Wall clock time and date at job start Tue Mar 31 2020 19:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35351 * 116.99612 * 2 1 4 4 C 1.38998 * 126.40442 * 269.14879 * 3 2 1 5 5 C 1.46925 * 126.49626 * 0.02562 * 4 3 2 6 6 O 1.21664 * 119.99541 * 359.71130 * 5 4 3 7 7 N 1.34769 * 120.00010 * 179.71186 * 5 4 3 8 8 C 1.46503 * 119.99893 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46920 * 324.99443 * 8 7 5 10 10 C 1.53001 * 109.47227 * 84.99893 * 8 7 5 11 11 C 1.53008 * 109.47059 * 204.99778 * 8 7 5 12 12 C 1.53045 * 109.45980 * 300.02490 * 11 8 7 13 13 C 1.53188 * 109.31046 * 178.59802 * 12 11 8 14 14 N 1.46931 * 108.76426 * 54.65764 * 13 12 11 15 15 C 1.36938 * 120.62877 * 126.40009 * 14 13 12 16 16 H 1.08004 * 120.00217 * 329.35499 * 15 14 13 17 17 C 1.38806 * 119.99735 * 149.35924 * 15 14 13 18 18 N 1.31616 * 120.00269 * 160.65906 * 17 15 14 19 19 Si 1.86800 * 120.00075 * 340.65271 * 17 15 14 20 20 H 1.48499 * 109.47161 * 92.41085 * 19 17 15 21 21 H 1.48508 * 109.47340 * 212.40938 * 19 17 15 22 22 H 1.48496 * 109.47229 * 332.40872 * 19 17 15 23 23 C 1.46925 * 118.73756 * 306.38468 * 14 13 12 24 24 C 1.53039 * 109.45871 * 179.97438 * 11 8 7 25 25 C 1.41458 * 107.00842 * 179.74921 * 4 3 2 26 26 N 1.30319 * 108.13641 * 0.23293 * 25 4 3 27 27 N 1.34658 * 126.41149 * 89.29225 * 3 2 1 28 28 C 1.46510 * 125.73881 * 0.02562 * 27 3 2 29 29 H 1.08995 * 109.47291 * 64.41592 * 1 2 3 30 30 H 1.09003 * 109.46909 * 184.41268 * 1 2 3 31 31 H 1.09005 * 109.47673 * 304.41204 * 1 2 3 32 32 H 0.96998 * 120.00376 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.47538 * 59.99928 * 10 8 7 34 34 H 1.09004 * 109.47065 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.46905 * 299.99838 * 10 8 7 36 36 H 1.09001 * 109.45809 * 59.99652 * 11 8 7 37 37 H 1.08994 * 109.49499 * 298.56737 * 12 11 8 38 38 H 1.09004 * 109.49380 * 58.66092 * 12 11 8 39 39 H 1.08997 * 109.60189 * 294.86976 * 13 12 11 40 40 H 1.08998 * 109.69739 * 174.50452 * 13 12 11 41 41 H 0.97000 * 120.00334 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.58263 * 293.81567 * 23 14 13 43 43 H 1.09001 * 109.70078 * 173.46819 * 23 14 13 44 44 H 1.09006 * 109.49413 * 301.33309 * 24 11 8 45 45 H 1.08999 * 109.49808 * 61.43064 * 24 11 8 46 46 H 1.08004 * 125.93303 * 180.18731 * 25 4 3 47 47 H 1.08996 * 109.47402 * 266.39979 * 28 27 3 48 48 H 1.09001 * 109.46724 * 26.39863 * 28 27 3 49 49 H 1.09002 * 109.46431 * 146.39647 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4326 1.9335 -1.1186 5 6 2.2546 1.5394 -2.5228 6 8 1.7242 0.4786 -2.7942 7 7 2.6790 2.3528 -3.5100 8 6 2.5010 1.9600 -4.9101 9 1 2.6181 0.8802 -5.0022 10 6 1.1015 2.3631 -5.3789 11 6 3.5504 2.6623 -5.7742 12 6 3.3861 4.1784 -5.6441 13 6 4.4603 4.8781 -6.4828 14 7 4.3821 4.3790 -7.8626 15 6 4.2596 5.2488 -8.9131 16 1 3.7436 6.1881 -8.7793 17 6 4.7985 4.9231 -10.1501 18 7 4.3767 5.5385 -11.2344 19 14 6.1226 3.6116 -10.2760 20 1 5.4907 2.2938 -10.5394 21 1 7.0483 3.9476 -11.3877 22 1 6.8817 3.5505 -9.0012 23 6 4.4382 2.9291 -8.0936 24 6 3.3646 2.2513 -7.2366 25 6 3.0268 3.1283 -0.6490 26 7 2.9981 3.1108 0.6538 27 7 2.3943 1.9243 1.0836 28 6 2.1755 1.5317 2.4781 29 1 -0.3633 0.4438 -0.9268 30 1 -0.3633 -1.0247 0.0791 31 1 -0.3634 0.5808 0.8478 32 1 3.1016 3.1986 -3.2935 33 1 0.9844 3.4428 -5.2868 34 1 0.9689 2.0704 -6.4205 35 1 0.3539 1.8627 -4.7634 36 1 4.5473 2.3751 -5.4400 37 1 2.3984 4.4693 -6.0015 38 1 3.4951 4.4677 -4.5989 39 1 5.4455 4.6601 -6.0707 40 1 4.2902 5.9547 -6.4734 41 1 4.7531 5.3107 -12.0989 42 1 5.4218 2.5523 -7.8129 43 1 4.2528 2.7174 -9.1466 44 1 3.4584 1.1689 -7.3250 45 1 2.3770 2.5606 -7.5788 46 1 3.4342 3.9176 -1.2634 47 1 1.2350 1.9544 2.8313 48 1 2.1341 0.4447 2.5472 49 1 2.9949 1.9040 3.0930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997846697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:02 Heat of formation + Delta-G solvation = 5.649491 kcal Electronic energy + Delta-G solvation = -29875.189664 eV Core-core repulsion = 25839.388094 eV Total energy + Delta-G solvation = -4035.801570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63456 -40.78840 -39.39357 -39.20052 -36.80005 -34.64955 -34.25762 -32.98551 -31.81546 -31.16858 -30.30809 -28.37436 -27.71210 -27.05237 -25.00932 -24.47121 -23.52076 -22.47099 -21.90832 -21.19369 -20.20355 -19.39218 -18.61255 -17.95602 -17.52916 -17.34448 -16.86285 -16.41727 -15.99302 -15.79320 -15.78191 -15.60899 -15.44226 -15.13793 -15.02671 -14.72357 -14.63486 -14.42917 -13.98647 -13.80584 -13.59328 -13.55714 -13.46892 -13.19181 -12.92550 -12.88211 -12.51721 -12.40518 -12.29334 -12.14564 -11.97653 -11.66380 -11.48548 -11.34849 -11.19828 -10.98165 -10.85389 -10.64386 -10.51986 -10.09645 -9.67575 -8.81730 -8.13883 -5.46890 0.12851 1.07638 1.08088 1.32608 1.42719 1.52000 2.25491 2.36644 2.44588 2.60985 3.11025 3.38662 3.42876 3.78905 3.89942 3.93496 4.01298 4.01415 4.16218 4.31134 4.33610 4.34890 4.37074 4.43167 4.50600 4.59066 4.60893 4.62040 4.64821 4.67101 4.78572 4.84662 4.96719 5.03395 5.06139 5.08713 5.16487 5.21198 5.25803 5.33737 5.34993 5.37548 5.61978 5.71343 5.94377 6.18005 6.24066 6.38974 6.69384 6.98921 7.36547 7.68133 8.10287 9.06334 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002415 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.682486 B =11592.546206 C =12045.904402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.315 6.315 3 C 0.313 3.687 4 C -0.322 4.322 5 C 0.594 3.406 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.161 3.839 9 H 0.073 0.927 10 C -0.158 4.158 11 C -0.077 4.077 12 C -0.120 4.120 13 C 0.141 3.859 14 N -0.620 5.620 15 C -0.243 4.243 16 H 0.051 0.949 17 C -0.035 4.035 18 N -0.959 5.959 19 Si 0.945 3.055 20 H -0.276 1.276 21 H -0.313 1.313 22 H -0.261 1.261 23 C 0.122 3.878 24 C -0.121 4.121 25 C 0.100 3.900 26 N -0.294 5.294 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.043 0.957 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.260 0.740 42 H 0.029 0.971 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.226 0.774 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 -9.711 30.318 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.225 6.225 3 C 0.138 3.862 4 C -0.338 4.338 5 C 0.383 3.617 6 O -0.463 6.463 7 N -0.359 5.359 8 C 0.056 3.944 9 H 0.091 0.909 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.159 4.159 13 C 0.016 3.984 14 N -0.345 5.345 15 C -0.373 4.373 16 H 0.068 0.932 17 C -0.230 4.230 18 N -0.605 5.605 19 Si 0.775 3.225 20 H -0.203 1.203 21 H -0.242 1.242 22 H -0.185 1.185 23 C -0.003 4.003 24 C -0.160 4.160 25 C -0.086 4.086 26 N -0.117 5.117 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.062 0.938 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.242 0.758 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.871 -10.095 31.188 33.494 hybrid contribution 0.448 -0.324 -1.523 1.620 sum -6.423 -10.419 29.665 32.091 Atomic orbital electron populations 1.23306 0.74972 1.05813 1.01514 1.85956 1.23009 1.20450 1.93048 1.19481 0.94788 0.84901 0.87013 1.20115 1.20610 1.00341 0.92731 1.17197 0.77235 0.83066 0.84213 1.90767 1.45872 1.24915 1.84727 1.45762 1.61759 1.23167 1.05180 1.20782 0.94945 0.99099 0.79533 0.90915 1.22182 0.95991 1.02093 1.01331 1.21205 0.98596 0.95782 0.93997 1.22011 0.99652 0.94097 1.00122 1.21145 0.96721 0.97383 0.83110 1.44485 1.86153 1.00974 1.02876 1.18850 1.28096 1.01085 0.89268 0.93153 1.25972 1.00783 1.00772 0.95464 1.69957 1.44950 1.47250 0.98378 0.85901 0.80580 0.79339 0.76723 1.20297 1.24228 1.18533 1.21346 0.96856 0.83982 0.98144 1.21969 0.99511 0.99782 0.94767 1.24411 0.95766 0.96637 0.91833 1.77219 1.20144 1.00522 1.13808 1.49267 1.44901 1.13767 1.07629 1.22372 1.05122 1.02938 0.75250 0.93786 0.85640 0.91270 0.75190 0.91515 0.91568 0.93472 0.90396 0.92091 0.89102 0.94790 0.92637 0.93096 0.95279 0.93708 0.90741 0.91841 0.75763 0.88370 0.87701 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 11.13 113.37 1.26 1.79 16 2 O -0.32 -6.56 9.76 -79.46 -0.78 -7.33 16 3 C 0.31 6.57 6.98 84.44 0.59 7.16 16 4 C -0.32 -7.03 6.15 -20.03 -0.12 -7.15 16 5 C 0.59 15.18 7.76 86.52 0.67 15.85 16 6 O -0.58 -19.07 16.04 2.71 0.04 -19.02 16 7 N -0.71 -14.85 4.99 -446.26 -2.23 -17.08 16 8 C 0.16 3.90 2.40 44.99 0.11 4.00 16 9 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 10 C -0.16 -3.87 8.78 71.98 0.63 -3.24 16 11 C -0.08 -1.99 2.14 -10.76 -0.02 -2.02 16 12 C -0.12 -3.14 4.81 30.67 0.15 -2.99 16 13 C 0.14 4.95 6.52 86.36 0.56 5.51 16 14 N -0.62 -28.14 2.72 -699.11 -1.90 -30.04 16 15 C -0.24 -13.63 10.01 84.03 0.84 -12.79 16 16 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 17 C -0.04 -2.07 5.23 84.86 0.44 -1.62 16 18 N -0.96 -60.55 13.97 21.65 0.30 -60.25 16 19 Si 0.95 46.88 24.38 68.60 1.67 48.56 16 20 H -0.28 -13.03 6.66 99.48 0.66 -12.37 16 21 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 22 H -0.26 -12.34 6.70 99.48 0.67 -11.67 16 23 C 0.12 5.01 4.21 86.36 0.36 5.37 16 24 C -0.12 -3.85 4.96 30.67 0.15 -3.70 16 25 C 0.10 1.67 11.50 85.71 0.99 2.66 16 26 N -0.29 -5.44 12.48 -56.22 -0.70 -6.14 16 27 N -0.37 -6.16 3.99 -479.78 -1.91 -8.08 16 28 C 0.08 0.61 11.41 127.77 1.46 2.07 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.41 6.32 5.79 -92.71 -0.54 5.79 16 33 H 0.07 1.56 6.46 -2.39 -0.02 1.55 16 34 H 0.07 1.68 6.46 -2.39 -0.02 1.66 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.75 6.51 -2.39 -0.02 1.73 16 38 H 0.09 1.65 6.46 -2.39 -0.02 1.63 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 2.00 7.93 -2.39 -0.02 1.99 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.03 1.17 7.05 -2.38 -0.02 1.15 16 43 H 0.04 2.08 4.84 -2.39 -0.01 2.07 16 44 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.06 2.13 6.51 -2.39 -0.02 2.12 16 46 H 0.23 1.98 7.50 -2.91 -0.02 1.95 16 47 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.10 0.54 8.04 -2.39 -0.02 0.52 16 49 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.80 383.55 2.91 -75.88 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.35 Total: 12.60 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 8.07 Total: 10.90 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -6.44 Total: -121.58 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.73 Total: -26.35 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.67 Total: 48.56 kcal Total: -78.80 2.91 -75.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.530 kcal (2) G-P(sol) polarization free energy of solvation -78.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds