Wall clock time and date at job start Tue Mar 31 2020 19:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35351 * 116.99612 * 2 1 4 4 C 1.38998 * 126.40442 * 269.14879 * 3 2 1 5 5 C 1.46925 * 126.49626 * 0.02562 * 4 3 2 6 6 O 1.21664 * 119.99541 * 359.71130 * 5 4 3 7 7 N 1.34769 * 120.00010 * 179.71186 * 5 4 3 8 8 C 1.46503 * 119.99893 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46920 * 324.99443 * 8 7 5 10 10 C 1.53001 * 109.47227 * 84.99893 * 8 7 5 11 11 C 1.53008 * 109.47059 * 204.99778 * 8 7 5 12 12 C 1.53045 * 109.45980 * 300.02490 * 11 8 7 13 13 C 1.53188 * 109.31046 * 178.59802 * 12 11 8 14 14 N 1.46931 * 108.76426 * 54.65764 * 13 12 11 15 15 C 1.36938 * 120.62877 * 126.40009 * 14 13 12 16 16 H 1.08004 * 120.00217 * 329.35499 * 15 14 13 17 17 C 1.38806 * 119.99735 * 149.35924 * 15 14 13 18 18 N 1.31616 * 120.00269 * 160.65906 * 17 15 14 19 19 Si 1.86800 * 120.00075 * 340.65271 * 17 15 14 20 20 H 1.48499 * 109.47161 * 92.41085 * 19 17 15 21 21 H 1.48508 * 109.47340 * 212.40938 * 19 17 15 22 22 H 1.48496 * 109.47229 * 332.40872 * 19 17 15 23 23 C 1.46925 * 118.73756 * 306.38468 * 14 13 12 24 24 C 1.53039 * 109.45871 * 179.97438 * 11 8 7 25 25 C 1.41458 * 107.00842 * 179.74921 * 4 3 2 26 26 N 1.30319 * 108.13641 * 0.23293 * 25 4 3 27 27 N 1.34658 * 126.41149 * 89.29225 * 3 2 1 28 28 C 1.46510 * 125.73881 * 0.02562 * 27 3 2 29 29 H 1.08995 * 109.47291 * 64.41592 * 1 2 3 30 30 H 1.09003 * 109.46909 * 184.41268 * 1 2 3 31 31 H 1.09005 * 109.47673 * 304.41204 * 1 2 3 32 32 H 0.96998 * 120.00376 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.47538 * 59.99928 * 10 8 7 34 34 H 1.09004 * 109.47065 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.46905 * 299.99838 * 10 8 7 36 36 H 1.09001 * 109.45809 * 59.99652 * 11 8 7 37 37 H 1.08994 * 109.49499 * 298.56737 * 12 11 8 38 38 H 1.09004 * 109.49380 * 58.66092 * 12 11 8 39 39 H 1.08997 * 109.60189 * 294.86976 * 13 12 11 40 40 H 1.08998 * 109.69739 * 174.50452 * 13 12 11 41 41 H 0.97000 * 120.00334 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.58263 * 293.81567 * 23 14 13 43 43 H 1.09001 * 109.70078 * 173.46819 * 23 14 13 44 44 H 1.09006 * 109.49413 * 301.33309 * 24 11 8 45 45 H 1.08999 * 109.49808 * 61.43064 * 24 11 8 46 46 H 1.08004 * 125.93303 * 180.18731 * 25 4 3 47 47 H 1.08996 * 109.47402 * 266.39979 * 28 27 3 48 48 H 1.09001 * 109.46724 * 26.39863 * 28 27 3 49 49 H 1.09002 * 109.46431 * 146.39647 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4326 1.9335 -1.1186 5 6 2.2546 1.5394 -2.5228 6 8 1.7242 0.4786 -2.7942 7 7 2.6790 2.3528 -3.5100 8 6 2.5010 1.9600 -4.9101 9 1 2.6181 0.8802 -5.0022 10 6 1.1015 2.3631 -5.3789 11 6 3.5504 2.6623 -5.7742 12 6 3.3861 4.1784 -5.6441 13 6 4.4603 4.8781 -6.4828 14 7 4.3821 4.3790 -7.8626 15 6 4.2596 5.2488 -8.9131 16 1 3.7436 6.1881 -8.7793 17 6 4.7985 4.9231 -10.1501 18 7 4.3767 5.5385 -11.2344 19 14 6.1226 3.6116 -10.2760 20 1 5.4907 2.2938 -10.5394 21 1 7.0483 3.9476 -11.3877 22 1 6.8817 3.5505 -9.0012 23 6 4.4382 2.9291 -8.0936 24 6 3.3646 2.2513 -7.2366 25 6 3.0268 3.1283 -0.6490 26 7 2.9981 3.1108 0.6538 27 7 2.3943 1.9243 1.0836 28 6 2.1755 1.5317 2.4781 29 1 -0.3633 0.4438 -0.9268 30 1 -0.3633 -1.0247 0.0791 31 1 -0.3634 0.5808 0.8478 32 1 3.1016 3.1986 -3.2935 33 1 0.9844 3.4428 -5.2868 34 1 0.9689 2.0704 -6.4205 35 1 0.3539 1.8627 -4.7634 36 1 4.5473 2.3751 -5.4400 37 1 2.3984 4.4693 -6.0015 38 1 3.4951 4.4677 -4.5989 39 1 5.4455 4.6601 -6.0707 40 1 4.2902 5.9547 -6.4734 41 1 4.7531 5.3107 -12.0989 42 1 5.4218 2.5523 -7.8129 43 1 4.2528 2.7174 -9.1466 44 1 3.4584 1.1689 -7.3250 45 1 2.3770 2.5606 -7.5788 46 1 3.4342 3.9176 -1.2634 47 1 1.2350 1.9544 2.8313 48 1 2.1341 0.4447 2.5472 49 1 2.9949 1.9040 3.0930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997846697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:03 Heat of formation + Delta-G solvation = 31.694816 kcal Electronic energy + Delta-G solvation = -29874.060254 eV Core-core repulsion = 25839.388094 eV Total energy + Delta-G solvation = -4034.672160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89758 -39.67571 -38.49714 -38.04976 -35.37191 -33.86431 -32.75670 -31.40208 -30.37402 -30.20458 -29.12691 -27.70002 -27.14596 -25.46378 -23.67434 -23.10792 -22.33726 -21.46740 -20.73524 -20.21531 -18.93993 -18.50926 -17.14912 -16.82289 -16.63882 -16.25369 -15.64268 -15.18215 -15.08833 -14.85800 -14.79199 -14.43202 -14.10545 -14.01761 -13.85492 -13.46409 -13.35324 -13.19020 -13.06985 -12.91557 -12.51667 -12.33775 -12.18182 -11.83255 -11.73984 -11.64877 -11.62133 -10.99749 -10.65831 -10.62439 -10.55794 -10.40029 -10.09017 -9.91229 -9.85830 -9.72717 -9.55843 -9.44002 -9.10797 -8.83053 -8.57254 -6.89347 -5.93129 -3.31275 0.89276 1.71437 1.83575 3.07155 3.27409 3.35062 3.43001 3.50525 3.54178 4.02165 4.55686 4.55867 4.61395 4.64060 4.74435 4.88765 4.89474 4.92723 4.97952 5.04585 5.10511 5.21192 5.25046 5.35358 5.44895 5.59247 5.62527 5.68389 5.80350 5.91612 5.98018 5.98693 6.09410 6.16038 6.19456 6.29503 6.40882 6.52021 6.54004 6.61791 6.69079 6.73408 6.75887 6.94411 7.03821 7.10070 7.61563 8.02522 8.33378 8.36569 8.98069 9.74840 10.14759 11.23015 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002415 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.682486 B =11592.546206 C =12045.904402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.298 6.298 3 C 0.320 3.680 4 C -0.296 4.296 5 C 0.594 3.406 6 O -0.543 6.543 7 N -0.718 5.718 8 C 0.149 3.851 9 H 0.085 0.915 10 C -0.163 4.163 11 C -0.087 4.087 12 C -0.131 4.131 13 C 0.148 3.852 14 N -0.605 5.605 15 C -0.259 4.259 16 H 0.083 0.917 17 C 0.024 3.976 18 N -0.910 5.910 19 Si 0.883 3.117 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.127 3.873 24 C -0.127 4.127 25 C 0.092 3.908 26 N -0.278 5.278 27 N -0.371 5.371 28 C 0.093 3.907 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.397 0.603 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.020 0.980 40 H 0.062 0.938 41 H 0.262 0.738 42 H 0.023 0.977 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.196 0.804 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -8.782 27.178 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.207 6.207 3 C 0.146 3.854 4 C -0.312 4.312 5 C 0.381 3.619 6 O -0.422 6.422 7 N -0.370 5.370 8 C 0.046 3.954 9 H 0.103 0.897 10 C -0.221 4.221 11 C -0.106 4.106 12 C -0.170 4.170 13 C 0.022 3.978 14 N -0.329 5.329 15 C -0.387 4.387 16 H 0.101 0.899 17 C -0.175 4.175 18 N -0.553 5.553 19 Si 0.714 3.286 20 H -0.215 1.215 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.002 3.998 24 C -0.167 4.167 25 C -0.095 4.095 26 N -0.100 5.100 27 N -0.160 5.160 28 C -0.048 4.048 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.213 0.787 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.240 -9.171 27.966 30.309 hybrid contribution 0.642 -0.637 -0.675 1.129 sum -6.598 -9.808 27.291 29.741 Atomic orbital electron populations 1.23134 0.76536 1.04211 1.01544 1.85994 1.21453 1.20290 1.92922 1.19300 0.94877 0.84842 0.86353 1.20136 1.18660 0.98870 0.93512 1.16957 0.77993 0.83607 0.83370 1.90790 1.44037 1.23232 1.84109 1.45948 1.62063 1.22855 1.06095 1.21049 0.95452 0.99979 0.78967 0.89739 1.22237 0.96190 1.01913 1.01749 1.21324 0.97806 0.95924 0.95542 1.22120 1.01758 0.94541 0.98558 1.20919 0.94649 0.97233 0.84993 1.44326 1.85856 1.00609 1.02140 1.18893 1.30144 1.01703 0.88011 0.89933 1.25358 0.98527 0.97919 0.95650 1.69826 1.43102 1.44459 0.97866 0.86910 0.83485 0.81288 0.76933 1.21538 1.23204 1.19586 1.21309 0.95118 0.84725 0.98678 1.22080 1.01667 0.99024 0.93907 1.23973 0.96768 0.96848 0.91902 1.77245 1.19548 0.99833 1.13391 1.48965 1.45959 1.14453 1.06612 1.21999 1.03656 1.01892 0.77225 0.91836 0.87602 0.93597 0.76724 0.92014 0.91114 0.92924 0.91229 0.91210 0.93287 0.96189 0.91950 0.92802 0.95957 0.91029 0.92688 0.91065 0.78699 0.90288 0.88860 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 11.13 101.05 1.12 1.43 16 2 O -0.30 -3.27 9.76 -25.01 -0.24 -3.52 16 3 C 0.32 3.60 6.98 -16.03 -0.11 3.49 16 4 C -0.30 -3.50 6.15 -104.87 -0.64 -4.14 16 5 C 0.59 8.05 7.76 -12.75 -0.10 7.95 16 6 O -0.54 -9.08 16.04 -2.04 -0.03 -9.11 16 7 N -0.72 -8.52 4.99 -55.03 -0.27 -8.79 16 8 C 0.15 1.99 2.40 -67.92 -0.16 1.82 16 9 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 10 C -0.16 -2.13 8.78 37.16 0.33 -1.80 16 11 C -0.09 -1.26 2.14 -90.57 -0.19 -1.45 16 12 C -0.13 -1.91 4.81 -26.61 -0.13 -2.04 16 13 C 0.15 2.76 6.52 -3.71 -0.02 2.73 16 14 N -0.61 -14.00 2.72 -172.32 -0.47 -14.47 16 15 C -0.26 -7.15 10.01 -15.06 -0.15 -7.30 16 16 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 17 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 18 N -0.91 -27.83 13.97 55.49 0.78 -27.06 16 19 Si 0.88 22.44 24.38 -169.99 -4.14 18.29 16 20 H -0.29 -7.06 6.66 56.52 0.38 -6.69 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.27 -6.77 6.70 56.52 0.38 -6.39 16 23 C 0.13 2.72 4.21 -3.71 -0.02 2.70 16 24 C -0.13 -2.16 4.96 -26.61 -0.13 -2.29 16 25 C 0.09 0.89 11.50 -16.97 -0.20 0.70 16 26 N -0.28 -2.90 12.48 30.88 0.39 -2.52 16 27 N -0.37 -3.52 3.99 -67.66 -0.27 -3.79 16 28 C 0.09 0.46 11.41 59.85 0.68 1.15 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.40 3.83 5.79 -40.82 -0.24 3.59 16 33 H 0.06 0.79 6.46 -51.93 -0.34 0.45 16 34 H 0.07 0.94 6.46 -51.93 -0.34 0.61 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.09 6.51 -51.93 -0.34 0.75 16 38 H 0.05 0.56 6.46 -51.93 -0.34 0.22 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.02 0.48 7.05 -51.93 -0.37 0.11 16 43 H 0.07 1.69 4.84 -51.93 -0.25 1.44 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.24 6.51 -51.93 -0.34 0.91 16 46 H 0.20 1.23 7.50 -52.48 -0.39 0.84 16 47 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 0.35 8.04 -51.93 -0.42 -0.06 16 49 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -35.35 383.55 -5.87 -41.23 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.56 Total: 0.39 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 0.18 Total: 3.57 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.15 Total: -56.63 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.28 Total: -12.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.35 -5.87 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.920 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds