Wall clock time and date at job start Tue Mar 31 2020 19:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47083 * 2 1 4 4 N 1.46490 * 109.47390 * 120.00143 * 2 1 3 5 5 C 1.34776 * 120.00467 * 274.99929 * 4 2 1 6 6 O 1.21709 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.46654 * 120.00716 * 179.72733 * 5 4 2 8 8 C 1.35153 * 126.37339 * 359.96116 * 7 5 4 9 9 N 1.37019 * 107.87296 * 179.88206 * 8 7 5 10 10 C 1.46501 * 125.64847 * 180.12801 * 9 8 7 11 11 C 1.34618 * 108.69549 * 0.39064 * 9 8 7 12 12 O 1.21734 * 125.72151 * 179.76306 * 11 9 8 13 13 N 1.34754 * 108.54799 * 359.76327 * 11 9 8 14 14 C 1.46504 * 126.17864 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46916 * 240.00455 * 2 1 3 16 16 C 1.53033 * 109.46111 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.31272 * 178.61115 * 16 15 2 18 18 N 1.46926 * 108.77795 * 54.63390 * 17 16 15 19 19 C 1.36944 * 120.62916 * 126.41031 * 18 17 16 20 20 H 1.07997 * 119.99731 * 207.66395 * 19 18 17 21 21 C 1.38803 * 120.00023 * 27.66187 * 19 18 17 22 22 N 1.31623 * 119.99969 * 17.37642 * 21 19 18 23 23 Si 1.86798 * 119.99960 * 197.37614 * 21 19 18 24 24 H 1.48502 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47253 * 120.00315 * 23 21 19 26 26 H 1.48501 * 109.47226 * 239.99955 * 23 21 19 27 27 C 1.46927 * 118.73813 * 306.39619 * 18 17 16 28 28 C 1.53044 * 109.46292 * 59.99417 * 15 2 1 29 29 H 1.09005 * 109.47013 * 299.99498 * 1 2 3 30 30 H 1.08996 * 109.47518 * 59.99538 * 1 2 3 31 31 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00483 * 95.00173 * 4 2 1 33 33 H 1.07997 * 126.06265 * 0.02562 * 8 7 5 34 34 H 1.08999 * 109.46959 * 180.27433 * 10 9 8 35 35 H 1.08993 * 109.47294 * 300.28547 * 10 9 8 36 36 H 1.09010 * 109.46953 * 60.28078 * 10 9 8 37 37 H 1.09000 * 109.46927 * 269.97065 * 14 13 11 38 38 H 1.08999 * 109.47620 * 29.97236 * 14 13 11 39 39 H 1.08996 * 109.46949 * 149.97567 * 14 13 11 40 40 H 1.09002 * 109.45773 * 300.02632 * 15 2 1 41 41 H 1.09001 * 109.49892 * 298.56235 * 16 15 2 42 42 H 1.09003 * 109.50079 * 58.66208 * 16 15 2 43 43 H 1.08998 * 109.58685 * 294.84435 * 17 16 15 44 44 H 1.09003 * 109.58800 * 174.42162 * 17 16 15 45 45 H 0.97004 * 119.99607 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58424 * 293.81375 * 27 18 17 47 47 H 1.09000 * 109.58540 * 173.39520 * 27 18 17 48 48 H 1.09000 * 109.49692 * 301.34198 * 28 15 2 49 49 H 1.08995 * 109.49564 * 61.43506 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1472 -0.0183 2.3571 6 8 1.8573 1.1624 2.4119 7 6 2.6304 -0.7111 3.5560 8 6 2.9808 -2.0135 3.6426 9 7 3.3770 -2.2576 4.9314 10 6 3.8397 -3.5461 5.4529 11 6 3.2651 -1.1186 5.6402 12 8 3.5317 -0.9871 6.8207 13 7 2.8086 -0.1487 4.8237 14 6 2.5468 1.2437 5.1968 15 6 2.0400 -0.7212 -1.2493 16 6 3.5703 -0.7216 -1.2488 17 6 4.0771 -1.4745 -2.4830 18 7 3.4743 -0.8768 -3.6822 19 6 4.2600 -0.4512 -4.7199 20 1 3.9210 0.3490 -5.3610 21 6 5.4922 -1.0483 -4.9476 22 7 5.7651 -2.2194 -4.4123 23 14 6.7632 -0.1899 -6.0139 24 1 6.2147 1.1042 -6.4932 25 1 7.9920 0.0573 -5.2175 26 1 7.0933 -1.0490 -7.1794 27 6 2.0124 -0.7448 -3.7470 28 6 1.5296 0.0005 -2.4987 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6317 1.1525 33 1 2.9554 -2.7336 2.8381 34 1 4.0827 -3.4438 6.5105 35 1 3.0533 -4.2909 5.3310 36 1 4.7275 -3.8621 4.9050 37 1 1.5153 1.3414 5.5351 38 1 3.2221 1.5377 6.0003 39 1 2.7083 1.8879 4.3325 40 1 1.6761 -1.7487 -1.2494 41 1 3.9344 0.3055 -1.2742 42 1 3.9337 -1.2148 -0.3472 43 1 3.7905 -2.5238 -2.4141 44 1 5.1626 -1.3931 -2.5404 45 1 6.6261 -2.6368 -4.5718 46 1 1.5573 -1.7346 -3.7813 47 1 1.7355 -0.1820 -4.6385 48 1 0.4398 0.0215 -2.4870 49 1 1.9135 1.0205 -2.5120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997437292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:37 Heat of formation + Delta-G solvation = -20.977275 kcal Electronic energy + Delta-G solvation = -29902.831329 eV Core-core repulsion = 25865.875135 eV Total energy + Delta-G solvation = -4036.956193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.53326 -40.88632 -39.32631 -38.01597 -36.90957 -36.24727 -34.57630 -32.92503 -31.76621 -31.41959 -30.24874 -28.82937 -27.14969 -27.05183 -25.09813 -24.03745 -23.50465 -22.23485 -21.55777 -21.46101 -20.63444 -19.10369 -18.58811 -17.88507 -17.67707 -17.15757 -16.80500 -16.40268 -16.15468 -15.83823 -15.73070 -15.38717 -15.23302 -15.00332 -14.81949 -14.71040 -14.66785 -14.22837 -14.00553 -13.92397 -13.51585 -13.41178 -13.26794 -13.14736 -13.01419 -12.73449 -12.61417 -12.52269 -12.34403 -12.11187 -11.91474 -11.83369 -11.74113 -11.39640 -11.21820 -11.04490 -10.96522 -10.89500 -10.49368 -10.07226 -8.91250 -8.61200 -7.84157 -5.27065 0.31877 1.10189 1.45758 1.49044 1.58089 1.64168 1.84970 2.21836 2.53291 2.59749 3.29952 3.57706 3.75816 3.81225 3.95949 4.00677 4.06095 4.11915 4.18468 4.32186 4.39148 4.50671 4.54320 4.56317 4.63311 4.68384 4.68985 4.80857 4.82286 4.89324 4.93712 5.00338 5.07764 5.13403 5.19169 5.24560 5.29478 5.37691 5.47441 5.51689 5.53917 5.60365 5.64102 5.72980 5.87781 6.09970 6.44168 6.56347 7.02870 7.20445 7.20791 7.94274 8.42838 9.21313 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.002675 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.749391 B =10465.180731 C =11366.226337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.065 0.935 4 N -0.695 5.695 5 C 0.596 3.404 6 O -0.575 6.575 7 C -0.070 4.070 8 C 0.093 3.907 9 N -0.518 5.518 10 C 0.083 3.917 11 C 0.630 3.370 12 O -0.610 6.610 13 N -0.518 5.518 14 C 0.101 3.899 15 C -0.073 4.073 16 C -0.120 4.120 17 C 0.177 3.823 18 N -0.613 5.613 19 C -0.258 4.258 20 H 0.061 0.939 21 C -0.049 4.049 22 N -0.931 5.931 23 Si 0.958 3.042 24 H -0.270 1.270 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.140 3.860 28 C -0.116 4.116 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.240 0.760 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.005 0.995 44 H 0.046 0.954 45 H 0.248 0.752 46 H 0.021 0.979 47 H 0.048 0.952 48 H 0.091 0.909 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 -3.333 16.423 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.083 0.917 4 N -0.346 5.346 5 C 0.383 3.617 6 O -0.456 6.456 7 C -0.177 4.177 8 C -0.037 4.037 9 N -0.233 5.233 10 C -0.056 4.056 11 C 0.332 3.668 12 O -0.492 6.492 13 N -0.237 5.237 14 C -0.040 4.040 15 C -0.092 4.092 16 C -0.159 4.159 17 C 0.051 3.949 18 N -0.337 5.337 19 C -0.389 4.389 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.195 1.195 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.015 3.985 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.253 0.747 33 H 0.257 0.743 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.039 0.961 47 H 0.066 0.934 48 H 0.109 0.891 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.927 -2.473 17.313 20.110 hybrid contribution 1.228 0.121 -0.658 1.399 sum -8.699 -2.352 16.655 18.936 Atomic orbital electron populations 1.22158 0.93754 1.03199 1.02327 1.20928 0.94726 0.96235 0.82630 0.91654 1.45602 1.66241 1.14621 1.08125 1.16777 0.77122 0.85582 0.82203 1.90795 1.52589 1.16815 1.85393 1.19721 1.16865 0.93490 0.87643 1.22832 0.97450 0.95096 0.88355 1.45203 1.56952 1.11330 1.09773 1.22247 1.02583 0.79541 1.01269 1.16401 0.83548 0.81708 0.85112 1.90987 1.61803 1.82876 1.13535 1.45293 1.58695 1.11298 1.08432 1.21860 1.02365 0.77202 1.02564 1.21213 0.94807 1.00164 0.92972 1.22019 0.95813 0.99765 0.98294 1.20599 0.97266 0.92682 0.84331 1.44362 1.01353 1.72128 1.15858 1.19505 0.99784 1.11691 1.07919 0.92114 1.25665 1.01706 0.96041 1.01072 1.70165 1.22712 1.15261 1.49581 0.85341 0.79415 0.78362 0.78152 1.19480 1.21867 1.21935 1.21075 0.83672 0.97071 0.96708 1.21958 1.00784 0.98656 0.94128 0.93428 0.90430 0.90690 0.74708 0.74342 0.90115 0.87320 0.87813 0.90792 0.90015 0.88869 0.89526 0.94678 0.90821 0.97715 0.93568 0.94234 0.96093 0.93387 0.89104 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.13 71.98 0.66 -2.16 16 2 C 0.16 3.42 2.16 44.99 0.10 3.52 16 3 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 4 N -0.69 -12.37 4.35 -446.53 -1.94 -14.31 16 5 C 0.60 13.44 7.75 86.44 0.67 14.11 16 6 O -0.58 -17.18 14.49 -4.38 -0.06 -17.25 16 7 C -0.07 -1.39 6.88 39.35 0.27 -1.12 16 8 C 0.09 1.18 10.91 83.17 0.91 2.08 16 9 N -0.52 -8.58 3.12 -679.64 -2.12 -10.70 16 10 C 0.08 0.72 11.16 127.77 1.43 2.15 16 11 C 0.63 16.26 8.49 179.11 1.52 17.78 16 12 O -0.61 -20.12 17.35 -4.46 -0.08 -20.20 16 13 N -0.52 -12.61 3.21 -667.05 -2.14 -14.75 16 14 C 0.10 2.27 10.57 127.77 1.35 3.62 16 15 C -0.07 -1.81 1.79 -10.77 -0.02 -1.83 16 16 C -0.12 -3.85 5.22 30.67 0.16 -3.69 16 17 C 0.18 7.78 5.31 86.36 0.46 8.24 16 18 N -0.61 -29.10 2.99 -699.10 -2.09 -31.19 16 19 C -0.26 -13.91 9.59 84.03 0.81 -13.10 16 20 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 21 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 22 N -0.93 -53.31 11.19 21.65 0.24 -53.07 16 23 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 C 0.14 5.25 6.52 86.36 0.56 5.81 16 28 C -0.12 -3.27 5.04 30.67 0.15 -3.12 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.08 1.32 6.40 -2.39 -0.02 1.31 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 4.71 7.23 -92.71 -0.67 4.04 16 33 H 0.24 0.51 7.37 -2.91 -0.02 0.49 16 34 H 0.08 0.98 7.68 -2.39 -0.02 0.96 16 35 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 39 H 0.09 2.22 6.45 -2.39 -0.02 2.20 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.95 7.41 -2.39 -0.02 1.93 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.05 2.40 6.04 -2.39 -0.01 2.38 16 45 H 0.25 13.81 8.31 -92.71 -0.77 13.03 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 48 H 0.09 1.97 6.36 -2.39 -0.02 1.95 16 49 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -78.85 389.18 3.56 -75.29 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.29 Total: 9.78 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: 9.44 Total: 30.01 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -8.06 Total: -124.03 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.14 Total: -37.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -78.85 3.56 -75.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997437292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.316 kcal (2) G-P(sol) polarization free energy of solvation -78.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds