 -7.1794 27 6 2.0124 -0.7448 -3.7470 28 6 1.5296 0.0005 -2.4987 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6317 1.1525 33 1 2.9554 -2.7336 2.8381 34 1 4.0827 -3.4438 6.5105 35 1 3.0533 -4.2909 5.3310 36 1 4.7275 -3.8621 4.9050 37 1 1.5153 1.3414 5.5351 38 1 3.2221 1.5377 6.0003 39 1 2.7083 1.8879 4.3325 40 1 1.6761 -1.7487 -1.2494 41 1 3.9344 0.3055 -1.2742 42 1 3.9337 -1.2148 -0.3472 43 1 3.7905 -2.5238 -2.4141 44 1 5.1626 -1.3931 -2.5404 45 1 6.6261 -2.6368 -4.5718 46 1 1.5573 -1.7346 -3.7813 47 1 1.7355 -0.1820 -4.6385 48 1 0.4398 0.0215 -2.4870 49 1 1.9135 1.0205 -2.5120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997437292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:38 Heat of formation + Delta-G solvation = 1.286940 kcal Electronic energy + Delta-G solvation = -29901.865880 eV Core-core repulsion = 25865.875135 eV Total energy + Delta-G solvation = -4035.990745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.69303 -39.88443 -38.01017 -37.00339 -35.80020 -35.21068 -33.12087 -31.55402 -30.42931 -30.27753 -28.99951 -27.97934 -26.36800 -25.46270 -24.00183 -22.81702 -22.02009 -21.14328 -20.58752 -20.46590 -19.22242 -18.16049 -17.03664 -16.95990 -16.63104 -16.17693 -15.57448 -15.24950 -15.00330 -14.81614 -14.55875 -14.29864 -14.17866 -13.79274 -13.55147 -13.42681 -13.37005 -13.17306 -12.98889 -12.87518 -12.47761 -12.42971 -12.27338 -11.79228 -11.70601 -11.53459 -11.25549 -11.00238 -10.82211 -10.71453 -10.46712 -10.27377 -10.22331 -10.20232 -10.05970 -9.91398 -9.56888 -9.51296 -9.08102 -8.49298 -8.06651 -6.69569 -5.81645 -3.23055 1.08885 1.88630 2.58288 2.66716 3.09810 3.35382 3.39729 3.43868 3.45843 4.33166 4.47978 4.65167 4.67713 4.79178 4.88977 4.91345 5.01224 5.15588 5.20050 5.24179 5.26879 5.35765 5.45930 5.52176 5.58041 5.66691 5.71396 5.77015 5.92412 6.03849 6.04411 6.07618 6.22846 6.27210 6.34324 6.39419 6.52221 6.57305 6.64749 6.73508 6.79830 6.91698 6.95707 7.32893 7.39876 7.61882 7.77956 7.94095 8.07108 8.42831 9.19444 9.83119 10.39069 11.26789 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.002675 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.749391 B =10465.180731 C =11366.226337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.089 0.911 4 N -0.706 5.706 5 C 0.592 3.408 6 O -0.538 6.538 7 C -0.033 4.033 8 C 0.054 3.946 9 N -0.524 5.524 10 C 0.091 3.909 11 C 0.648 3.352 12 O -0.569 6.569 13 N -0.510 5.510 14 C 0.100 3.900 15 C -0.084 4.084 16 C -0.134 4.134 17 C 0.171 3.829 18 N -0.593 5.593 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.146 3.854 28 C -0.126 4.126 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.400 0.600 33 H 0.192 0.808 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.086 0.914 45 H 0.252 0.748 46 H 0.017 0.983 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 -1.953 16.306 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.107 0.893 4 N -0.356 5.356 5 C 0.378 3.622 6 O -0.416 6.416 7 C -0.142 4.142 8 C -0.076 4.076 9 N -0.240 5.240 10 C -0.050 4.050 11 C 0.350 3.650 12 O -0.446 6.446 13 N -0.230 5.230 14 C -0.041 4.041 15 C -0.104 4.104 16 C -0.173 4.173 17 C 0.045 3.955 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.019 3.981 28 C -0.165 4.165 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.209 0.791 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.645 -1.058 17.219 19.297 hybrid contribution 0.857 -0.246 -0.594 1.072 sum -7.787 -1.304 16.625 18.405 Atomic orbital electron populations 1.22217 0.95422 1.02027 1.02423 1.21216 0.93633 0.97686 0.83076 0.89311 1.45801 1.66677 1.14029 1.09137 1.16683 0.77751 0.86056 0.81706 1.90809 1.50832 1.15141 1.84826 1.19762 1.13704 0.92315 0.88389 1.22081 1.01577 0.95565 0.88332 1.44935 1.58291 1.11240 1.09581 1.21903 1.00541 0.80809 1.01727 1.16141 0.82963 0.80608 0.85251 1.91034 1.59884 1.81981 1.11744 1.45181 1.58948 1.11093 1.07737 1.21883 1.01939 0.77328 1.02908 1.21347 0.97282 0.99069 0.92655 1.22233 0.93518 1.01709 0.99880 1.20764 0.99480 0.92609 0.82606 1.44070 0.99543 1.72016 1.15915 1.19232 0.99103 1.12080 1.07549 0.91683 1.25015 1.00037 0.95347 0.99318 1.70041 1.22634 1.14097 1.48034 0.86254 0.81771 0.79147 0.79800 1.20260 1.21585 1.21774 1.20893 0.86081 0.96414 0.94702 1.22082 0.98761 1.00047 0.95645 0.92620 0.90974 0.92563 0.76534 0.79114 0.88749 0.90287 0.90126 0.91423 0.90079 0.88125 0.91363 0.92625 0.93510 0.96603 0.89553 0.93763 0.96548 0.92804 0.92613 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.13 37.16 0.34 -1.41 16 2 C 0.15 1.79 2.16 -67.93 -0.15 1.64 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -7.41 4.35 -55.13 -0.24 -7.65 16 5 C 0.59 7.23 7.75 -12.86 -0.10 7.13 16 6 O -0.54 -8.17 14.49 5.18 0.08 -8.10 16 7 C -0.03 -0.36 6.88 -81.91 -0.56 -0.92 16 8 C 0.05 0.45 10.91 -16.33 -0.18 0.27 16 9 N -0.52 -5.03 3.12 -128.78 -0.40 -5.43 16 10 C 0.09 0.54 11.16 59.85 0.67 1.21 16 11 C 0.65 8.58 8.49 -87.08 -0.74 7.84 16 12 O -0.57 -9.23 17.35 5.16 0.09 -9.14 16 13 N -0.51 -6.34 3.21 -124.83 -0.40 -6.74 16 14 C 0.10 1.10 10.57 59.85 0.63 1.73 16 15 C -0.08 -1.18 1.79 -90.58 -0.16 -1.34 16 16 C -0.13 -2.26 5.22 -26.61 -0.14 -2.40 16 17 C 0.17 3.78 5.31 -3.71 -0.02 3.76 16 18 N -0.59 -14.07 2.99 -172.32 -0.52 -14.59 16 19 C -0.25 -6.66 9.59 -15.06 -0.14 -6.80 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -25.43 11.19 55.49 0.62 -24.80 16 23 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16 28 C -0.13 -1.93 5.04 -26.61 -0.13 -2.06 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.40 3.21 7.23 -40.82 -0.30 2.91 16 33 H 0.19 0.80 7.37 -52.49 -0.39 0.42 16 34 H 0.09 0.64 7.68 -51.93 -0.40 0.24 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.10 1.15 6.45 -51.93 -0.33 0.81 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.68 7.41 -51.93 -0.38 0.30 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 2.20 6.04 -51.93 -0.31 1.89 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 48 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -34.46 389.18 -8.51 -42.98 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.78 Total: -0.04 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.80 Total: 11.38 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.94 Total: -59.23 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.16 Total: -17.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.46 -8.51 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997437292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.262 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds