Wall clock time and date at job start Tue Mar 31 2020 19:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35773 * 117.00424 * 2 1 4 4 C 1.35589 * 126.08367 * 177.76743 * 3 2 1 5 5 C 1.41057 * 107.79691 * 180.14787 * 4 3 2 6 6 C 1.47721 * 125.98528 * 179.86761 * 5 4 3 7 7 O 1.21575 * 119.99587 * 359.71332 * 6 5 4 8 8 N 1.34778 * 120.00363 * 179.71824 * 6 5 4 9 9 C 1.46499 * 119.99741 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47677 * 324.99715 * 9 8 6 11 11 C 1.53000 * 109.47031 * 85.00036 * 9 8 6 12 12 C 1.53001 * 109.46810 * 204.99796 * 9 8 6 13 13 C 1.53042 * 109.45891 * 180.02562 * 12 9 8 14 14 C 1.53196 * 109.31303 * 181.37241 * 13 12 9 15 15 N 1.46933 * 108.77599 * 305.36535 * 14 13 12 16 16 C 1.36932 * 120.62857 * 233.58593 * 15 14 13 17 17 H 1.08001 * 120.00421 * 37.60493 * 16 15 14 18 18 C 1.38814 * 119.99634 * 217.60259 * 16 15 14 19 19 N 1.31609 * 120.00145 * 21.12213 * 18 16 15 20 20 Si 1.86802 * 119.99663 * 200.84220 * 18 16 15 21 21 H 1.48497 * 109.47604 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47009 * 120.00514 * 20 18 16 23 23 H 1.48497 * 109.47070 * 239.99928 * 20 18 16 24 24 C 1.46927 * 118.73548 * 53.85709 * 15 14 13 25 25 C 1.53041 * 109.44978 * 300.06123 * 12 9 8 26 26 N 1.31871 * 108.03910 * 359.60569 * 5 4 3 27 27 N 1.35841 * 126.08325 * 357.48123 * 3 2 1 28 28 C 1.46499 * 125.94620 * 359.97438 * 27 3 2 29 29 H 1.08997 * 109.47647 * 172.66255 * 1 2 3 30 30 H 1.09007 * 109.46563 * 292.66359 * 1 2 3 31 31 H 1.08993 * 109.47204 * 52.65637 * 1 2 3 32 32 H 1.08003 * 126.10566 * 0.03551 * 4 3 2 33 33 H 0.96995 * 119.99736 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47136 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47150 * 299.99568 * 11 9 8 36 36 H 1.09002 * 109.47329 * 59.99805 * 11 9 8 37 37 H 1.08999 * 109.46129 * 60.02801 * 12 9 8 38 38 H 1.08994 * 109.49988 * 61.42175 * 13 12 9 39 39 H 1.09000 * 109.49779 * 301.32066 * 13 12 9 40 40 H 1.08995 * 109.58815 * 185.57453 * 14 13 12 41 41 H 1.08999 * 109.70338 * 65.22177 * 14 13 12 42 42 H 0.97002 * 120.00304 * 5.41674 * 19 18 16 43 43 H 1.08997 * 109.58597 * 65.93409 * 24 15 14 44 44 H 1.09006 * 109.58120 * 186.35218 * 24 15 14 45 45 H 1.08997 * 109.49895 * 298.57655 * 25 12 9 46 46 H 1.09004 * 109.49524 * 58.67490 * 25 12 9 47 47 H 1.08996 * 109.47278 * 274.42956 * 28 27 3 48 48 H 1.09005 * 109.47586 * 34.43463 * 28 27 3 49 49 H 1.09004 * 109.47230 * 154.43341 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3836 1.4240 0.0427 5 6 3.5976 2.8182 0.0289 6 6 4.9099 3.4954 0.0665 7 8 5.9315 2.8384 0.1193 8 7 4.9747 4.8414 0.0422 9 6 6.2762 5.5128 0.0800 10 1 6.9609 4.9431 0.7083 11 6 6.8432 5.6062 -1.3379 12 6 6.1074 6.9203 0.6556 13 6 7.4670 7.6218 0.6944 14 6 7.2998 9.0177 1.3028 15 7 6.2683 9.7422 0.5477 16 6 6.5300 10.9776 0.0180 17 1 7.5025 11.1908 -0.4006 18 6 5.5452 11.9559 0.0191 19 7 4.5380 11.8748 0.8623 20 14 5.6538 13.3916 -1.1710 21 1 6.8761 13.2537 -2.0030 22 1 4.4561 13.3985 -2.0489 23 1 5.7151 14.6638 -0.4075 24 6 4.9490 9.1186 0.3770 25 6 5.1449 7.7193 -0.2261 26 7 2.4212 3.4113 -0.0291 27 7 1.4315 2.4205 -0.0482 28 6 -0.0141 2.6499 -0.1100 29 1 -0.3634 -1.0192 -0.1312 30 1 -0.3633 0.3960 0.9484 31 1 -0.3633 0.6233 -0.8169 32 1 4.1491 0.6632 0.0822 33 1 4.1596 5.3654 -0.0003 34 1 7.8114 6.1062 -1.3099 35 1 6.9635 4.6035 -1.7479 36 1 6.1586 6.1760 -1.9662 37 1 5.7038 6.8535 1.6659 38 1 7.8594 7.7110 -0.3185 39 1 8.1592 7.0401 1.3033 40 1 8.2443 9.5583 1.2423 41 1 6.9952 8.9300 2.3457 42 1 4.5236 11.1762 1.5351 43 1 4.4555 9.0368 1.3454 44 1 4.3420 9.7258 -0.2946 45 1 5.5595 7.8076 -1.2302 46 1 4.1838 7.2071 -0.2725 47 1 -0.3446 2.6082 -1.1478 48 1 -0.5290 1.8813 0.4665 49 1 -0.2444 3.6310 0.3054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997672657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:32 Heat of formation + Delta-G solvation = 36.216727 kcal Electronic energy + Delta-G solvation = -29513.156472 eV Core-core repulsion = 25478.680397 eV Total energy + Delta-G solvation = -4034.476075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94433 -39.89422 -38.68312 -37.94513 -35.41314 -33.86685 -33.02495 -31.17547 -30.23400 -30.08547 -28.69538 -28.29754 -26.76417 -25.31219 -24.01605 -22.87002 -22.25414 -21.80606 -20.53633 -19.98751 -18.75389 -18.45097 -17.23254 -17.13669 -16.63859 -16.20800 -15.72103 -15.38647 -15.21337 -14.74419 -14.43590 -14.38554 -14.27668 -14.09983 -13.75961 -13.53646 -13.51473 -13.33322 -13.27290 -12.71278 -12.68905 -12.13247 -11.88790 -11.78614 -11.76616 -11.47920 -11.14122 -11.08785 -10.94357 -10.65989 -10.34304 -10.22479 -10.14548 -10.07363 -9.81517 -9.64052 -9.52536 -9.17926 -8.97354 -8.74166 -8.34775 -6.77276 -5.99966 -3.31689 1.11466 1.76926 1.91543 2.43712 3.18637 3.31998 3.50876 3.53656 3.67353 3.83957 4.23677 4.31276 4.53373 4.58093 4.60302 4.70574 4.94112 4.98688 4.99465 5.14284 5.16573 5.27040 5.39235 5.50941 5.54075 5.61187 5.63814 5.70724 5.84361 6.00384 6.05395 6.07808 6.14517 6.23751 6.29657 6.40953 6.48232 6.58950 6.63550 6.67590 6.80025 6.88387 6.90276 7.01527 7.08307 7.22395 7.57675 8.13494 8.16473 8.64233 9.17569 9.86818 10.36912 11.23612 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.002406 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.104903 B =11636.284542 C =12794.614893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.267 3.733 4 C -0.234 4.234 5 C 0.059 3.941 6 C 0.599 3.401 7 O -0.528 6.528 8 N -0.705 5.705 9 C 0.146 3.854 10 H 0.086 0.914 11 C -0.163 4.163 12 C -0.085 4.085 13 C -0.125 4.125 14 C 0.146 3.854 15 N -0.597 5.597 16 C -0.349 4.349 17 H 0.050 0.950 18 C -0.021 4.021 19 N -0.916 5.916 20 Si 1.071 2.929 21 H -0.291 1.291 22 H -0.290 1.290 23 H -0.293 1.293 24 C 0.156 3.844 25 C -0.132 4.132 26 N -0.246 5.246 27 N -0.392 5.392 28 C 0.073 3.927 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.014 0.986 42 H 0.269 0.731 43 H 0.016 0.984 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -23.003 -2.072 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.194 6.194 3 C 0.101 3.899 4 C -0.264 4.264 5 C -0.109 4.109 6 C 0.382 3.618 7 O -0.402 6.402 8 N -0.357 5.357 9 C 0.042 3.958 10 H 0.104 0.896 11 C -0.222 4.222 12 C -0.104 4.104 13 C -0.165 4.165 14 C 0.020 3.980 15 N -0.322 5.322 16 C -0.479 4.479 17 H 0.068 0.932 18 C -0.224 4.224 19 N -0.555 5.555 20 Si 0.901 3.099 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.220 1.220 24 C 0.030 3.970 25 C -0.171 4.171 26 N -0.077 5.077 27 N -0.189 5.189 28 C -0.067 4.067 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.389 -21.277 -2.633 23.824 hybrid contribution 0.257 -1.858 0.582 1.964 sum -10.132 -23.135 -2.052 25.340 Atomic orbital electron populations 1.23673 0.77966 1.05397 1.01543 1.86308 1.21631 1.21555 1.89897 1.19564 0.91066 0.78942 1.00341 1.20340 0.91976 0.95601 1.18519 1.21924 0.92886 0.93095 1.02971 1.16884 0.85813 0.82266 0.76863 1.90798 1.34183 1.65259 1.50009 1.46117 1.10850 1.05555 1.73141 1.21165 0.83618 0.93386 0.97633 0.89561 1.22240 1.01769 1.01775 0.96366 1.21306 0.97899 0.91836 0.99384 1.22060 0.94856 0.97911 1.01656 1.20932 0.93426 0.90599 0.93037 1.44055 1.09484 1.17435 1.61177 1.19940 1.01944 0.89113 1.36914 0.93197 1.26019 0.96133 0.99803 1.00420 1.70705 1.34133 1.34459 1.16228 0.83438 0.75332 0.75488 0.75602 1.21764 1.21701 1.22042 1.20968 0.88382 0.90482 0.97200 1.22261 0.96970 0.98188 0.99728 1.77766 0.95115 1.11030 1.23828 1.49077 1.07035 1.02923 1.59882 1.22599 0.74541 1.05801 1.03743 0.87220 0.91779 0.91624 0.81665 0.75581 0.91048 0.92712 0.91912 0.91341 0.91611 0.92867 0.92630 0.96798 0.91975 0.96595 0.91225 0.91618 0.93637 0.90208 0.88390 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.38 101.05 0.95 0.98 16 2 O -0.29 -2.46 10.57 -19.03 -0.20 -2.67 16 3 C 0.27 2.86 7.78 -16.72 -0.13 2.73 16 4 C -0.23 -2.96 10.59 -39.46 -0.42 -3.38 16 5 C 0.06 0.81 7.09 -82.91 -0.59 0.23 16 6 C 0.60 9.07 7.79 -12.39 -0.10 8.97 16 7 O -0.53 -9.23 16.56 5.30 0.09 -9.14 16 8 N -0.70 -9.99 4.99 -54.79 -0.27 -10.27 16 9 C 0.15 2.12 2.40 -67.93 -0.16 1.96 16 10 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 11 C -0.16 -2.31 8.78 37.16 0.33 -1.98 16 12 C -0.09 -1.37 2.14 -90.58 -0.19 -1.57 16 13 C -0.13 -2.13 4.96 -26.61 -0.13 -2.26 16 14 C 0.15 3.08 6.51 -3.70 -0.02 3.05 16 15 N -0.60 -14.81 2.71 -172.05 -0.47 -15.28 16 16 C -0.35 -9.73 9.41 -15.06 -0.14 -9.87 16 17 H 0.05 1.41 7.91 -52.49 -0.42 1.00 16 18 C -0.02 -0.59 4.75 -17.43 -0.08 -0.67 16 19 N -0.92 -27.46 12.76 55.49 0.71 -26.75 16 20 Si 1.07 25.34 29.97 -169.99 -5.09 20.25 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.16 3.55 4.80 -3.48 -0.02 3.53 16 25 C -0.13 -2.36 4.83 -26.39 -0.13 -2.49 16 26 N -0.25 -3.18 12.26 33.34 0.41 -2.77 16 27 N -0.39 -3.96 4.03 -68.18 -0.28 -4.23 16 28 C 0.07 0.38 9.63 59.85 0.58 0.95 16 29 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.16 6.58 -51.93 -0.34 -0.18 16 31 H 0.07 0.16 5.91 -51.93 -0.31 -0.14 16 32 H 0.17 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.41 5.54 6.54 -40.82 -0.27 5.27 16 34 H 0.07 0.98 6.46 -51.93 -0.34 0.64 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.90 6.46 -51.93 -0.34 0.57 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.14 6.51 -51.93 -0.34 0.80 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.27 8.15 6.80 -40.82 -0.28 7.87 16 43 H 0.02 0.38 7.81 -51.93 -0.41 -0.03 16 44 H 0.07 1.78 6.90 -51.93 -0.36 1.42 16 45 H 0.07 1.21 6.51 -51.93 -0.34 0.88 16 46 H 0.05 0.72 6.46 -51.93 -0.34 0.39 16 47 H 0.08 0.29 7.75 -51.93 -0.40 -0.11 16 48 H 0.10 0.24 4.44 -51.93 -0.23 0.01 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -34.33 381.49 -6.87 -41.20 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.25 Total: 3.71 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.26 Total: 0.20 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.10 Total: -59.30 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.11 Total: -11.81 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.33 -6.87 -41.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997672657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.420 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds