Wall clock time and date at job start Tue Mar 31 2020 19:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99964 * 2 1 4 4 C 1.52999 * 109.46949 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47071 * 175.64721 * 4 3 2 6 6 N 1.28439 * 125.18926 * 264.53221 * 5 4 3 7 7 C 1.30866 * 110.92854 * 179.97438 * 6 5 4 8 8 C 1.39675 * 107.85628 * 359.73873 * 7 6 5 9 9 C 1.36599 * 125.18816 * 84.50772 * 5 4 3 10 10 C 1.47156 * 126.88641 * 0.02562 * 9 5 4 11 11 O 1.21625 * 120.00496 * 27.13006 * 10 9 5 12 12 N 1.34785 * 119.99948 * 207.40272 * 10 9 5 13 13 C 1.46926 * 120.62655 * 7.97239 * 12 10 9 14 14 C 1.53196 * 108.77496 * 126.36994 * 13 12 10 15 15 C 1.53037 * 109.31340 * 54.62902 * 14 13 12 16 16 H 1.08994 * 109.46458 * 58.65919 * 15 14 13 17 17 N 1.46498 * 109.45829 * 178.62908 * 15 14 13 18 18 C 1.36940 * 120.00144 * 275.00032 * 17 15 14 19 19 H 1.07993 * 119.99612 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99773 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00413 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99688 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47274 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47480 * 119.99840 * 22 20 18 25 25 H 1.48503 * 109.47030 * 239.99961 * 22 20 18 26 26 C 1.53034 * 109.53931 * 298.63372 * 15 14 13 27 27 H 1.09001 * 109.50245 * 301.41625 * 26 15 14 28 28 C 1.52995 * 109.50113 * 181.35229 * 26 15 14 29 29 C 1.46924 * 120.62851 * 187.68713 * 12 10 9 30 30 H 1.08997 * 109.46675 * 299.99913 * 1 2 3 31 31 H 1.09000 * 109.47194 * 59.99944 * 1 2 3 32 32 H 1.08995 * 109.46822 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47034 * 60.00706 * 3 2 1 34 34 H 1.08993 * 109.47057 * 300.00210 * 3 2 1 35 35 H 1.08996 * 109.47216 * 55.64647 * 4 3 2 36 36 H 1.09003 * 109.47467 * 295.64779 * 4 3 2 37 37 H 1.08000 * 126.06968 * 180.02562 * 7 6 5 38 38 H 1.07998 * 127.31326 * 180.27299 * 8 7 6 39 39 H 1.09004 * 109.58412 * 246.15013 * 13 12 10 40 40 H 1.08996 * 109.59015 * 6.57765 * 13 12 10 41 41 H 1.08997 * 109.49349 * 174.58572 * 14 13 12 42 42 H 1.08996 * 109.49252 * 294.67665 * 14 13 12 43 43 H 0.97004 * 119.99898 * 94.99978 * 17 15 14 44 44 H 0.96998 * 120.00271 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47304 * 59.99636 * 28 26 15 46 46 H 1.08997 * 109.47879 * 180.02562 * 28 26 15 47 47 H 1.09010 * 109.47221 * 300.00272 * 28 26 15 48 48 H 1.08998 * 109.58890 * 353.42023 * 29 12 10 49 49 H 1.08998 * 109.58352 * 113.84927 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1310 2.5191 -0.1055 6 7 4.5166 3.0738 -1.1979 7 6 5.0056 4.2660 -0.9695 8 6 4.9229 4.5069 0.4039 9 6 4.3605 3.3633 0.9436 10 6 4.0633 3.1101 2.3624 11 8 4.0388 1.9698 2.7846 12 7 3.8130 4.1417 3.1930 13 6 3.6607 5.5055 2.6680 14 6 2.3292 6.0787 3.1633 15 6 2.2734 5.9829 4.6897 16 1 3.1115 6.5317 5.1189 17 7 1.0152 6.5601 5.1692 18 6 0.9179 7.9094 5.3814 19 1 1.7685 8.5481 5.1948 20 6 -0.2745 8.4564 5.8353 21 7 -1.3116 7.6782 6.0613 22 14 -0.4075 10.2971 6.1241 23 1 0.8886 10.9444 5.7975 24 1 -1.4741 10.8586 5.2567 25 1 -0.7424 10.5519 7.5482 26 6 2.3547 4.5147 5.1136 27 1 1.5306 3.9601 4.6646 28 6 2.2649 4.4174 6.6378 29 6 3.6810 3.9228 4.6398 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8515 0.5780 -0.8493 36 1 3.8630 0.7124 0.9255 37 1 5.3987 4.9449 -1.7117 38 1 5.2341 5.3958 0.9324 39 1 4.4816 6.1279 3.0243 40 1 3.6649 5.4802 1.5783 41 1 2.2478 7.1228 2.8611 42 1 1.5055 5.5095 2.7327 43 1 0.2511 5.9864 5.3365 44 1 -2.1447 8.0604 6.3788 45 1 1.3182 4.8405 6.9738 46 1 2.3233 3.3716 6.9394 47 1 3.0898 4.9711 7.0865 48 1 3.6985 2.8535 4.8507 49 1 4.5035 4.4135 5.1601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036070607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:05 Heat of formation + Delta-G solvation = 21.381357 kcal Electronic energy + Delta-G solvation = -30283.835323 eV Core-core repulsion = 26248.715937 eV Total energy + Delta-G solvation = -4035.119385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.80146 -39.97306 -38.27651 -37.69906 -34.94426 -34.01139 -33.07354 -31.59870 -30.95863 -29.59433 -29.34889 -26.64293 -26.49321 -25.30799 -23.87983 -23.29745 -22.07662 -21.94256 -21.47300 -19.86907 -19.24771 -17.40057 -17.17718 -17.01868 -16.43506 -16.37004 -16.13286 -15.58297 -15.19672 -14.98406 -14.67590 -14.35341 -14.16882 -14.07309 -13.79947 -13.55285 -13.34737 -13.22137 -12.95676 -12.49781 -12.41167 -12.24972 -11.85138 -11.80334 -11.64861 -11.59240 -11.25042 -10.99086 -10.93363 -10.83900 -10.69133 -10.45830 -10.20339 -10.12532 -10.00484 -9.79427 -9.67545 -9.41433 -9.16800 -8.92908 -8.59358 -7.01082 -5.82164 -3.11000 1.12601 1.96356 2.43144 2.88242 3.03285 3.38889 3.44748 3.47000 3.61956 4.24242 4.29767 4.53563 4.56908 4.72684 4.92622 4.98417 5.01289 5.07407 5.10566 5.18057 5.19426 5.25790 5.32210 5.38037 5.41369 5.45645 5.49117 5.55208 5.59231 5.63261 5.71538 5.88608 6.01398 6.08497 6.25391 6.25805 6.31655 6.38257 6.44875 6.47625 6.55907 6.72607 6.75525 6.86278 6.99321 7.30865 7.64883 7.82998 8.00534 8.35911 9.47617 10.04655 10.39355 11.40360 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.003022 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.981384 B = 9262.818720 C = 9704.935444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.052 3.948 4 C 0.118 3.882 5 N -0.258 5.258 6 N -0.279 5.279 7 C 0.000 4.000 8 C -0.191 4.191 9 C -0.027 4.027 10 C 0.587 3.413 11 O -0.544 6.544 12 N -0.587 5.587 13 C 0.087 3.913 14 C -0.151 4.151 15 C 0.183 3.817 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.110 4.110 27 H 0.069 0.931 28 C -0.136 4.136 29 C 0.122 3.878 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.188 0.812 38 H 0.169 0.831 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 -10.867 -11.872 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.026 4.026 4 C -0.002 4.002 5 N -0.047 5.047 6 N -0.110 5.110 7 C -0.176 4.176 8 C -0.220 4.220 9 C -0.155 4.155 10 C 0.373 3.627 11 O -0.422 6.422 12 N -0.319 5.319 13 C -0.035 4.035 14 C -0.192 4.192 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.130 4.130 27 H 0.087 0.913 28 C -0.194 4.194 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.205 0.795 38 H 0.186 0.814 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.733 -12.361 -12.433 20.557 hybrid contribution -0.552 1.890 0.730 2.100 sum 10.181 -10.471 -11.703 18.715 Atomic orbital electron populations 1.22806 0.79831 1.03162 1.00556 1.87777 1.20630 1.26353 1.95574 1.22665 0.92467 0.85867 1.01562 1.21836 0.92408 0.78772 1.07228 1.45472 1.42654 1.13979 1.02576 1.73219 1.16070 1.10887 1.10864 1.23635 1.03973 0.93921 0.96106 1.22484 1.06218 0.98388 0.94887 1.21479 1.09853 0.93298 0.90851 1.16958 0.77322 0.84906 0.83481 1.90780 1.53155 1.21125 1.77148 1.47857 1.68490 1.07896 1.07650 1.22468 0.99496 0.81247 1.00300 1.22689 0.94727 1.01338 1.00451 1.20207 0.91058 0.90682 0.90769 0.93286 1.42415 1.09495 1.05627 1.78544 1.19259 0.96795 0.83956 1.36935 0.91139 1.24725 0.96129 0.97681 1.02268 1.69664 1.02461 1.33775 1.52100 0.86162 0.77374 0.85433 0.77472 1.20553 1.21937 1.21910 1.21664 0.96353 0.97984 0.96998 0.91296 1.21657 1.03582 1.00141 0.93978 1.21712 0.98024 1.02410 0.77888 0.93468 0.93810 0.89070 0.92328 0.92416 0.87146 0.85759 0.79467 0.81389 0.91044 0.88645 0.90351 0.92371 0.78241 0.93560 0.90672 0.93769 0.92968 0.89132 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.45 10.70 -35.23 -0.38 -4.83 16 3 C 0.05 0.60 6.26 37.16 0.23 0.83 16 4 C 0.12 1.35 6.33 -4.04 -0.03 1.33 16 5 N -0.26 -3.26 3.35 -57.14 -0.19 -3.45 16 6 N -0.28 -3.43 11.90 30.59 0.36 -3.06 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -2.02 8.60 -38.98 -0.34 -2.36 16 9 C -0.03 -0.34 6.41 -82.06 -0.53 -0.87 16 10 C 0.59 8.45 7.53 -12.64 -0.10 8.35 16 11 O -0.54 -9.00 14.56 5.26 0.08 -8.92 16 12 N -0.59 -7.93 2.98 -174.39 -0.52 -8.45 16 13 C 0.09 1.08 5.19 -3.71 -0.02 1.06 16 14 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 15 C 0.18 3.30 2.20 -67.90 -0.15 3.15 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -16.75 4.41 -53.39 -0.24 -16.99 16 18 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 22 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 C -0.11 -1.73 2.44 -90.72 -0.22 -1.95 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 C -0.14 -2.11 9.03 37.16 0.34 -1.78 16 29 C 0.12 1.67 5.70 -3.93 -0.02 1.64 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.12 1.55 6.44 -51.93 -0.33 1.21 16 37 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.17 1.41 6.43 -52.49 -0.34 1.07 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.06 4.23 -51.93 -0.22 0.84 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.38 9.70 7.50 -40.82 -0.31 9.39 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 48 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -31.44 392.73 -7.41 -38.85 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.83 Total: 9.53 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.32 Total: 1.26 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.14 Total: -58.41 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.30 Total: -13.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.44 -7.41 -38.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036070607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.232 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds